Clupea harengus (Atlantic herring): 105894383
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Entry
105894383 CDS
T09045
Symbol
vps13a
Name
(RefSeq) vacuolar protein sorting-associated protein 13A
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105894383 (vps13a)
Membrane trafficking [BR:
char04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
105894383 (vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
ATG2_CAD
Motif
Other DBs
NCBI-GeneID:
105894383
NCBI-ProteinID:
XP_031426865
Ensembl:
ENSCHAG00000021136
UniProt:
A0A6P8FTS1
LinkDB
All DBs
Position
7:27538706..27600745
Genome browser
AA seq
3246 aa
AA seq
DB search
MVFESLVVDVLNRFLGDYVVNLDCSQLSLGIWGGDAILKNLEIKENALSQLDIPFKVRAG
HIGRLELKIPWKNLYTQSVEATLDGVYLLIVPTASIKYDAEKEERQLQEARQRELQRIEE
TKQRAAEQENPQLEKQDTFVEKLVTQVIKNLQVTISNIHIRYEDDITNPSSPISFGVSLQ
NLSLQTADANWTPCLLDDKAKLFFKLVRLDNLFAYWNTNSELYSNHTPDEALRCLKQNVA
VEGYIPQDYQYVFRPISARAKLCMNPRTDVDLSAPKVDLIVSLPDVSVELSRPQYVSILE
LLGSVDMMSRNLPYRKYRPDLPLNNNAFLWWRYVITGILEVNVRPRLQMWSWQHIRRHRE
KVKRYRELYKHKITNKKPNEAMLKELEETEKTLDIFNITLARQQAEMEAMRAGLPVIRPG
QKAEVEESEGWISWMWNWGSETAPENEEVKTGGFDNLMTPEEKAKLYKAIGYSEIAVNHN
LPKDFEDMKVSFQLVSMSVSLKESSDKPEILKLAVMDLSAMLIQRSGAQALKVSAKLTSF
EVTGLPRDHVAPILLSSRRVAVDTENPLLTLMFETNPLDGSADQKLHADAQPLEIIYDAM
TVNNLSVFFLPPDDLQLDELTNATLMKLEQFKDRTATGLVYVIDTQKVLDLKVNLMASYV
IVPQGGFYSGQQNLILLDLGRLKMCSKTREGLPQLSVGSSTLEEIRSRAYDTFDIQLSNL
QLLYSKADGDWRAARKLKRSPLHVLEPVDLKVELSRAMVVTDSSMPKFKMSGELPLLSVR
ISDDKVRGVLALLESIPTPESRPTPSPKASIIHVTPKPSKNMTTPQLNPRKPTLAEMRSS
MFYDAISLTSMSSEEELFFDAPSSPVGDRPPFFSDDPPTAQSSAASLRKRTMATPEPQKN
MTDLLVSFMINKLSIQLCRVSEGEEVTVLHLSIEGLGAELKKCTFDIRAETFLREICLAC
PEYTDAEDKPVHLITTLDNTEDDLLMLEYTKADKNSPEFKTVYNNTEQLVKVNFTSLDVH
LYTEALLNTMNFLTSLLPHPPQEPAPAITEGGQGEGEEEEEDKEEEKKEGSAVVKAVSKS
SKAEDGEVVNMHIRADLSCLKVFIRGQKARIAEISIEGLVSEVLIKKKAMEIQANLKNII
ILDCDKEALYKKAVSIADKEVFAFRMVNYTDATQGEAYQDMRCVDTDISLTVGCIQLIFL
NKFFCSILTFVDNFQTAKAALAEVTAQAAEKAAVGVRELAERSSRISLEVHINAPVLFLP
QSSSSTNVIAADLGRIVVSNDFAVEAADSPLRTAIPPITDNMKVELSHLKMYRTTFADGK
FQTEVELLKPVNLNLSIKRNLSAAWYHSIPDIQIDAHLKPMSLVLSQEDMAVVLRTLSEN
LSETGDSTPSAAPPDKEDTTSNKENTVVTSAVVEVQQSAKLETRLKLDFKFDSLTLVLYS
PAESPQQDAREPQLMLAEFTLGSIHTQLLLMSDGGMNANVCLSECLLDDKRGHIKSVTSR
MLAMRPGAEKSVMLELSYRAGQEGSSLQVALQDLYLCASMEFLQTVANVFLEALASGKTT
AARSGRPSNTSASASASASASASASASASATTTTTKDTVPSQPSAVLRNTYSVLVKNPEV
VFVADLTRPDAPALVMTTQVEAEYHDGPDGQRLTAGIRDLKVTACPFLRQQRKPNHVTTV
