Clupea harengus (Atlantic herring): 105893883
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Entry
105893883 CDS
T09045
Symbol
rfc5
Name
(RefSeq) replication factor C subunit 5
KO
K10756
replication factor C subunit 3/5
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03030
DNA replication
char03410
Base excision repair
char03420
Nucleotide excision repair
char03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
105893883 (rfc5)
03410 Base excision repair
105893883 (rfc5)
03420 Nucleotide excision repair
105893883 (rfc5)
03430 Mismatch repair
105893883 (rfc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
char03032
]
105893883 (rfc5)
03036 Chromosome and associated proteins [BR:
char03036
]
105893883 (rfc5)
03400 DNA repair and recombination proteins [BR:
char03400
]
105893883 (rfc5)
DNA replication proteins [BR:
char03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
105893883 (rfc5)
DNA Replication Termination Factors
ELG1-RFC complex
105893883 (rfc5)
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
105893883 (rfc5)
DNA repair and recombination proteins [BR:
char03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
105893883 (rfc5)
Check point factors
HRAD17(Rad24)-RFC complex
105893883 (rfc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_11
RuvB_N
AAA_22
AAA_14
ResIII
AAA_16
AAA_24
AAA_assoc_2
DEAD
AAA_7
DUF815
PhoH
ATPase_2
AAA_5
AAA_19
AAA_30
TniB
TIP49
AAA_2
Mg_chelatase
nSTAND3
bpMoxR
DNAX_ATPase_lid
Thioredoxin_6
T2SSE
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
105893883
NCBI-ProteinID:
XP_012675805
Ensembl:
ENSCHAG00000007320
UniProt:
A0A6P3VM45
LinkDB
All DBs
Position
7:complement(19029069..19035703)
Genome browser
AA seq
335 aa
AA seq
DB search
MTSTSKVPLESRNLPWVEKYRPQTLDDLISHKDILSTLQKFISEERLPHLLFYGPPGTGK
TSTILACAKQLYKEKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDE
ADAMTQDAQNALRRVIEKFTENTRFCMICNYLSKIIPALQSRCTRFRFGPLSQDQMIPRL
EYVIRQEQVDVSPDGMKALVTLSGGDMRRSLNILQSTSMAYGKVTEDSVYTCTGHPLRSD
IANILDWSLNKDFTTAYNLIFQLKTLKGLALHDILTEVHLLVHRVDFPPTIRMGLLIKLA
DIEYRLASGTSEKIQLSSMVGAFQAVRDMVVSEAS
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgacatcaaccagcaaagtacctttagaatcaaggaatctaccctgggtggaaaagtac
agacctcagactcttgatgacttgatctcccacaaagatattctaagcacactccagaag
ttcataagtgaggaaaggctgccccacttgctcttctatggacctcctggaacagggaaa
acatcaaccattctggcctgtgctaaacaactttacaaagaaaaagagttcaattccatg
gttcttgagcttaatgcatcagacgacagaggcattgatgttgtgagggggccaatcttg
agtttcgccagcaccagaaccattttcaagaagggattcaaattggtgatattagatgaa
gctgatgctatgacccaggatgcccagaatgctttgaggagagtcattgagaagttcaca
gaaaataccagattctgcatgatctgtaactacctgtcgaagattatccctgccctgcag
tcccgatgcacccgtttccgctttggcccactgtcccaggaccagatgattcctaggctg
gagtatgtcatccggcaagagcaggtggatgtatcaccagatggcatgaaggctcttgtg
accctgtcgggaggagacatgagacgatctctgaatattttacagagcaccagcatggcc
tatgggaaggtaacggaggactctgtgtacacctgcactggacaccctctcaggtcagac
attgccaacatcctcgactggtcactgaacaaggatttcaccacggcgtacaacttaatt
tttcaactgaaaacactgaaaggtctggcattgcacgacatcttgactgaagtccatctt
ctagtacacagagttgactttcctcctactattcgaatgggcttgctcatcaagttggca
gacattgagtatcgactggcttcgggaaccagtgagaagattcagctgagctcaatggtt
ggagcttttcaagcagtgagagacatggtagtcagtgaggcatcataa
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integrated database retrieval system