Clupea harengus (Atlantic herring): 105893839
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Entry
105893839 CDS
T09045
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105893839 (taf5l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
char03021
]
105893839 (taf5l)
03036 Chromosome and associated proteins [BR:
char03036
]
105893839 (taf5l)
Transcription machinery [BR:
char03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
105893839 (taf5l)
Coactivators
SAGA/TFTC/STAGA complex
105893839 (taf5l)
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
105893839 (taf5l)
STAGA complex
105893839 (taf5l)
TFTC complex
105893839 (taf5l)
SAGA complex
105893839 (taf5l)
SLIK complex
105893839 (taf5l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
TFIID_NTD2
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
ANAPC4_WD40
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_DCAF12
TRIP13_N
Cytochrom_D1
Dicty_REP
Motif
Other DBs
NCBI-GeneID:
105893839
NCBI-ProteinID:
XP_012675760
Ensembl:
ENSCHAG00000006916
UniProt:
A0A6P3VM24
LinkDB
All DBs
Position
24:8086742..8094059
Genome browser
AA seq
644 aa
AA seq
DB search
MKRVRTEQIQYAVTQYLKRRQYVDSEGNLKIAKLSQTAEEMAASLTVQTESSCANIVSAA
PCQADVHQYETQFSRLRTFLLEAEVPWGQEVGCVLYPLFLYLYLDMVRCGLRPAADGFYG
RFHGPFLQDTEQRVTVELLKGVQTAQDVAANPKLCALLEHKYVVHLSDAAYSYLLRYLQS
DDNGALCRVLSTHLQLEVTPTPRTHYQLYGNTPGNNNNNNNTTTTTTTTTTTNNTSASNT
SGPTPDNVPDGSEDKTGVPQNEAALEALQEAIRRVRDAPPSLTTVCFYAFQHTDQQLNAA
EVSGDSRLLAAAFDSSAVKLWSLRARKLKAGPHRADVSKVRLACDLLEEEADDEEALGSE
MRTLRGHCGPVYRAAFLTDGRGQGQSLLSCSEDATVRLWDLSSFTCAALYRGHAYPVWDV
SVSPCGLYFASGSQDRTARLWTPSRTYPLRLYAGHLSDVDCVRFHPNSGYLASGSADKTV
RLWSAQQGASVRLFTGHRGPVLALAFSPDGRYLASGGEDQRLKLWDLTSGGLLKDLRGHT
DAITGLSFSPDSSLVASSSLDNSVRVWDIRNSSAAGGGGGAAGATATTGGGSGAAAAAAA
VAADGSSSELVGLYTGNTSSILNVQFMACNLLMVTGTAQEKQEL
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgagtacggaccgaacagattcaatacgccgtgactcagtacctgaagaggcgg
cagtatgtggactccgagggcaacctgaagatcgccaagctctcgcaaaccgccgaggag
atggctgccagcctcactgtccagacagaatccagttgtgccaacatagtctcagctgcc
ccatgtcaggccgacgtccatcagtacgagacccagttctccaggctacggaccttcctc
ctggaggccgaggttccgtgggggcaggaggtgggctgcgtgctctacccgctcttcctc
tacctgtacctggacatggtgcgctgcgggctccggccagccgccgacggcttctacggt
cgcttccacggccccttcctgcaggacaccgagcaaagggtcaccgtggagctgctcaag
ggcgtgcagacggcgcaggatgtggcagctaaccccaagctgtgcgccctcctcgagcac
aagtacgtggttcacctgtcagacgcggcctacagctacctgctgcgctacctgcagagc
gacgacaacggagccctctgccgtgtgctcagcacgcacctgcagctggaggtcacgccc
acgccacgcacacactaccagctctacggcaacacgcccggcaacaacaacaacaacaac
aacaccaccaccactacaaccaccaccaccaccaccaacaacacctctgcatccaacacc
tcaggtcccactccagacaacgtccccgacggctccgaagacaagacgggcgtcccgcag
aacgaggcggcactggaggcgctccaggaggccatccgccgcgtgcgggacgccccgccc
tcgctcaccaccgtctgcttctacgccttccagcacacggaccagcagctcaacgccgcc
gaggtgtccggcgacagccgcctgctggccgcggccttcgacagctcggccgtcaagctg
tggagcctgcgcgcgcgcaagctcaaggccggcccgcaccgcgccgacgtctccaaggtc
cggctggcctgcgacctgctggaggaggaggccgacgatgaggaggcgttgggcagcgag
atgcggacgctgcggggccactgtggccctgtgtaccgcgccgccttcctgacggacggc
cgtggccagggccagagcctgctctcctgctcggaggacgccacggtgcgcctgtgggac
ctgtccagcttcacgtgcgccgcgctctaccgcggccacgcctacccggtgtgggacgtc
tccgtgagcccgtgcggcctctacttcgccagcggctcgcaggaccgcacggcccgcctc
tggacgccgtcgcgcacctacccgctccgcctctacgccggccacctgtcggacgtggac
tgcgtccgtttccatcccaactccggctacctggcctcgggctcggccgacaagacggtg
cggctgtggagcgcccagcagggggcgtcggtgcgcctcttcacgggccaccggggcccc
gtgctggccctggccttctcgccggacgggcggtacctggcgtcgggcggcgaggaccag
cggctgaagttgtgggacctgacgtccggcgggctgctcaaggacctgcgcggacacaca
gacgccatcacaggcctctcgttcagcccggactccagcctggtggcctcgtcctcgctg
gacaactcggtgcgtgtgtgggacatccgcaacagcagcgccgcaggtggtggtggtggg
gcggctggagccacggcgacaacaggtggaggttctggtgcggccgctgcagcggcggcg
gttgcagcggacggctcgagcagcgagctggtcggtctctacacgggcaacaccagcagt
atcctcaatgtacagttcatggcgtgtaacctgttaatggtgacgggcacggctcaggag
aaacaggaactctag
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