Clupea harengus (Atlantic herring): 105893937
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Entry
105893937 CDS
T09045
Name
(RefSeq) SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X1
KO
K24313
SH3 domain and tetratricopeptide repeat-containing protein
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105893937
Membrane trafficking [BR:
char04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
105893937
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_2
TPR_1
TPR_8
TPR_7
SH3_1
ARM_TT21_4th
TPR_NPHP3
SH3_2
TPR_10
SH3_9
Motif
Other DBs
NCBI-GeneID:
105893937
NCBI-ProteinID:
XP_031441024
Ensembl:
ENSCHAG00000011076
UniProt:
A0A6P8GP60
LinkDB
All DBs
Position
18:6728057..6739746
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AA seq
1348 aa
AA seq
DB search
MSTVAHRNSRVQVGNGVECETARPRRTLRHELSAEQYSDHDLDLNKDTYGTREMEQTPSR
GTGSIKRQCSTSEDNIPTVLPLQLAMVQGPDRLPDSEGAQDVLRGKLRVLEADPGKVTTL
LSELSANLLTINSEENALYVTFKTFEEIWKFSTYYKMGFLGQCMENLLLDQNFWLNSLDQ
ENAGIEISIKEDTMNLMYKGFLMQEGSFYATCTSNQMFDSSTSGSDLYLEKGDIALFEPP
FLGSGWTVLSLADGSRGTKSNPGLEPVIPFYEWFLKSCPEGAIVGKGKETHSFPYQFATG
ACVATEDYDGSAPDELSFEAGDRIAVVGLLVSCFQWFLGRRENNGDLGLVQTHLVKPTDS
LCESTDIFLTTEDRLFFKMEQEKIKEETIDMLKRTSQSEVGTIYQLDLISDSPAISSEIA
HPSEDGDVNAKTEVELKSKIVDYLHKLTISNGTATGTARSSDDVDMSSGKELESKDMPNF
IVCSEKDGTSPDGHHSLLSFLGSPDFREELRSLYTSYPEFLMSCFHGHADEEELVAYLGV
ARETARKKRQLWAQSRICFLLGQMCASRSKFSQARVYYEEALSVPRDCFTDMHMLVALYA
NLALIYLTQKNVEKYFALSERLAALMMGMPDAISGTEDPDVLKFLLRKAILSRNKPAEAR
GCFLLAKLHLKLGKAVSAVPFLERLQILSSQLSGVCEGTRSHGYLLLGRLYSDVGLPYLA
VSSAHQASLQTSTTLSDCLCAISLLLENALRLYGAAVPAQVAPYLTRAVSLARQGTELRL
AHVHALCLSWLFHQHGLPDRAVGYMRAFLLDVGSESGMTQADATDALIWLAWLYICGGRP
QVALDVLDAVLASLPEHCTTQQEGVVYNMRAIALGRTGNLRHAAESYRAAAEVCEEFEDR
HNWAVALANLGLLCLRAKAKSLAEEHLVQAVELFSELEEEELDGHELSFITVLLELGQHY
VSQGYHERGKIYYEWGLLLAIQSDHSESQLKATRHLCHLYAQVCPNEAQCIIYNEHQLAL
VHHMGDRSVEADILETISQLYLSLGTEKAYKSALEHTKQSLGIFIDLGMKKKEAQAWLQA
GKIYHMLRQTELVELYVQVAQDVGLSTGDTLFILELLEAAGDIFFNSTAERDKAVCFYRD
RALPIAVKTGSVCSQLRLCNKLAQLLLQMRVCEEAVEFAQTALDLSVSLGDDLNERVAFH
RLATLYHCLGQFEMAEHHYLKALSLCPAPLQYDEETLYYVRVYQTLGDIIFYDLKDPFDA
AGYYHLALAAAMDLGNKKAQLNLCTRLATIYHNFLMDRELSLFFYQRARAFASDLNVRRI
NLAPDQNFQSTAQYRMDPQPLSVAVSTG
NT seq
4047 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacagtcgcacatcgaaattcccgtgttcaagtcggtaacggagttgaatgcgag
actgctcgaccacgtcgaacactccgtcatgaattatctgcagagcaatattcagaccat
gacctggatttaaacaaggacacctacggcaccagggaaatggagcaaacgccttcaagg
ggcactgggagcatcaagcgtcagtgctcaacttctgaggacaacattcccacagtgctg
cctttgcagctggcaatggtacaagggccggacaggcttcctgacagcgagggggcacag
gatgtgctgagagggaagctccgtgtgctggaggctgaccctggaaaggtcacgaccctg
ctttcagagctctctgccaatctgttaactataaacagtgaagagaacgctctatatgtg
accttcaaaaccttcgaagaaatctggaagttcagcacgtattacaaaatgggattcctg
gggcagtgcatggagaacttgctgctggaccagaacttctggctgaactcactggaccag
gagaatgctggaatagagatctccatcaaggaggacaccatgaacctcatgtacaaaggc
ttcctcatgcaggaaggatccttctatgcaacctgcacctccaaccaaatgtttgacagc
tcaacttcaggaagtgacctttatttggagaaaggcgacatcgccctgtttgaacccccc
tttttgggctcaggatggacagtactgtccttggcagatgggtcacgaggaaccaaatcc
aatccaggcctggagccagttattcctttctatgagtggttcctgaagtcgtgtcctgaa
ggcgccattgttggcaaaggaaaagaaactcacagtttcccttatcaatttgccacaggt
gcctgtgtagccactgaggattatgatggcagcgcaccagacgagctgagctttgaagct