LQPCQLFFSLHTPALEPQRMELSVSALTLKVSPIIINTVITIQSALTPAAESAEETESPV
PPDLWERRDLPQLKLWFLEEEGEEDARSLAPLVPQNDTLKVDIDAICLTLEAGVGHRTVP
MLLAKASFHGDAKNLSTLINLHSTLNLEVHYYNEVMGVWEPLLEPLEDETTDGFRPWSLE
LKMKKKAMKYSGLADEVDFSVPDYKTVISISSKDQLNIMLSKCGLSMLGNLGAAFAEAAT
QTAESFQRDQAPLVLKNRLGVGLSVLLSDMFVPLVPETHGDSVSLDRSKSTDRRVELPDG
QNLYMDYTSDQFSAMTNLNAKNYYIQPTPEGHSEACIIPLVKIGRSMYSVLHKDSHVTRF
FVCQIYSVEGSKYAKIRSPFQIINHCTVPFRVFEYNTCLGTSLPTEEFCVPLGSYRSQLN
LQPVTGEEGAAAHYGMSEGFSYDTVTKQPGECVEQTCRHLQDNECVFKVNMVAVRDAVTS
HSTEENFDPPYVLHLWPSVQLRNLLPYPVSYCLQGNAVSIPAVLEAGHSCQLHTALLDKD
SVELRLLDYLQRDWDAQYSLRSNQEEISFLTFRSLSDSEESELDVGVHVRYEAGQALLAL
HAPYWMVNKTGRLLQYKADDVHHKHPKDYNTPLIFSFKPRNFFQNNKVRLMISDSELSDE
FSIDTVGSYGDVKCKGRAKDYLVGVKIDATSFSLTRVVTFVPFYVLENHTKHLISVCEEG
QEQWTEAPPLQSAVPFWPERDSKKLRVNVQGCQTSQCIDFHKPENCLLLHLDNNLGGITV
DVNLTEHLAVVRFSDYHDGSAPFLLINHTRDHTIQYHQSSQKEVYELQAGQAVYYTWADP
TGSRVLNWSWGHHSGELKNEEDLLQDVGEQGSLFLLSFYEGLQRVALFTQDKRLFQCICN
SEKAELADQEYFLALQDLGVSLVNNTTSQEVAFIGICSSDVVWECKLQKKNRWKTLSMKD
ADLLEQSYKEYMETNPVDHSILTLPNNFQVSLTPTGTDMRMMKPHDALLRRNFLPALKVE
YKVSARQQAYRVQINHIQIQNQLPGAIFPVVYYPVKPPKSVSMDSEPKPLTDVSIITRTA
GHSDILRIKYFKVLIQEMDLRLDLGFLYALLDLFTQEHTEAVTTEQEVELFKKDIEYIKT
QLQNVSSTDTSPISLYEYFHISPIKLHLSFSLSTGGEDSQKEKRQTELIPVQSLNLLLKS
IGATLTDVQDVVFKLAFFEMRYKFNTRGQLQWEVIRHYSKQAIKQMYVLVLGLDVLGNPF
GLIRGLSEGVEAFFYEPYQGAIQGPEEFVEGMALGVKALAGAAVGGLAGAASRITGAMAK
GVAAMTLDEEYQQKRREAMNRQPRGLKEGLARGGKGLVSGFVSGITGIVTKPIKGAQEEG
ATGFFKGVGKGLVGAVTRPTGGIIDMASSTFQGIKRAAEASQDVESLRPPRFIHDDGVIR
PYREREGLGSQMLQKIENGRFARYRYFAHAKVNDSDFLMITKRGIFFVTKGTFGQLTCEW
QYLFDEFTKEPMIVEDRRLRIEAKERVKSVFHAKEFGKIINFRSADMAKWVLTKLEDARE
SLPKYY
NT seq
9741 nt
NT seq
+upstream
nt +downstream
nt
atggtatttgagtctctggtggtggacgtcctcaacaggtttcttggcgactatgtggtc
aacctggactgttcgcaactcagcctcgggatatggggaggtgatgctatcctgaaaaac
ttagaaataaaggaaaatgccctcagtcagttggacattccttttaaggtgcgggcagga
cacatagggcgcctggagctgaagattccatggaagaatctgtacacccagtctgtggag
gccaccctagatggagtctacctgctcatcgttcccaccgccagtattaagtacgatgct
gagaaagaggagcggcagctacaggaagctcgtcagagggagctccaacgcattgaagag
accaaacaaagagcagctgaacaagagaacccacaacttgagaagcaggacacttttgtg
gagaaactagtcacacaggtgatcaagaacctacaggtgacgatttccaacatccacatc
cgttatgaggatgatataaccaacccctcctcccccatctcatttggagtatctctacag
aacctcagtctgcagaccgcagatgcaaactggaccccgtgtctgctggatgataaggcc
aaactgttcttcaagctggtgcggttagacaacctgtttgcctattggaacaccaactct
