KEGG   Clupea harengus (Atlantic herring): 105893949
Entry
105893949         CDS       T09045                                 
Symbol
per1b
Name
(RefSeq) LOW QUALITY PROTEIN: period circadian protein homolog 1b
  KO
K21944  period circadian protein 1
Organism
char  Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:char00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:char03400]
    105893949 (per1b)
DNA repair and recombination proteins [BR:char03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    105893949 (per1b)
SSDB
Motif
Pfam: Period_C Per3-like_PAS-A bHLH_PER PAS_3 PAS_11 PAS
Other DBs
NCBI-GeneID: 105893949
NCBI-ProteinID: XP_031440499
Ensembl: ENSCHAG00000013155
UniProt: A0A6P8GMU2
LinkDB
Position
18:complement(7019850..7039644)
AA seq 1414 aa
MSYENSSPAPSHDARGEVGRTEDEEEAGRGSPDMSGGCTSEGASRGRGSSPGGVSEGAGG
SSGDMRGPNSDDTDTRSSGNDSGERESEGGMERGAGSRGXQSARSYQSLSSHNCKDSGMM
LDXTESNKSSNSHSPSPPSSSLGYSLLSGGSSERDPPSTSGCSSDQXARVKTQKELMKAL
KELKIRLPAERKPKGRSSTLNALKYALSCVKQVRANQEYYHQWSVEECHGLSMDLSTFTI
EELDNITSEYTLKNTDTFTMAVSFLSGKVVYISPHGASLMRCKPERLQGALFSELLAPQD
VSTFYSSTAPCRLPPWAACIGSASPPVDCTQEKSMFCRISADRMHGSELRYYPFGLTPYQ
LTLRESDAADPQPCCLLIAEKVHSGYEAPRIPVDKRIFTTSHTPSCLFQDVDERAVPLLG
YLPQDLVGTPVLLYIHPEDRHIMVAIHKKILQFAGQPFDHSPLRMCARSGEYLTIDTSWS
SFVNPWSRKVAFIVGRHKVRTSPLNEDVFTPPRGAEGQVMVPEIPQMSQQIHRLLAQPVH
CGGSQGYSSLTSSGSHEQHHSVASSSESNGPALEDAVQLLKPMTFQQICKDVHMVKTSGQ
QVFIESRNRPSARKHANAGVSGSLRAIGASQPITSTKTQTAPPPKTTAPSELMTKESPSP
YSYQQINCLDSIVRYLDGCNVPNAKRKCGTSSCTASSTSDDDKQKEKTNNTKGPAVALVG
EAPPLPPLALPKPESVASVTSQCSFSSTIVHVGDKKPPESDIVMEEATHTLTSAPPTVQV
STTPTTTLSPPPVLMTPSPSPAPPAVREARRGGGGRLGLTKQVLSAHTQQEEQNFLFRFR
DISQLRVFDPATVLKRHNTTPLARGLRSSRDYPAAGSSSRRRGRGGKRLKHQETINQGSP
ALRGTTGATLPPTSSFPLGPATTSSSWPTSVGSQASLPSVPYPPGMLPLYPLYPPLSQPL
ADATALQTGLRFPMQNVQMPPQMVPPMMALVLPNYMFPQINAPLAQPCPAIAAAGTVPFF
NPNAAFVPPFAAAAGVNPNVALPTLQQMPTATQVPRPTSRSSTPHSISQREGRADREGAE
SMLLPSSRCSSPLNLLQLEEPLSNRLEATPTGGQGDQFMTNQRGAAEDSKENDNGEANDS
TQDAMSTSSEFLDLLLQEDSRSGTGSAGSGSRSLGTGSSGSGLGSSGSGSNGCSSSESRT
RSSQSSHTSKYFGSIDSSENDHSRKQPAGGDGEAQFIKCVLQDPIWLLMANTDDKVMMTY
QLPIRDRETVLREDRMALRAMQKSQPRFSEEQKRELSQVHPWIRTGRLPPAINISACVDC
KSSTCVPPSAPFDVEIHEMELCSALVTNEGASAEKLAQPDTAMEQGEGHVNVKRSDGGRV
AETDISLAKDQEMVTEEQEITSQTEQGRVTEMTH
NT seq 4245 nt   +upstreamnt  +downstreamnt
atgagttatgagaactccagcccggcgcctagccatgacgcacggggcgaagtggggcgt
accgaggatgaggaagaggcggggcgagggtctccggacatgagcggaggctgtacctcc
gagggcgccagcagggggcgtggctcgtccccgggcggagtgtcagaaggagccgggggc
tcatcgggggacatgcgaggcccgaactcggacgacacggacacgcggtcgagcggcaac
gactcgggcgagcgggagagcgagggaggcatggagcgaggggccgggtccagagggnng
cagtccgcgcgcagctaccagagcttgtccagccacaactgcaaggactctggaatgatg
ctggacnacacggagagcaacaagagctctaactcccacagcccatccccccccagcagt
tctctgggctacagcctactgagcgggggcagctcggagcgcgacccccccagcaccagc
ggctgcagcagtgaccagntcgcacgcgtgaagacccagaaggagctcatgaaggccctg
aaggagctcaagatccgcctgccggccgagcgcaagcccaagggccgctcgtccacgctc
aacgcgctcaagtacgcgctcagctgcgtcaagcaagtccgagctaatcaagagtactac
caccagtggagtgttgaggagtgccatggcctcagtatggatctgtccacttttaccata
gaagagctggacaacatcacatctgagtacacactcaagaatacagacaccttcaccatg
gccgtgtccttcctgtcggggaaggtggtgtacatctccccccacggcgcctcgctgatg
cgctgcaagcccgagcgcctgcagggggcgctcttctctgagctgctggcaccgcaggac
gtcagcaccttctacagcagcaccgcgccctgccgcctcccgccctgggccgcctgcatc
ggctccgcttccccgccagtggactgcacgcaggagaagtcgatgttctgtcggatcagc
