Clupea harengus (Atlantic herring): 105893444
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Entry
105893444 CDS
T09045
Symbol
fancl
Name
(RefSeq) E3 ubiquitin-protein ligase FANCL
KO
K10606
E3 ubiquitin-protein ligase FANCL [EC:
2.3.2.27
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03460
Fanconi anemia pathway
char04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
105893444 (fancl)
09124 Replication and repair
03460 Fanconi anemia pathway
105893444 (fancl)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
105893444 (fancl)
03400 DNA repair and recombination proteins [BR:
char03400
]
105893444 (fancl)
Enzymes [BR:
char01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105893444 (fancl)
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
105893444 (fancl)
DNA repair and recombination proteins [BR:
char03400
]
Eukaryotic type
DSBR (double strand breaks repair)
FA (Fanconi anemia) pathway
FA core complex
105893444 (fancl)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FANCL_d3
FANCL_C
FANCL_d1
FANCL_d2
zf-RING_2
SLX1_C
zf-HC5HC2H
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
105893444
NCBI-ProteinID:
XP_012675315
Ensembl:
ENSCHAG00000009225
UniProt:
A0A6P3VLB0
LinkDB
All DBs
Position
13:23629263..23644788
Genome browser
AA seq
372 aa
AA seq
DB search
MMDSQIMTENPLLLPLNKDKTVYDGFITVQERDFRIRISLPPGHQLKQAKLHCCWQLKRL
LSGYQPILKQRLHHAPDLVSFILELKTVLELAMRSRPDCQTIPPPQYYSQLITEMQSLGW
DKLLFIDSEFRTLKLQGEDSAGRKHILTVKLKPNYPDEAPECVADLPFPFLMSWTPQSTL
AHIHGRFLLHLEGLAEFWSALDEIDEQTWVLEPEKPSRADAMRRIAIGNNVSIKVEIDPR
HPKMLPDCCLLGAEHVVTPLRTKLNANMHLWNPDCSILQNMRDVLEIEFPSPSTHEKSSL
SAECGICYAYRLESAIPDQVCNDPRCGQPFHQVCLYEWLRGLPTSRQSFNVLFGECPYCS
KPITVKMAVQKA
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atgatggacagccaaataatgacagagaacccgttattactgcctctcaacaaggacaaa
actgtctatgatggcttcatcaccgtgcaggagagggatttcaggataagaatatctctt
ccaccaggtcatcagctcaaacaggcaaaactgcactgctgctggcaactgaaaaggctt
ctgagtggatatcagccaattctaaaacagaggttgcatcacgccccggacttggtcagt
ttcattttggagctaaaaactgtgctggaattggcaatgaggagcagaccagactgtcag
accataccacctccacagtactattcccagctgatcacagagatgcagagcctgggatgg
gataagctgttgttcattgactcagagttccgcacactgaagctgcaaggagaggactct
gctggccgtaaacacatccttacagtcaagctcaagcccaattatccggatgaagcccca
gagtgcgtagccgatctcccttttcccttcctcatgagttggacaccacagagcaccttg
gcccacattcacggccgcttcctgctccacttggaaggcctggccgagttctggtcggcg
ctggacgagatcgacgaacagacgtgggtcctcgagccagagaagccctcccgagcggac
gccatgagacggatcgctattgggaacaatgtctccataaaggtggagatcgaccccaga
cacccgaagatgctgcctgattgctgtctactaggagcagaacacgtggttacccccttg
aggaccaagcttaatgccaacatgcatttatggaatccagactgcagcattctacagaac
atgagggatgttctagagatagaattcccttcgccctccacccacgaaaaatctagcctc
agcgcagagtgtggcatctgttacgcgtaccggctggagtcggccatcccggaccaggtg
tgcaacgaccctcgctgtggccagccgtttcaccaggtctgcctgtatgagtggctcaga
ggtctgcccacgagtcgccagagcttcaacgttttgtttggagagtgtccatactgtagc
aagcccattacagtgaagatggcagtgcaaaaggcttga
DBGET
integrated database retrieval system
