Clupea harengus (Atlantic herring): 105893414
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Entry
105893414 CDS
T09045
Symbol
btaf1
Name
(RefSeq) TATA-binding protein-associated factor 172
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
char03021
]
105893414 (btaf1)
Transcription machinery [BR:
char03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
105893414 (btaf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
Helicase_C
HEAT
HEAT_EF3_N
HEAT_2
Vac14_Fab1_bd
TOR1L1_N
HEAT_EZ
TPR_Trm732_C
ARM_ECM29
MMS19_N
Arm
Caskin-Pro-rich
Motif
Other DBs
NCBI-GeneID:
105893414
NCBI-ProteinID:
XP_031435303
Ensembl:
ENSCHAG00000011990
UniProt:
A0A6P8G778
LinkDB
All DBs
Position
13:complement(21475785..21507689)
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AA seq
1858 aa
AA seq
DB search
MAVSRLERLFILLDTGTTPVTRKAAAQQLGDVVRLHPHELNNLLAKVLTYLRSPNWDTRI
AAGQAVEAIVKNIPEWNPPPRPKQESGQELTREDSPSDRLSFYRFDISRLLRHGASLLGS
AGAEFDVQEDESGEVDPKERLARQRKRLQKKLGLDMGAAIGMDTEELFNDEDLDCSCPPT
AVYNRPPGVKGSAWPASRNHVPMQAAELIDSEFRPGMSNRQRNKAKRMAKLVAKQRSRDM
DPNEKSNDSCEGEPEEKRRKTTNVVIEQPATDSKVLIDNVPDNSSMFEETQEWPLESFCE
ELCNDLFNPSWEVRHGAGTGLREVLKCHSAGGGKLVGCTAEQMSRQHQEWLEDVVIRLLC
VFALDRFGDFVSDEVVAPVRETCAQTLGVSLRHMTDKGVAMTVDILLKLLTEDQWEVRHG
GLLGIKYALAVRQDLIADLLPRVLPAITEGLQDLDDDVRAVAAAALIPVVDGLVQLQLPK
VPFIVNILWDALLELDDLTASTNSIMTLLSSLLTYPEVRECNMQESLTVLVPRVWPFLRH
TISSVRKAALETLFTLLSKAEQNCAVWLNPILQDMLRHIFQSCILESNPEILDLIQKVWE
ELLRQALPQYVVAASCPWMGAWLCLMMQVSHIPIDLNMLLEVKARSKEKSGKPHQVGGQV
KETVQEYIAGAETVTEDPATRDYMVMRARLMSAKLLGVLCRSICDPRINSGPQEIRPAES
LAQLLLFHLNSKSALQRIAVTMVLCEWAAEQKESELVSSMVQPRLLAILSEHLYYDEIAI
PFTRVQTECKQLIALLADAQLHVHERFNCSVLTIDQANELVTTVFSEMTAEVNTCSQTWA
ALEGKHQQAAAAAAEAGSEWQRLQLRVHTFCACAAVGLGPLPERLNPLVRPLMEAARREE
NTLVQGHAAAAIARLLQRCAGRTPCPNSKVLRNLCSSLCVDPLLTPSVSCPTPTPAAPAG
GNASQEGGRDGAHHMVSKTKGIITLYLHQKAAFAVTSKRGPAPKPPKNLSSEVAPNSTAT
MDTDESKKPSLIQRRGAEFSLTTITKHFGAQLTVALPFLWETMIGPLKAVVEGREGLDVP
LLLEKGDTVAQELVGSLQVLEVVAGAIAPQLIPLLLEQLPHLCLCLQHPYTAVRHMAARC
VGVLSKIATLETMEIFLERVLPWLGAIDNSTKQEGAIEALACVMEQLDVDIVPYIVLLVV
PVLGRMSDPSDSVRFMATQCFATLIRLLPLEAGIPDPPSMSDDLIRQKARERHFLEQLLD
SRKLENYKIPVPIKAELRKYQQDGVNWLSFLNKYKLHGILCDDMGLGKTLQSICILAGDH
FLRVQEYAKTKAADSTPLPSLVVCPPTLTGHWVDEVGKFCTKEFLNPLHYTGPPTERARL
QHQVKKHNLVVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAIKQIAANFRV
ILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDAKSSSREQEAGVLAM
EALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCNLSPLQVQLYEDFAKSRAKVSVDDTIS
TTEPEEEEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEYKRVIEQLAAQSSSLRDM
QHAPKLSALKQLLLDCGLGAAGGADGGTEAVVAQHRVLIFCQLKSMLDIVEQDLLKPQLP
SVTYMRLDGSVPAGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNP
MRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMSIANTVISQENASLQSMG
TDQLLNLFTLDRADRSEPSSSNPEKASMKSVLDGLGDLWDQQQYETEYDLDSFMHSLQ
NT seq
5577 nt
NT seq
+upstream
nt +downstream
nt