gagctctactccaatcatactccagatgaggcgctgagatgtctgaaacagaatgttgcc
gtggaggggtacatccctcaggattatcagtatgtattccgaccgatctcggctagagcc
aaactgtgtatgaacccgcggaccgatgtggatttatccgccccaaaagttgacctcatt
gtcagtcttccagatgtgtctgtggagctcagcaggccacagtatgtcagcatcctggag
ctgctgggctcagtggacatgatgtcacgcaatttgccctacaggaagtaccgtccagac
ctgcccctaaacaataacgccttcctatggtggcgctacgtcatcaccggaatcctagag
gtcaacgtgagacctcgtctccagatgtggtcatggcaacacatccgtcgccacagggaa
aaggtcaaacgctaccgagagctctacaaacacaagatcaccaacaagaagcccaatgag
gcgatgcttaaagagctggaggagacggagaagactttggacatcttcaatataacactg
gcccgccagcaggcagagatggaggcgatgcgagcggggctgcctgtgattcgtccaggc
cagaaggccgaggtggaagagtccgagggatggatcagctggatgtggaactggggctcg
gagaccgcgccagaaaacgaagaggtcaagaccggagggtttgacaatctaatgacacca
gaggagaaagccaaactctacaaggccattggttacagcgagatagctgtcaatcacaac
ctgcccaaagattttgaggacatgaaggtgagctttcagctggtcagcatgagtgtgagc
ctgaaggagagctcagacaagccagagatcctgaagttggccgtgatggacctgagtgcc
atgctgatccagagatcaggagctcaggccctcaaggtgtctgccaagctgacatcgttc
gaagtgactggacttccccgggaccatgtggctcctatcttgctgtcgtcacgacgtgtt
gccgtggatactgagaacccgctcctaacgttgatgttcgagacaaacccactggacgga
tcggctgaccagaaactgcatgctgacgcccagccactggagatcatatatgatgctatg
acggtgaacaacctgtcggtattcttcctgccccctgatgacctacagctggacgagctg
accaatgcaacactcatgaagctggagcagttcaaagaccgcaccgctacaggtctggtg
tacgtgatcgacactcagaaggtgctggacctgaaggtgaacctcatggcctcgtacgtc
atcgtgcctcaggggggcttctacagcggccagcagaacctcatactgctggacctggga
cgcctgaagatgtgtagtaagactcgggagggcctgcctcagctctctgtaggcagcagt
accctagaggagatcaggtccagagcctacgacaccttcgacatccagctcagcaacctg
cagctcctctacagcaaagcagacggggactggcgggctgctcgtaaactgaagcgctct
ccgctgcacgtgcttgagccggtggacctgaaggtggagctcagtagagccatggtggtg
accgactctagcatgcccaagtttaagatgtctggagagcttcctctcctctccgtgcgc
atctctgatgataaggtgaggggtgtgctggccctcctcgagagcattccgaccccagag
agccgccccacgccctcgcccaaagccagcatcatccacgtcacgcccaagccgtccaaa
aacatgaccacccctcagctcaaccctaggaagcccaccctcgctgagatgcggtcttca
atgttctacgatgccatctcgttaacctctatgagctcagaggaggagcttttctttgat
gctcccagctctccggtcggcgataggcccccattcttcagcgacgacccgcccaccgca
cagtccagcgctgcatcactaaggaaacgcaccatggcaaccccggaacctcagaagaac
atgaccgacctcctcgtgtccttcatgataaataagctgtccatccagctgtgccgtgtg
agtgagggcgaggaggtgacggtgcttcacctgagcatcgagggcttgggggcggagctg
aagaagtgcacctttgacatccgggccgagaccttcctcagggaaatctgtttggcttgt
cctgagtacacagatgctgaagacaaacctgtgcacctcataacaacgttagacaacacg
