Clupea harengus (Atlantic herring): 105894553
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Entry
105894553 CDS
T09045
Symbol
obsl1a
Name
(RefSeq) obscurin-like protein 1a
KO
K19574
obscurin-like protein 1
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
char03036
]
105894553 (obsl1a)
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Centrosome formation proteins
3M complex
105894553 (obsl1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
V-set
Ig_6
Ig_4
Izumo-Ig
C2-set_2
VEGFR-1-like_Ig-like
Tissue_fac
fn3
Motif
Other DBs
NCBI-GeneID:
105894553
NCBI-ProteinID:
XP_031414919
UniProt:
A0A6P8ES96
LinkDB
All DBs
Position
21:4650555..4676735
Genome browser
AA seq
2295 aa
AA seq
DB search
MDVFGGAPRVLGYPRPVAVRDGMDAQLKCQIGGDPQPDVVWERKNVPLLSEGRYSISQEG
KAYFLCISCVTAEDSGQYICKAKNSIGETCAAAMLKVENESQEVLVVPPPQPQSQLQQQP
LQNGNIEPEQQLQRDPKAEQQQQKELDFENRDRPRFLIKPLSLRVDRGEDAAFSCKLTGE
PLPEVIWEKDGKRLKEIFESSHFRVCEQDGGWYQLKVFRTRAPDGGVYTCRAANEHGQTV
AGAVLLVEPVPETREEKMQNGYANGYANGLSTPTPGSPSSSHSKDRHHMAKHSKEPLLNV
AKAKKFAVSEGKHAKFRCYVTGKPKPEIVWKKDGVPLDIGRRHMIFEDREGYFTLKVLYC
KQQDSGLYVCAASNALGNTLSAVQLSVKGPPVRFKRGLRDVEVRERDVAVLECEVPEDSV
PISWYLEDQRLHPNSKYDMEQRGTRRRLTIHDIGVDDDGVYLCEMADGGKSIAELSVKGT
IVRKLPRKLEVLEGENAAFCVEVDQEDMEVYWYKDGTHLRETHQTIIKSFGRTHILVFVN
TSYQDSGTITFVAGRSKNSSRLKVKAARHSAPPCPVGVNMNAHTANGAVLSWEPAPNLQK
GTKTVYVLERQEVGSQEWRKCLSTEATTSVEVLGESVPCEGDYRFRVCCVNKYGRSGHVE
FPKVIRLVPGPKIKTPLTNVVVTGGDDAVFSIELSATMIGTWFLNSTQLQDSENFTLRQN
QQKHSLHIRSVRDIYNGAEITFIASGVRDSAILQVEPREVKFDPLTVLETDKKVEMGDPI
VLYCEVSHPSAKVRWFKDGVELQMEDGLNIQSEGNMRRIVIQSSEYSHSGEYTCKALGDT
LTFNVEVEAGRAMFAAVPEKERNKFVEGGDSITLQCGVSDPSAEVHWFKDGEPVVVQDGV
EIQAQGNQRTLVIQSADFHHAGMYTCQSSDDVSVFQVDITGPPVTIKEIPEEDCVKTAME
LDPVVLYCEVTRPDAAARWTKDGVEVQASDIVTVQAEGVMRRLIIRSADLQDAGTYTCHA
GDSSMSFTVNIKEPPVMIVDPKDDIHLDRYLSEEIVLNCELSRSSGVARWFKDGLEVRES
ENVRVSSEGPYRRLTILCGLKEDSGEYVCDTGGDSVFFQLSVTAAPVRFVSPRESEVEMV
WQAGERVELSCELSCAKAEVCWFRDGLEVDEADGLVLEVDGAHRRLVIPCSCPEDTGEYL
CESADDSVTFLLTVEEPPVQLTRPKQAKSVVDQVSGEPLVLECEVSRENAEVRWLKDGVE
LELDGDVTVTEEGLIRRLTILSPSGKDSGKYTCDAGGDAIDFKVNVKQAPVKILRKEEIE
TEHNCVVSDDVELECELSRASGKACWYKDGERLEENERFCVEEEGAFRSLIILNVDLEDS
GEYFLDVLDDNITFMVKVQEPPVTIVGNSDDPEYQEMVSGDDLILAIEVSRANAPVEWYC
NEKRLVEDSRTHIETYGTLRKLIITDIKSSDSGKYMCDAVNDKMATVVRVKEPPITILNK
EEVNKVTGYEGEGVTLNVVLSREKPVVKWMKDWTEVNNERYRIGYNGVTHYLTIDPLRRS
DSGEYTCDVGTDEMQFSLLVKEMRVKFTKSLHNTVAYKDGMITLRCEVCKAKADVLWLKD
GEEVIPSRRFSIRANELERSLTIHRVTKEDAGEYSCESRDDCTRAYIRVELPREVEFVTE
LHNTTVLEGDDATFKCVVSPEDAEVVWLMDNEPITSGDRFVVSQNGLCHTLVIRRCQILD
SARITAESEGVTSKASLKIQEAQILFTKRAEPVEGEEFGESTLETEISLETGEVQWMRQS