atggccgtatcaaggcttgaacgtctgttcattctgctagacactggtacaactccagtg
accaggaaagccgcagcccagcaactgggcgacgtggttagacttcatccccatgagctg
aacaatctattagccaaggttttgacttatctcaggagtccaaattgggacaccagaatt
gcagctggtcaggctgtggaggcaatagtcaaaaatattccagaatggaaccctccgccc
aggcctaaacaggagagcggtcaggagctgaccagggaggactctccgtcagatcgcctg
agcttctacaggttcgacatctcccgcctcctccgccatggggcctccctcctgggctcc
gccggagcagagttcgacgtccaggaagacgagtcgggtgaggtggacccgaaagaacgc
ctggcccggcagaggaagcgtctccagaagaagctggggctggacatgggcgccgccatc
ggcatggacaccgaggagctgttcaacgacgaggacctggactgcagctgcccccccacc
gccgtctacaacagaccccccggtgtcaaggggtccgcctggccagcctcacgcaaccac
gtgcctatgcaggcagctgagctgatcgattcagagttccgaccaggcatgagcaatcga
caaagaaacaaggccaaaaggatggcgaagctggtggccaagcagagatcaagagacatg
gaccccaatgagaaaagcaatgacagctgtgaaggggagccagaggagaaacgtcggaaa
acgactaacgttgtcatcgagcaaccggcaacagatagtaaagtattaatcgacaacgtc
ccagataattccagtatgtttgaagagacacaagagtggcccttagaaagcttctgtgag
gagctatgcaatgacctcttcaacccctcctgggaggtccgccacggagccggcacgggc
ctcagggaagtgctcaaatgtcacagcgccggcgggggcaagctggtcggctgcacggca
gaacagatgtcacggcagcaccaggagtggctggaggatgtggtcatccgtctgctctgc
gtcttcgccctggaccgctttggagacttcgtgtcagatgaggtggttgcccctgtaagg
gagacgtgtgcccaaacattaggtgtgtctctgcgacacatgacggacaagggcgtcgcc
atgacggtggatatcctccttaagctgctgaccgaagaccagtgggaggtcagacatggg
ggcctgttgggaatcaaatatgccctcgccgtgcgacaggacctgatcgcagacctgctg
cccagagtgctccctgccatcaccgagggtctgcaggacctggacgatgacgtgcgtgcg
gtggcagccgccgccctcatccccgtggtggacgggctggtgcagctgcagctccccaag
gtccctttcatcgtgaacatcctctgggatgctctccttgagctggatgacctcaccgcc
tccaccaacagcatcatgaccctgctgtcctcacttctcacctacccagaagtccgcgag
tgcaacatgcaggagtccctgacagtcctggtccctcgcgtctggcccttcctgcgccac
accatctcatctgtgcgcaaggcagcgctggagaccctcttcacactactgtcgaaagct
gagcagaactgtgcagtgtggctgaaccccatcctgcaggacatgctgagacacatcttt
cagtcctgcatcctggagagcaacccagagatactggatctcattcagaaggtgtgggag
gagcttctgaggcaagccttgccccaatacgtggtggcggccagctgtccttggatgggg
gcgtggctttgcctgatgatgcaggtgtcccacatccccatcgacctcaacatgctgctg
gaggtcaaagcccgctcaaaggagaagtctggtaagcctcaccaggtaggcggtcaggtg
aaggagacggtgcaggagtacatcgccggggcggagacggtgaccgaagaccccgccacc
cgcgactacatggtgatgagggcgcgtctaatgtctgccaagctgttgggggtgctgtgc
cgcagcatctgtgacccgcgcatcaacagcggaccccaggagatccggccagccgagtct
ctggcccagctgctgctcttccacctcaactccaagtctgctctgcagcgcatcgccgtc
accatggtgctgtgtgagtgggccgctgagcagaaggagagtgagctggtgtctagtatg
gtacagccgcggctgctggccatcctgtcggagcatctgtactacgacgagatcgccatc
cccttcacgcgggtgcagaccgagtgcaagcagctcatcgcactgctggccgacgcccag
ctgcacgtgcacgagcgcttcaactgcagcgtgctcaccatcgaccaggccaacgagctg
gtgaccacggtcttctcggagatgacggcggaggtgaacacgtgctcccagacgtgggcg
gcgctggaggggaagcaccagcaggcggcggcggccgcggcggaggcgggcagcgagtgg
cagcggctgcagctgcgcgtgcacaccttctgcgcctgcgccgccgtgggcctgggcccg
ctgcccgagcgcctcaacccgctggtgcgcccgctcatggaggcggcacggcgcgaggag
aacacgctggtccagggtcacgctgcggcggccatcgcccgactgctgcagaggtgcgct
ggccgcacgccctgccccaactccaaggtgctgcgcaacctgtgctcctcgctctgcgtg