ggcgatcgcatcgctgtggtgggcctgctggtgtcctgcttccagtggttcctagggagg
agggagaacaacggagacctaggactggtgcagacacatctggtcaaacccacagatagt
ctttgtgagtcaaccgacatctttctaaccacagaagacaggttgttctttaaaatggaa
caggaaaaaattaaggaggagacgattgacatgttgaaaaggacatcccagagtgaggtt
gggactatctaccaacttgatttgatcagtgattcccctgctatttcaagtgaaatagct
catccctcagaagatggagatgtgaatgccaagacagaagtggaactgaaaagtaaaatt
gtggattacctgcacaaactgaccatatctaatggaacagccactggaactgcacggtct
tctgatgacgtggacatgtcttcaggcaaggaactggaaagcaaagacatgcccaacttc
atagtctgctccgaaaaagatggcaccagccccgatgggcaccactccctcctatccttc
ctgggcagccctgatttccgtgaggagttgcgttccctgtacacctcctacccagaattc
ctcatgtcctgcttccacggtcacgcagacgaggaggagctggtggcctacctgggggtc
gccagggagacggccaggaagaagcgccagttgtgggctcagagcaggatctgcttcctg
ttgggtcagatgtgcgccagcaggtcaaagttctcccaggctcgagtctactacgaggag
gccttgagtgtgccgagggactgtttcacggacatgcatatgttggtggcactctacgcc
aacctggcactcatctacctgacacagaaaaatgtagagaagtatttcgccctgtcggaa
cgcctggccgcactgatgatgggcatgccagacgccatctcgggcacggaggatcccgat
gtcctcaagttcctgctgagaaaagccatcttgtctcgcaacaaacccgccgaggcccgt
ggctgtttcctcctcgccaagctccacctgaagctcgggaaggccgtgagcgccgtgccc
ttcctggagagacttcagatcctctccagtcagctttccggagtctgcgaagggacccgc
agccacggatacctgctgttggggagactttacagtgacgtaggcttgccctacctcgcc
gtcagctcagcgcaccaggcctcgctgcagacgtccaccaccctctcggactgcctctgc
gccatctccctgttgctggagaacgcgctccggctctacggcgccgccgtcccggcgcag
gtcgccccctacctcactcgggccgtctcgctggctcgccaaggcacggagcttcgcctg
gctcacgtccacgcgctctgcctctcctggctgttccatcagcacggcttgcccgaccgc
gccgtgggctacatgcgggcgttcctcctggacgtcggttcggagtccgggatgacccag
gccgacgccacagacgccctgatttggctggcctggctgtacatctgcggcgggcggccc
caggtggccctggacgtccttgacgcagttctggcctcgctgccggagcactgtaccacg
cagcaggagggcgtggtgtacaacatgcgagcgatcgccttaggacgcacgggcaacctc
aggcacgccgccgagagttaccgggcagcggcggaagtgtgcgaggagttcgaggacagg
cacaactgggccgtggcgctggctaatctaggcctcttgtgcctccgggccaaagcaaag
agcctggccgaggagcacctggtccaggcggtggagctgttctctgagctggaggaagag
gagctggatggccacgagctgagcttcatcaccgtgctgctggagctgggccagcattat
gtgtcccagggttaccacgagagaggaaagatctactatgagtggggtctgctgcttgcc
atccaatcagaccactcagagagtcagctcaaagccacccgtcacttgtgtcacctgtac
gcccaggtgtgtccaaatgaggcccaatgcatcatctacaatgaacaccagctggctcta
gtgcaccacatgggggatcgcagtgtggaggcagacattttggagacgatcagtcaactc
tacctaagcctaggcactgaaaaggcctacaagtcagcactggaacacaccaaacagagc
ctgggcatcttcatagatctgggcatgaagaagaaggaggcacaagcctggctccaggct
gggaagatctaccacatgctgaggcagacggagctagtggagctctatgtgcaggtggca
caggacgttggactcagtactggagacacactgttcatactggagctgctggaagccgct
ggggacatcttcttcaacagcacagcggagagagacaaggctgtctgcttttacagggac
cgtgcactccccatcgctgtgaagacaggtagtgtgtgctcccagttgaggctgtgtaat
aaactggcgcagctcctgctgcagatgagagtgtgtgaggaggccgtggagttcgctcag
actgctctggacctcagtgtgtcactcggagacgacctgaatgagcgggtggccttccat
cggctggccactctgtaccactgcctgggtcagtttgagatggctgagcaccactacctt
aaggccctgtcactctgtcctgcaccactacagtatgacgaggagaccctgtactacgtc
agagtctaccagaccttaggggacattatcttctatgatctcaaggaccccttcgatgct
gctgggtactaccacctcgccttggccgccgccatggacctgggcaataagaaggctcag
ctgaacctgtgcacccgtctggccaccatctaccacaacttcctcatggaccgggagctg
tcgcttttcttttaccagcgggcgcgggcctttgcgtcggacctcaacgttcgccgcatc
aacctggcgcctgatcagaacttccagagcacggctcagtatagaatggacccccagccc
ttaagtgtggctgtctctacaggataa
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