Clupea harengus (Atlantic herring): 105893487
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Entry
105893487 CDS
T09045
Symbol
xpo1b
Name
(RefSeq) LOW QUALITY PROTEIN: exportin-1
KO
K14290
exportin-1
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03008
Ribosome biogenesis in eukaryotes
char03013
Nucleocytoplasmic transport
char03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105893487 (xpo1b)
03008 Ribosome biogenesis in eukaryotes
105893487 (xpo1b)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
105893487 (xpo1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105893487 (xpo1b)
03009 Ribosome biogenesis [BR:
char03009
]
105893487 (xpo1b)
03016 Transfer RNA biogenesis [BR:
char03016
]
105893487 (xpo1b)
03036 Chromosome and associated proteins [BR:
char03036
]
105893487 (xpo1b)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
105893487 (xpo1b)
Ribosome biogenesis [BR:
char03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
105893487 (xpo1b)
Pre-60S particles
105893487 (xpo1b)
Transfer RNA biogenesis [BR:
char03016
]
Eukaryotic type
tRNA transport factors
tRNA export factors
105893487 (xpo1b)
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
105893487 (xpo1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CRM1_C
Xpo1
CRM1_repeat_2
CRM1_repeat_3
CRM1_repeat
IBN_N
TPR_TNPO3_IPO13_2nd
BspA_v
Hydrolase_3
Motif
Other DBs
NCBI-GeneID:
105893487
NCBI-ProteinID:
XP_031434561
Ensembl:
ENSCHAG00000002294
UniProt:
A0A6P8GCJ2
LinkDB
All DBs
Position
13
Genome browser
AA seq
1071 aa
AA seq
DB search
MPAIMTMLADHAARQLLDFNQKLDINLLDNVVNCLYHGVGPQQRMAQEVLTHLKEHPDAW
TRVDTILEFSQNMNTKYYALQILETVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDATSV
EKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFD
FSSGQMTQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGY
IFETKLISTLVYKFLNVPMFRNVTLKCLTEIAGVSVSQYEEQFVTLFTLTMMQLKQMLPL
NTNIRLAYANGKDDEQNFIQNLSLFLCTFLKEHGQLIEKRLNLRETLMEALHYMLLVSEV
EETEIFKICLEYWNHLAAELYRESPFSTSTSPLLSGSQHFDVPPRRQLYLPVLSKVRMLM
VSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYADTERIMTEKL
HNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAII
ASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFV
QVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQAVQEHLIEKYMLL
PNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNV
YKCLSENISAAIQTNGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVGENFVPPL
LDAVLIDYQRNVPAAREPEVLSTMATIVNKLGGHITTEIPQIFDAVFECTLNMINKDFEE
YPEHRTHFFYLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILYTL
LQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEGKINT
ALNPSSPVNNQGFIQEYVANLLKTAFPHLQDAQVKVFVTGLFSLNQDIPAFKEHLRDFLV
QIKEFAGEDTTDLFLEEREASLRQAQEEKHKLQMSVPGILNPHEIPEEMCD
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atgccagcaattatgacaatgttagccgaccatgcagcgcgacagctgctggacttcaac
cagaaactggatattaacctgctggataatgttgtgaattgtctctaccacggtgtggga
ccccagcaaagaatggcacaggaggtgttgacccatttgaaagaacatccggatgcctgg
accagagtagacaccatcttggagttctcgcagaacatgaacaccaaatactatgccctg
cagattctggaaacggttataaaaacaagatggaagattttaccacgaaaccagtgtgaa