gaccccctgctcacccccagcgtctcctgccccaccccgacgcccgccgcgcccgccggg
ggcaatgccagccaggagggaggcagagatggtgctcaccatatggtgagcaagaccaag
ggcatcatcacgctctacctgcaccagaaggctgctttcgccgtcaccagcaagaggggc
cccgcgcccaaaccccccaagaacctctccagcgaggtggccccaaacagcaccgcaacc
atggacaccgatgagagcaagaaaccgagtctcatccagcgaagaggcgcagagttctcc
ctgacgaccatcaccaagcacttcggggctcagttgaccgtggcgctgcccttcctgtgg
gagaccatgattggccccctgaaagccgtggtggagggcagagagggtctggatgtcccg
ttgttgctggagaaaggagacacggtggcccaggagctggtgggctctctgcaggtcctg
gaggtggtggctggggccatcgctccccaactcatccccttgctcctggagcagctgccc
cacctgtgcctgtgtctgcagcacccctacacggccgtgcggcacatggctgcgcgctgc
gtcggggtgctcagcaagatcgccacactggagaccatggagatcttcctggagcgcgtg
ctgccctggctgggcgccatcgacaacagcaccaagcaggagggagccatcgaggcgctg
gcctgtgtgatggagcagctggacgtggacatcgtcccctacatcgtgctgctggtggtc
cccgtgctgggccgcatgagtgaccccagcgacagcgtgcgcttcatggccacgcagtgc
ttcgccacgctcatcagactactgccactggaggctggtatcccagaccccccatccatg
tctgatgacctgatccgccagaaggcccgggagaggcacttcctggaacagctactggac
agcaggaagctggagaactacaagatcccagtgcccatcaaggctgagctgaggaagtat
cagcaggatggagtgaactggctctccttcctcaacaagtacaagctgcatggcatactg
tgtgatgacatgggtcttgggaagacccttcagtccatctgcatcctggcgggagaccac
ttcctcagggtgcaggagtatgccaagacaaaggctgcagacagtactcccctgccctcg
ctggtagtgtgcccccctacgctgactggccactgggtggacgaggtgggcaagttctgc
actaaagagttcctgaaccccctgcactacactggacctccaacagagagagcaaggtta
cagcatcaggtgaagaaacacaacctcgtggtagcgtcttatgatgtcgtaaggaatgac
atcgacttttttaggaatattaaatttaattattgtatcctggatgagggccatgtcatt
aagaatgggaagaccaagctttccaaggccatcaagcagatagcggccaacttccgtgtc
atcctgtcgggaacgccaatccagaacaacgttctggagctttggtcgctcttcgacttc
ctcatgcccggtttcctgggcaccgagcgtcagtttgccgcccgctacggaaaaccaatc
ctggccagccgcgatgccaagagctcgtctcgggagcaggaggcaggggtgctggccatg
gaggctctgcatcgacaagtgctgcccttcctcctgaggaggatgaaggaggacgtgctg
caagacctgcctcccaagatcatccaggactactactgcaacctcagccccctacaggtc
cagttgtatgaagactttgccaaatccagagccaaggtgagcgtggacgacaccatctcc
actacagagccagaggaagaggagaagccgaagctcaaggccactggacacgtcttccag
gcgctgcagtacctgcggaagctgtgtaaccacccggccctagtcctgacgccgcagcac
cccgagtacaagcgcgtcatcgagcagctcgccgcccagagctccagcctcagggacatg
cagcacgcgcccaaactctccgccctcaaacagctgttactggactgcggtctgggcgca
gcgggtggagcggatggcggcacggaggcggtggtggcgcagcaccgcgtgctcatcttc
tgccagctcaagagcatgctggacatcgtggagcaggacctgctcaagccgcagctgccc
tccgtcacctacatgcggctggatggcagcgtgcccgcgggccagcgccactccatagtg
tccaggttcaacaacgatccgtccatcgacgtgctgctgctcaccacccatgtcggtggc
ctgggcctgaacttgaccggcgcagacacggtggtgttcgtggagcacgactggaacccc
atgagggacctgcaggccatggaccgtgcccacaggataggacagaaacgcgtggtgaac
gtgtaccgcctgatcacgagaggtaccttagaggagaagatcatgggcctgcagaagttc
aagatgagcatcgccaacacggtcatcagccaggagaacgccagcctccagagcatgggc
accgaccagctcctcaacctcttcacactagaccgggcagaccggagcgagccgtcctcc
tccaacccggagaaggcctccatgaagtccgtgctggacggcctgggagacctgtgggac
cagcagcagtacgagacggagtacgacctggacagcttcatgcactctcttcagtaa
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