gaggatgacctgctcatgttggagtacacaaaggcagataaaaacagtccggagtttaag
actgtgtataacaacactgaacagcttgtaaaggtgaacttcacctctctggacgtgcac
ctgtacacggaggcgctgctcaacaccatgaacttcctgaccagcctgctgccccaccca
ccgcaggagccagcccccgccatcactgaaggggggcagggagagggggaggaggaggag
gaagacaaggaggaggagaagaaggaagggtccgctgtggtcaaagcagtgtccaagagc
agtaaggcagaggatggggaggtggtgaacatgcacatcagagcggatctctcctgcctg
aaggtcttcatccgtgggcagaaggctcgtatcgcagagatcagcatagaagggctggtg
tctgaggttctaattaagaagaaggctatggagattcaggccaacctgaagaacattatc
atcctcgactgcgacaaggaagccctctataagaaggccgtgtccatagcagataaggag
gtgtttgccttccggatggtgaactacaccgacgccacgcagggcgaggcctaccaggac
atgcgctgtgtggacacggacatcagcctcacggtgggatgcatccaactcatcttcctc
aacaagttcttctgctccatcctgacgtttgtggataacttccagacggcgaaggcggcg
ctggcggaggtgacggcgcaggcggcggagaaggcggcggtgggcgtgcgtgagctggcg
gagcggagctcgcggatctccctggaggtgcacatcaacgcgcccgtcctcttcctccct
cagtcctccagctcgaccaacgtcatcgccgccgacctcgggcgcatcgtggtcagcaac
gacttcgccgtggaggccgcggactcgcccctgcgcacggccatcccacccatcaccgac
aacatgaaggtcgagctcagtcacctgaagatgtacaggactacgtttgcggatggaaag
ttccagactgaggtggagctgttgaagccagtgaatctgaacctgtcaatcaagaggaac
ctctccgctgcctggtaccacagcatcccagacatccagattgatgctcacctcaaaccc
atgagcctggtgttgagtcaagaggacatggcagtggtgctgcggactctcagtgagaat
ctctccgaaacgggcgactcaaccccatcagctgcccctccagacaaggaagacactacc
tcaaataaagaaaacactgtggtgacctccgctgtggtggaggttcagcagagtgccaag
ctggagaccagactcaaactggacttcaagttcgactccctgacactggtgctgtacagc
cctgctgagtctccacagcaggatgcgcgtgagccacagctgatgctggctgagtttact
ctgggctccatccacacccagctgctgctgatgtcagacggaggcatgaacgccaacgtc
tgtctctcagagtgcctgctggacgacaagaggggccacatcaagagtgtcacctctagg
atgctggccatgcgtccgggcgctgagaagagtgtgatgctggagctgagctaccgcgcc
ggccaggagggctccagcctgcaggtggcgctgcaggacctgtacctgtgcgccagcatg
gagttcctgcagaccgtggccaacgtcttcctggaggccttagccagcggcaagaccaca
gcggcacgcagcggccgcccgtccaacaccagtgccagtgccagtgccagtgccagtgcc
agtgccagtgccagtgccagtgccagtgccaccaccaccaccaccaaagacaccgtcccc
tctcagccgtctgcagtgctccgcaacacctacagtgtcttggttaagaaccccgaggtc
gtgtttgtggccgacctcacccgtcccgatgccccggccctcgtcatgacgacgcaggtg
gaggcggagtaccacgacgggcccgacggccagcgtctgaccgccggcatccgcgacctg
aaggtcaccgcctgcccgtttctacggcaacagcgcaagcccaaccacgtgaccaccgtc
ctgcagccctgccagctgttcttcagcctccacacccccgccctcgagccccagcgcatg
gagctcagcgtcagcgcactcacgctcaaggtctctcccatcatcatcaacacggtgatc
accatccagtcggcgctgacgcccgcggccgagagcgcggaggagacggagagccccgtg
