KEGG   Clupea harengus (Atlantic herring): 105893883
Entry
105893883         CDS       T09045                                 
Symbol
rfc5
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char03030  DNA replication
char03410  Base excision repair
char03420  Nucleotide excision repair
char03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:char00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    105893883 (rfc5)
   03410 Base excision repair
    105893883 (rfc5)
   03420 Nucleotide excision repair
    105893883 (rfc5)
   03430 Mismatch repair
    105893883 (rfc5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:char03032]
    105893883 (rfc5)
   03036 Chromosome and associated proteins [BR:char03036]
    105893883 (rfc5)
   03400 DNA repair and recombination proteins [BR:char03400]
    105893883 (rfc5)
DNA replication proteins [BR:char03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    105893883 (rfc5)
  DNA Replication Termination Factors
   ELG1-RFC complex
    105893883 (rfc5)
Chromosome and associated proteins [BR:char03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    105893883 (rfc5)
DNA repair and recombination proteins [BR:char03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     105893883 (rfc5)
  Check point factors
   HRAD17(Rad24)-RFC complex
    105893883 (rfc5)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 RCF1-5-like_lid AAA_11 RuvB_N AAA_22 AAA_14 ResIII AAA_16 AAA_24 AAA_assoc_2 DEAD AAA_7 DUF815 PhoH ATPase_2 AAA_5 AAA_19 AAA_30 TniB TIP49 AAA_2 Mg_chelatase nSTAND3 bpMoxR DNAX_ATPase_lid Thioredoxin_6 T2SSE RNA_helicase
Other DBs
NCBI-GeneID: 105893883
NCBI-ProteinID: XP_012675805
Ensembl: ENSCHAG00000007320
UniProt: A0A6P3VM45
LinkDB
Position
7:complement(19029069..19035703)
AA seq 335 aa
MTSTSKVPLESRNLPWVEKYRPQTLDDLISHKDILSTLQKFISEERLPHLLFYGPPGTGK
TSTILACAKQLYKEKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDE
ADAMTQDAQNALRRVIEKFTENTRFCMICNYLSKIIPALQSRCTRFRFGPLSQDQMIPRL
EYVIRQEQVDVSPDGMKALVTLSGGDMRRSLNILQSTSMAYGKVTEDSVYTCTGHPLRSD
IANILDWSLNKDFTTAYNLIFQLKTLKGLALHDILTEVHLLVHRVDFPPTIRMGLLIKLA
DIEYRLASGTSEKIQLSSMVGAFQAVRDMVVSEAS
NT seq 1008 nt   +upstreamnt  +downstreamnt
atgacatcaaccagcaaagtacctttagaatcaaggaatctaccctgggtggaaaagtac
agacctcagactcttgatgacttgatctcccacaaagatattctaagcacactccagaag
ttcataagtgaggaaaggctgccccacttgctcttctatggacctcctggaacagggaaa
acatcaaccattctggcctgtgctaaacaactttacaaagaaaaagagttcaattccatg
gttcttgagcttaatgcatcagacgacagaggcattgatgttgtgagggggccaatcttg
agtttcgccagcaccagaaccattttcaagaagggattcaaattggtgatattagatgaa
gctgatgctatgacccaggatgcccagaatgctttgaggagagtcattgagaagttcaca
gaaaataccagattctgcatgatctgtaactacctgtcgaagattatccctgccctgcag
tcccgatgcacccgtttccgctttggcccactgtcccaggaccagatgattcctaggctg
gagtatgtcatccggcaagagcaggtggatgtatcaccagatggcatgaaggctcttgtg
accctgtcgggaggagacatgagacgatctctgaatattttacagagcaccagcatggcc
tatgggaaggtaacggaggactctgtgtacacctgcactggacaccctctcaggtcagac
attgccaacatcctcgactggtcactgaacaaggatttcaccacggcgtacaacttaatt
tttcaactgaaaacactgaaaggtctggcattgcacgacatcttgactgaagtccatctt
ctagtacacagagttgactttcctcctactattcgaatgggcttgctcatcaagttggca
gacattgagtatcgactggcttcgggaaccagtgagaagattcagctgagctcaatggtt
ggagcttttcaagcagtgagagacatggtagtcagtgaggcatcataa

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