VVIQTGVHYTLSQSGRKRRLTVHNLGLSDRGTYRCETLHDRTQVKLNVEPRKVFLRKSLK
DMETFERETASFEVELSHADVEGVWQKDGLRIKPNNNWRVSMNGCVHGLTMSNLSLEDTG
TIVFSSDGLRTSARLQVKEPPVTILRKLTDLSFEEGSPVTLECELSRPNVDAKWFRNDME
LKVDKNHRIYSMGRKRFLQILESSIGDSGSYKCEIGELSTFCNLNIFEHALEIIQGIEDL
HIQEDQNAVFMCELSLEDVPGDWYKDEHKLKPTSTIKIRREGTKHFLLICNVTAEDTGEI
KFVARQLESIACLEVEDRPASIVKPLRDRTALQKHRVILECTVSTPRCVATWYCGQTELE
TSDRMEITSDGCCRRLVIHQVALEDEGTYSVEVGEHTSTAKLLVEGQSILLVRELEDVEV
TAPDQACFECELSMPLLKTPVWTLDGETLQNSSEVRLETQGAVHKLTFKKTSEDMSGEVR
FTVGKAKSCAQLTVN
NT seq
6888 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgtttggcggagccccccgtgtgctcggctacccccgccctgtggcggtccgt
gacggcatggatgcccaactcaagtgccagatcggaggagacccccagcccgacgtcgtg
tgggagcggaagaatgtgcccctcctctctgagggccgctacagcatctcccaggaggga
aaggcctacttcctgtgcatttcctgtgtgaccgccgaagacagcgggcagtacatatgc
aaggccaagaacagtatcggggagacttgtgcagctgccatgctaaaggtggagaacgag
tcgcaggaggtgctggttgtgccaccacctcaaccacagtcacagttacagcaacaacca
ttgcagaacgggaacatagagcctgagcagcaactacaacgggacccgaaggcggaacaa
caacaacaaaaggagttggattttgagaaccgcgaccggcctcgctttctcatcaagccg
ctctcgctgcgtgtggaccggggcgaggacgccgccttctcctgcaagctgacgggggag
ccgttgcccgaggtgatctgggagaaggacggcaagcggctgaaggagatcttcgagagc
tcacacttccgggtgtgcgagcaggacggcggctggtaccagctgaaggtgttccgcaca
cgggcacccgacggaggcgtctacacctgccgggcggccaatgagcatggccagacggtg
gccggcgctgtgcttctggtggagcccgtgcctgagactcgggaggagaaaatgcaaaac
ggctacgctaacggctatgctaacggcctttctacgccaacaccggggtctccctcgtcg
tcccactccaaagaccggcaccacatggccaagcacagcaaggagccgctgctgaacgtg
gccaaggccaagaagtttgccgtgtccgaggggaagcatgccaagttccgctgctatgtg
acagggaagccaaagcctgagatagtgtggaagaaagacggggtgcccctggacatcggc
agacgtcacatgatatttgaggaccgggagggctacttcacactaaaggtgctctactgc
aagcagcaggattctggcctgtacgtatgtgcagcatccaatgcactcggcaacacccta
agcgccgtacaactgtctgtgaaagggccgccggttcggttcaagcggggacttagggat
gtggaggtacgggagcgggacgtggccgtgctggagtgcgaggtccccgaggactccgtc
cccatctcctggtacctggaggaccagcgtctgcaccccaacagcaagtacgacatggag
cagaggggtaccaggaggaggctcaccattcatgacatcggggtggacgatgatggagtg
tatctctgtgaaatggcagacggggggaagagtatcgcagaactctcggttaaaggcacc
atcgtccgcaaactccccaggaagctggaggttctggaaggggagaatgctgccttctgt
gtagaggtggaccaggaggacatggaggtttactggtacaaagatgggacccatttacga
gagactcaccagacgatcatcaaatcgtttggcaggacacatatcctggtcttcgtcaac
acctcgtaccaggattcagggactatcacatttgtagcagggagatccaagaattcctca
cggctcaaggtcaaagctgcccgacacagtgcccccccgtgcccggtcggggtgaatatg
aacgcccacacagccaacggcgccgtgctgtcctgggagccagctcccaacctgcagaag
ggcactaagacggtgtacgtgctggagaggcaggaggtgggctcgcaggagtggcgcaag
tgccttagcacggaagcgaccacatcggtggaagtgctgggcgaaagcgtgccctgcgag