ccccctgacctgtgggagcggcgcgacctcccccagctcaagctctggttcctggaggag
gagggcgaggaggacgcccgctccctggcacccctggtgccccagaacgacacgctcaag
gtggacatcgatgccatctgcctgaccctggaggctggcgtggggcacaggacggtgccc
atgctgctcgccaaggcgtcgttccacggggacgccaagaacctgagcacactcatcaat
ctacacagtaccctcaacctggaggtgcattactacaatgaggttatgggtgtttgggag
ccgctgctggagcctctggaagatgaaaccacagatggattcagaccctggagccttgag
ctgaagatgaagaagaaggccatgaagtattctgggctggcggatgaagtggacttctct
gtgcccgactataaaacggtcatcagcatcagcagtaaagaccagctcaacatcatgctg
tccaaatgtggcctcagcatgctcggcaacctgggagcggcctttgctgaggcagccacc
cagacggctgagagcttccagcgggatcaggctccgctggtgctgaagaatcgcctgggt
gtgggcctgtccgtgttgctcagcgacatgtttgtccctctggtgcccgagacccacggc
gactccgtgtctctggaccgctccaagtccacggaccggcgcgtggagctgccggacgga
cagaacctctacatggactacacctcggaccagttctcagctatgaccaacctcaatgcc
aagaactactacatccagcccactccggagggccactcggaagcgtgcatcatcccgctc
gtcaagatcggccgaagcatgtacagcgtgctgcacaaagactcgcacgtcacgcgcttc
ttcgtctgtcagatctactccgtggagggcagcaagtacgccaagatccgctcgcccttc
cagatcataaaccactgcacggtgccgttccgtgtgtttgagtacaacacctgcctgggc
acctcccttcccaccgaggagttctgcgttccgctgggctcctacaggtcccagttaaac
ctccagcccgtgacgggtgaggagggagctgcggcacattatgggatgtctgaaggcttc
agctatgacaccgtcactaagcaaccgggcgagtgtgtggagcagacgtgtagacacctt
caggacaacgagtgtgtgttcaaggtgaacatggttgccgtgagagacgctgtgacctca
cacagcacagaggagaactttgaccccccctacgtgctgcacctgtggcccagcgtccag
ctgaggaatctgctgccttaccccgtctcatactgcctgcagggcaacgccgtctccatc
cccgccgtgctggaggcgggacattcctgccagctgcacaccgccctattggacaaggac
tcggtggagctccgcctcctggactacctgcagcgggactgggacgcccagtacagtctc
cgtagcaaccaggaggagatcagcttcctgacgttccgctcgctgagcgacagcgaggag
tcggagctggacgtgggcgtgcacgtgcgctacgaggcggggcaggccctgctggcgctg
cacgccccctactggatggtcaataaaacgggccgcctgctgcagtacaaggccgacgac
gtgcaccacaaacaccccaaggactacaacacccccctcatcttctcgttcaaacccagg
aacttctttcagaacaacaaggtgcgcttgatgatttcagacagtgagctctcggacgag
ttctccattgacacagttggtagctatggtgatgtgaaatgcaaaggccgggcgaaagat
tacctggttggagtgaagattgatgccaccagcttcagtctgacccgcgtggtgacgttt
gtgcccttctacgtgctggagaaccacactaaacacctgatcagtgtgtgtgaggagggc
caggagcagtggaccgaggcaccgccactgcagtctgctgtacccttctggcctgagaga
gactctaagaagcttagggtcaacgttcaaggctgccaaacatctcagtgcatcgacttc
cacaagccagagaactgcctcctacttcaccttgacaacaatttgggaggcatcaccgtg
gatgtgaatctgactgaacacttggccgttgtgcgtttctctgactaccacgatggctcc
gcccccttcctgctcatcaaccacaccagagatcacacaatccagtaccaccagagctct