gctgaccggatgcacggcagcgagttgcggtactacccattcggcctgacgccctaccag
ctgaccctccgtgagtcggacgccgccgacccccagccctgctgcttgctcatcgccgag
aaggtccattcaggatacgaagctcctcgtattcctgtcgataaaaggatcttcaccacc
agccacactcccagctgtctctttcaagatgtggacgagagagctgtgccgttgctaggc
tacctgccacaggacttggtaggcactccagtgctgctctacattcaccctgaggacaga
cacatcatggtggctattcacaagaagatcctccagtttgccgggcagcccttcgaccac
tctcccctacggatgtgcgcacgcagcggggagtacctgaccattgacacctcctggtcc
tccttcgtcaacccctggagcaggaaggtggccttcatcgtcggccgccacaaagtcaga
acgagcccactgaatgaggacgtgttcacgccgccacggggtgccgagggccaggtgatg
gtgccggagatcccgcagatgagccagcagatccaccggctcctggcgcagccggtgcac
tgcggcggctcacagggctacagcagcctgaccagcagcggctcgcacgagcagcaccac
agcgttgcctcctcgtccgagagcaacgggcccgcgctggaggacgccgtacagctgctc
aagccgatgaccttccagcagatctgcaaggacgtccacatggtgaagaccagcggccag
caggtgttcattgagtccagaaatcgcccatcggcccggaaacacgccaatgctggggtc
agtgggtctttacgagccattggtgcctctcagccaatcaccagcacgaaaacacagacg
gccccaccccccaagaccacggctccttctgaactcatgacgaaggagtcgcctagccct
tactcctaccagcagatcaactgcctggacagcatcgtacgatacttggatggctgcaat
gtgcccaacgccaagaggaagtgtggcacctcctcgtgcacagcctcctctacgtctgac
gacgacaagcagaaggagaaaaccaacaacactaaaggtcctgcggtagctcttgtaggg
gaggctcctcctctaccccccctcgcgttgcccaaacccgaaagcgttgcctcggttacc
tctcagtgcagtttcagcagcaccatcgtccacgtgggagacaagaaaccgcctgagtca
gacattgtgatggaggaagccactcacaccctgacatcagcccctcccactgtccaagta
tcgaccacgcccacaaccacactgtctcctccccccgtgctcatgacgccgtctccaagc
cctgcgcctccggccgtgagggaggctcggcgaggaggaggaggaaggctgggcctgacg
aagcaggtgctgtcggcgcacacgcagcaggaggagcagaacttcctgtttcgcttccgt
gacatcagccagctgcgcgtgttcgacccggccaccgtgctgaagagacacaacaccacg
ccactagccagaggtctgcgctcttcccgtgactaccctgctgcaggcagcagtagtcgg
cggcgcggccgaggtggcaagcgcctgaagcaccaggagacaatcaaccagggcagcccg
gctctccgaggcaccacaggggccaccttgccccccacctcctccttccccctgggtccc
gccactacctcctcatcctggcccacctctgtgggctcccaggccagcctgccgtctgtg
ccctacccgccgggcatgctgcccctctacccgctctacccgccgctctcgcaaccgctg
gccgacgccaccgcgctgcagacgggcctgcgcttccccatgcagaacgtccagatgccg
ccgcagatggtgccccccatgatggcactggtgctgcccaactacatgttcccgcagata
aacgcgcccctcgcccagccgtgccccgccatcgccgccgccggcactgtgcccttcttc
aaccccaacgcggccttcgtgccccccttcgcggccgcagccggggtcaaccccaacgtg
gcgctccccaccctgcagcagatgcctaccgccacccaggtccccaggcccacgtcccgc
tccagcaccccccactccatcagccagagggagggtcgggccgaccgggagggggcagag
tccatgctcctcccctccagccgatgctcctcccccctcaacctgctccagctggaggag
ccactcagcaaccgacttgaggccacgcccacaggagggcaaggggaccagttcatgacc
aatcaaagaggagcagctgaggactccaaagagaatgacaatggcgaggccaatgattcc
acgcaggacgccatgtccacctccagtgaattcctggacctcctgctccaggaggactcc
cgatcgggcaccggatcggccggctcaggctccaggtccttgggcacggggtcctctggt
tcgggcctggggtcctcaggttcaggctccaacggctgcagctcgtcagagagcaggaca
agaagcagccagagcagccacaccagtaagtactttggcagcatcgactcgtcagagaat
gaccactcccggaagcagccagcagggggcgacggagaggctcagttcatcaagtgtgtg
ctgcaggaccccatctggctcctcatggccaacactgacgacaaggtcatgatgacttac
cagctaccaatcagggaccgtgagacggtgctgcgcgaggaccgcatggcactgagggcc
atgcagaagagccagccgcgcttctccgaggagcagaagcgagagctgagccaggtccac
ccgtggattcgcaccggacgcctgccccccgccatcaacatatcggcatgcgtagattgc
aaatcctctacctgcgtcccgccatcagcaccttttgatgtggagatccacgagatggag
ctctgcagtgctctcgtcacgaacgagggggcatccgccgagaaactggcccagcccgac
accgccatggagcagggcgaggggcacgtgaacgtgaagagatcagatggaggaagagtg
gcggagacggacatatcgctggccaaagaccaggaaatggttacggaggagcaggaaatt
acctcacaaacggagcagggaagagtcacagagatgacccactga

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