ggcgactaccgtttccgcgtctgctgtgtcaacaagtacggccgcagtggacacgtggag
ttccccaaggtgatccgactcgtgcctggcccaaagataaagacccctctgacgaatgtg
gtggtcaccggtggcgacgatgccgtgttctccatcgagctgtccgccaccatgattggc
acctggttcttgaacagcacccagctgcaggacagcgagaacttcactctccgccagaac
cagcagaagcattccctgcacatccgcagtgtcagagacatttacaacggggcggagatc
accttcatcgccagtggggtccgagattccgctattctacaagttgaaccacgtgaagtg
aagttcgaccctctcactgtgctggagacagataagaaggtggagatgggagaccccata
gtcctctactgcgaggtgtcacacccgtctgcgaaggtccggtggttcaaggatggggtg
gagcttcagatggaggatggcttgaacatccaatcagagggaaatatgaggaggattgtc
attcagtcgtcagaatactcccactcaggagagtacacctgcaaggccctgggcgatact
cttacatttaacgtggaggttgaagctggccgagcgatgtttgcagccgtcccagagaag
gagaggaacaaattcgtagaggggggcgactccatcaccctccagtgtggcgtctcagac
cccagcgctgaggtccactggtttaaagatggagagccagttgtggtgcaggacggtgtg
gagatccaggcacaaggcaaccagaggaccctggtcattcagtctgccgatttccaccac
gccgggatgtacacttgtcaatcaagtgatgatgtcagtgtgtttcaggtcgacattaca
ggcccccctgtcaccattaaagagatcccagaggaggactgcgtgaagacggccatggag
ctggaccccgtggtcctgtactgcgaggtgacccgaccggacgccgcagctcgctggaca
aaggacggagtggaggtgcaggcgagtgatatcgtcacggtccaggccgagggcgtcatg
aggaggctgatcatcaggtcggcggacctccaggatgctgggacatacacctgccatgcc
ggagacagcagcatgtcctttaccgtcaacattaaagagcctccagtgatgatcgtggac
cctaaggatgacatccacctggacaggtacctctctgaggagattgtgctcaactgtgag
ctgtctcgctccagcggagtggcccggtggttcaaggacggcctggaggtccgggagagc
gagaacgtgcgggtcagctccgagggcccctacaggaggctcaccattctctgcggtctc
aaagaggactctggagagtatgtgtgcgacacaggcggagactctgtcttcttccagctc
agtgtcacagctgctccggtgcgcttcgtctctccccgggagtcggaggtggagatggtg
tggcaggcaggggagcgggtggagctgagctgtgagctgagctgcgctaaggcggaggtg
tgctggttccgtgacggcctggaggtggacgaggcagacgggctggtcctggaggtggac
ggggctcacaggaggctggtcataccctgctcctgtccggaggacacgggggagtatctc
tgcgagagtgcagatgactcagtgaccttcctgctgacggttgaagaacctcctgtccag
ctgactaggcccaagcaggcgaagagtgtggtggatcaggtctctggggagcccctggtg
ctggagtgcgaggtgtcccgtgagaacgctgaggtgcgctggctaaaggacggggtggag
ctggagctggacggcgatgtcaccgtgaccgaagaaggcctcatccgcaggctaaccatc
ctctcgccctcaggaaaggactcagggaaatacacctgtgacgccgggggggatgccatt
gatttcaaagtcaacgtcaaacaggccccggtgaagatcctgcggaaagaggagattgag
acggagcacaactgcgtggtctctgatgacgttgagctggagtgcgagctctcaagggcc
agtggcaaagcctgctggtacaaagatggagagaggctagaggagaacgagcgattctgt
gtggaggaggaaggcgctttccgctcgcttatcatcctcaacgtagacctggaagattca
ggagagtatttcctcgacgtcctggatgacaacatcacattcatggttaaggtgcaagag
cctccagtgaccatcgtgggaaactcggatgacccggaataccaggaaatggtatcagga
gatgacctcatcctcgccatcgaggtgtcacgagccaacgccccagtggagtggtactgt
aacgagaagcgactggtcgaggactcgcgaactcacatcgagacttacggcaccctgagg
aaactcatcatcactgacatcaaatcctcagactcagggaaatacatgtgcgatgccgtc