cagaaggaggtttacgagttgcaagcggggcaggccgtgtactacacctgggccgaccca
accgggtcacgcgtgttgaactggagctggggtcaccactcgggagagctgaagaacgag
gaggacctgctgcaggacgtgggagagcagggctctctcttcttgctgtcgttttatgag
ggcctccagcgggtggcgctgttcacccaggacaagcggctcttccagtgcatctgcaac
agcgagaaggccgagctggccgaccaggagtacttcctcgccctgcaggacctgggcgtg
tccctcgtcaacaacaccaccagccaggaggtggccttcatcggcatctgcagctctgac
gtggtgtgggagtgtaagctccagaagaagaaccggtggaagaccctgagtatgaaggac
gcagaccttctggagcagagctataaagaatacatggagaccaacccagtggaccactcc
atcctcacactgccaaacaacttccaggtgtctctgactcctactggaaccgacatgcgg
atgatgaagccccatgatgctttgctgcggaggaactttctgccggctctaaaagtggag
tacaaagtgtcggcacggcaacaggcctatcgtgttcagatcaaccacatccagatccag
aaccagctgccgggtgccatcttccctgttgtctactaccctgtgaagccacccaagtct
gttagcatggactcagagcccaaacccttgactgatgtcagcatcatcacccgaactgca
ggacactctgacatcttgcgcatcaagtacttcaaggttctgatccaggagatggatctg
aggctggacctgggctttctctacgccctgctcgacctcttcacacaagaacacacagaa
gccgtcacgactgagcaggaggtggagctctttaagaaagacatcgagtacataaagacc
cagctgcaaaacgtctccagcacagacacctcccccatcagcctctacgagtacttccat
atatcccccattaagcttcacctgagtttctctctgagtactggtggagaggatagccaa
aaggagaagaggcagacagagctgatcccagtccagagtctcaacctgctgctcaagagc
atcggagcgacgctcacagatgtacaggatgtggtgttcaagctggccttctttgagatg
aggtacaaattcaacacaagagggcagctccagtgggaagtcatcagacactactctaaa
caggctattaagcagatgtatgtgctggtgctggggctggatgtcctggggaatccgttt
ggtctgatccgtggcctgtctgagggagtggaggctttcttttacgaaccgtatcagggt
gctatccagggtcctgaagagtttgtggagggcatggcgctaggagtcaaagccctggct
ggtgcagcagtaggtggtctggcgggcgctgcgtctcgtatcacgggggccatggcgaag
ggtgtggcggccatgacactggatgaggagtaccagcagaagagacgcgaggccatgaac
cgccagcccaggggcctcaaagaggggctcgcccgcggaggcaagggcctagtgtctggc
tttgtgagcggtatcactgggatagtgactaaacccattaaaggagcacaggaggaggga
gccaccggtttctttaagggagttgggaaagggctggtgggagcagtgactcggcctacg
ggaggcatcatagacatggccagcagcaccttccagggcatcaagagggctgcagaggca
tctcaggatgttgagagtttgcgtcctccgcgtttcatccatgacgacggtgtgatccgc
ccctacagggagagggaggggctcggtagccagatgctacagaagattgagaacgggcgc
tttgccaggtacaggtactttgctcacgccaaagtcaacgactcggacttcctgatgatc
accaaaaggggcattttctttgtcacaaagggaacatttggtcagttgacgtgcgagtgg
caatatctgtttgatgagttcaccaaggaaccaatgattgtagaggaccgacgtctgagg
attgaggccaaggagagagtcaagtctgtgtttcatgccaaagaatttggcaagatcatc
aacttcagatctgctgacatggccaagtgggtactcaccaagctggaagatgcaagagag
agtctgccaaaatactactga
DBGET
integrated database retrieval system