ggaatcaaaaagtatgttgtcggtctgataatcaagacgtcatctgacgcaacaagtgtt
gagaaagagaaggtatacataggaaagctgaatatgatcctggtgcagatccttaagcag
gagtggcctaagcattggcccaccttcatcagtgacatagtgggcgccagccgcaccagc
gagagcctgtgccagaacaacatggtcatcctgaagctgctgagcgaggaggtgttcgac
ttctccagcggacagatgacccaggtcaaagccaagcaccttaaagacagcatgtgtaat
gaattctcccagattttccagctctgccagtttgtcatggaaaactcccagaatgcccca
ctggtccacgccacgttagaaacgttgcttcggtttctcaactggataccacttggctac
atatttgaaaccaagctcatcagcacgcttgtatataagttcctaaacgtgcccatgttc
cgcaacgtgacgctgaagtgcctgacggagatcgccggtgtgagcgtgagtcagtatgag
gagcagtttgtcacactgttcacactcacgatgatgcagctcaaacagatgcttcctctg
aacaccaacatccgcctggcttacgccaacggcaaggacgacgagcagaacttcatccag
aacctgagcctgttcctctgcaccttcctcaaggagcacggccagctcatcgagaagagg
ctcaacctgcgggagaccctcatggaggctctgcactacatgctgctggtgtctgaggtg
gaggagacggaaatcttcaagatctgcctggagtactggaaccacctggcggccgagctg
taccgcgagagccccttctctacctccacctcgccgctcctgtcaggcagccagcacttc
gacgtgccccccaggaggcagctctacctgcccgtcctctccaaggtgcgaatgctgatg
gtgagccgcatggccaagcctgaggaggtgctggtggtggagaacgaccagggcgaggtg
gtgcgggagttcatgaaggacacggactccatcaacctctacaagaacatgcgggagacg
cttgtctacctgactcacttggactacgcagacacggagcgcatcatgaccgagaagctg
cacaaccaggtgaacgggacggagtggtcctggaagaacctgaacacgctctgctgggcc
ataggctccatcagtggagccatgcacgaggaggacgagaagaggttcctggtcactgtg
atcaaggacctcctgggactatgtgagcagaagagggggaaagacaacaaagccatcatc
gcctccaacatcatgtacatcgtgggtcagtacccacggttcctgcgtgcccactggaag
tttctcaagactgttgtcaacaagctgttcgagttcatgcacgagacccacgatggcgtg
caagacatggcgtgcgacaccttcatcaagatcgcccagaagtgccggcgacactttgtc
caggtgcaggtgggcgaggtgatgcccttcatcgacgagatcctcaacaacatcaacacc
atcatctgtgacctccagccccagcaggtgcacacgttctacgaggcggtgggctacatg
atcggagcgcagacggaccaggccgtgcaggagcacctgatagagaagtacatgctgctc
cccaaccaggtgtgggacagcatcatccagcaggccaccaagaacgtggacatcctgaag
gacccagagaccgtgaagcagctgggcagcatcctgaagaccaacgtgcgggcctgcaag
gccgtgggccaccccttcgtcatccagctggggcgcatctacctggacatgctcaacgtc
tacaagtgcctgagcgagaacatctctgctgccatccagaccaatggtgagatggtgact
aagcagcctctgatcaggagcatgaggacagtgaagcgggagacgctaaagctaatttct
ggctgggtcagccgctccaacgacccacagatggtgggggagaactttgttcctccactt
ctggatgccgtgcttatcgattaccagcggaatgttccggctgccagggaacctgaggtg
ctcagcaccatggcaaccatcgtaaacaaacttggcgggcacatcaccacggaaatccca
cagatttttgatgccgtcttcgagtgcactctgaacatgatcaacaaggactttgaggaa
taccccgagcacaggacgcacttcttctacctgctccaggcagtgaattcccactgcttc
ccagcattcctggccatcccgccagcccagttcaagctggtgctggactccatcatctgg
gccttcaagcacaccatgaggaatgtggccgacacgggtctgcagatcctctacacgctc
ctgcagaacgtggcgcaggaagaggccgcggcgcagagcttctaccagacctacttctgt
gacatcctgcagcacatcttctccgttgtcacggatacgtcgcatactgccggtctgacg
atgcatgcctccatcctggcgtacatgttcaacctggtggaggagggcaagatcaacacc
gccctcaatccctccagcccagtcaacaaccagggcttcatccaggagtatgtggccaac
ctgctcaagacggccttcccccacctgcaggatgcccaagtcaaggtgtttgtaacaggc
ctcttcagcttaaaccaggacatcccagccttcaaggaacacctgagggacttcctggtg
cagattaaggagtttgcaggcgaggacaccacagacctgttcctggaggagcgggaggcg
tcgctcagacaggcccaggaggagaagcacaagcttcagatgtctgtgcccggcatcctc
aacccccacgagatccccgaggagatgtgtgactga
DBGET
integrated database retrieval system