aatgataagatggcgactgttgtcagagtgaaagaacctcctatcaccatcctgaacaag
gaggaagtgaacaaagtgacaggatatgagggtgagggtgtgactctgaacgtggtgctc
tcacgagagaagcctgtggtcaagtggatgaaggactggacggaggtcaacaacgagcgc
taccgtatcggctacaacggcgtaacacactacctgaccatcgacccgctcaggaggtcc
gacagcggagagtacacgtgtgatgtcggcacggatgagatgcagttcagcctgctggtg
aaagagatgcgagtgaagtttacaaagtccctgcacaacaccgtggcttacaaggatggc
atgatcaccctgcgctgtgaagtgtgcaaggccaaggcggacgtcctgtggttgaaggac
ggcgaggaggtcatccccagccgccgcttctccatccgggccaacgagctggagcgcagc
ctcaccatccaccgcgtcaccaaggaggacgccggcgagtacagctgcgagtccagagac
gactgcacccgtgcctacatcagagtggagctgccccgtgaggtggagtttgtgacggag
ctgcacaacaccacggttctggagggtgatgacgccaccttcaagtgcgtggtgtcaccc
gaggacgccgaggtggtgtggctgatggacaacgagcccatcacgtcgggtgaccgcttc
gtcgtctcgcagaacggcctctgccacacactcgtcatccgccgctgccagatactggac
tcagccaggatcaccgccgagtccgagggggtcacttccaaagccagcctcaagattcaa
gaggcccagattctgttcaccaagcgggcggagccagtggagggtgaggagtttggggag
tccaccctggagacggagatcagcctggagactggggaggtgcagtggatgaggcagagc
gtggtcatccagaccggggtccactatacgctgtcccagagcggacgcaagcgcagactc
accgtacacaacctgggcctgtccgaccgggggacgtaccgctgcgagaccctgcatgat
cggacacaggttaaactcaacgtggagccgaggaaagtcttccttcgtaagagcctgaag
gacatggagacatttgagcgcgagacggcgtccttcgaggtcgagctgtcccacgcagac
gtcgagggtgtgtggcagaaggacggtcttcgcatcaagcccaacaacaattggagggtg
agcatgaatgggtgtgtccacggcctcaccatgtccaacctcagtctggaagacaccggc
accatcgtcttctcatcagacggcttgaggacttcggcccgactgcaggtgaaagaaccc
ccggtgaccatcctgaggaagctcacggatctcagctttgaggagggatcacctgtgacg
ttggagtgtgagctgtccagaccaaacgttgacgcgaaatggttcaggaacgacatggag
ctgaaggtagataagaaccacagaatctactccatggggaggaaacgcttcctgcagatc
ctggagtccagcattggcgactcgggcagctacaagtgtgaaatcggggagctcagcacc
ttctgtaatctcaacatttttgagcatgcgttggagatcatccagggtatagaggacctg
cacatccaggaggaccagaatgccgtgttcatgtgtgagttgtccctggaggacgtccct
ggagactggtacaaagacgagcacaaactaaagcccaccagcaccatcaaaatccgacgg
gaaggaacgaaacacttcctcctgatttgcaacgtgacagctgaggacaccggagagatc
aaatttgttgcaaggcagctggaatccatcgcctgtctggaagtggaggaccgccctgcc
tccatagtgaagccactgcgtgatcggacggccctgcagaagcaccgcgtcatcctggag
tgcaccgtgtccacaccgcgctgtgttgccacgtggtattgcggccagactgagctggag
acttcagaccgcatggagatcaccagcgacggctgctgccgtaggctagtcatccaccag
gtggcgctagaggacgagggaacatacagtgtggaggtcggggagcacacttcaactgct
aagctgctggtggaaggtcaatctatcctgctggtcagggaactggaggacgtggaggtg
actgctccagatcaggcttgttttgagtgtgagctctcaatgcccctgctgaagacccca
gtgtggacactggatggggagactctccagaacagctccgaggtccgactggagacccag
ggcgctgtccataagctcacctttaagaagacctccgaggacatgagtggggaggtgcgc
ttcactgtcggaaaagccaagtcctgcgcacagctcacagtcaactag
DBGET
integrated database retrieval system
