Clupea harengus (Atlantic herring): 105894366
Help
Entry
105894366 CDS
T09045
Symbol
usp39
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105894366 (usp39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
char03041
]
105894366 (usp39)
Spliceosome [BR:
char03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
105894366 (usp39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
105894366
NCBI-ProteinID:
XP_031426884
Ensembl:
ENSCHAG00000009596
UniProt:
A0A6P8FL50
LinkDB
All DBs
Position
7:complement(28218741..28227772)
Genome browser
AA seq
501 aa
AA seq
DB search
MATIKREREIDEDEDSEVPVKVSRTHEAEDKRSRHCPYLDTINRSVLDFDFEKLCSISLS
HINVYACLVCGKYFQGRGQKSHAYTHSVQFTHHVFLNLHTLKFYCLPDNYEIIDSSLEDI
TYVLKPTFTRQHIGGLDKQGRLYRAYDGTTYLPGIVGLNNIKANDYANAVLQALSNVPPL
RNYFLEEENYRTIRRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLCSKK
NFQITKQGDSVDFLSWFLNALHGALGGTKKKPSIITKVFQGSMRIFSKKLPHPDLPQEEK
EALLLTEDYQEVMSEAPFLYLTLDLPTAPLYKDEKEQLIIPQVPLFNIFTKFNGNMEKEY
KTYKENFLKRFQLTRLPPYLIFYIKRFNKNNFFVEKNPTIVNFPITCVDLREYLTEEAQV
TEKSTTYDLVANVVHDGKPTEGSYRIHVLHHGTGKWYEMQDLQVTDILPQMITLSEAYIQ
IWKRRPNEEEDEDEKDSHTGA
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccataaagagggaacgtgaaatcgacgaagacgaagattctgaagtacctgta
aaagtgagtcgaacacatgaggcggaggacaagagaagtcgccattgcccctaccttgac
accattaacaggagcgttctggactttgactttgagaagctgtgctccatctcgttgtcc
cacataaatgtgtatgcctgtctggtttgtgggaaatacttccaggggagaggacaaaag
tctcatgcctacacacacagtgtacagttcactcaccatgtattccttaatctgcacaca
ctgaaattctactgcctgcctgacaattacgagatcattgactcctcgctggaggacatc
acgtacgtgctgaagcctacatttactcgccagcacatcggcggtctggacaagcagggc
cgtctctaccgtgcctatgacggcacgacctacctgcctggcatcgttgggctcaacaac
attaaggccaatgactatgccaacgccgtgctacaggccctctctaatgtacctccgctg
aggaactatttcctggaggaggagaactaccgcacgattcgccggcccccgggtgacatc
atgttcctgctggtgcagcgcttcggggagctgatgaggaagctgtggaacccgcgcaac
ttcaaggcccacgtctcgccccacgagatgctgcaggccgtcgtgctctgctccaagaag
aacttccagatcaccaaacagggggactctgtggacttcctgtcttggtttctcaatgct
ctgcatggggccttgggtggcaccaagaagaaaccatccatcatcacaaaagtgttccag
ggttctatgaggatcttctctaagaaactgcctcatcccgacttgccacaagaggagaag
gaggccctgctgctgacggaggactaccaggaggtgatgagtgaggcccccttcctctac
ctgacgctggacctccccactgctcccctctacaaggatgagaaggagcagctcatcatc
ccacaggtccccctcttcaacatcttcaccaagttcaatggcaacatggagaaggagtac
aagacgtacaaggagaacttcctgaagcggttccagctgacgcggctgcctccctatctc
atcttctacatcaagaggttcaacaagaacaacttctttgtggagaagaaccccaccatc
gtgaacttccccatcacgtgtgtggacctgcgcgagtatctgacagaagaggcccaagtt
acggagaaaagcacgacctatgacctcgtagccaacgtagtgcatgatgggaaaccgaca
gaaggatcctacagaatccacgttttacatcatggcactgggaagtggtatgagatgcag
gatctgcaggtgacagatattctcccccagatgatcacgctgtctgaggcgtatatacag
atctggaagagaagaccaaatgaagaggaagatgaagatgaaaaggacagtcacacaggg
gcctga
DBGET
integrated database retrieval system
