Clupea harengus (Atlantic herring): 105894562
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Entry
105894562 CDS
T09045
Symbol
trim25l
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM47
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
105894562 (trim25l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
105894562 (trim25l)
Enzymes [BR:
char01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105894562 (trim25l)
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
105894562 (trim25l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_4
zf-RING_UBOX
RING_XB3-XBAT31
zf-B_box
zf-C3HC4
zf-C3HC4_3
zf-C3HC4_2
zf-RING_2
ANCHR-like_BBOX
zf-RING_5
SSV1_D-63
Tmp39
SesA
TBCC_N
MutS_III
zf-RING_6
FlaX
HAUS-augmin3
Motif
Other DBs
NCBI-GeneID:
105894562
NCBI-ProteinID:
XP_042558804
UniProt:
A0A8M1KA00
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All DBs
Position
21:complement(26205119..26212649)
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AA seq
429 aa
AA seq
DB search
MSKLWTEEQFNCPVCLDLPSDPVTIPCGHSYCMACIADFWSTEKTKKKSPGVYSCPECRQ
TFSPQPPLNRNTMLSEAMEQLRKGNKLSSGARETIRRAQGASVRANDTAKPGANGRLSSA
AAVAVPCDQCPDGGREAAKTCLVCMASFCEAHLKPHRTNAKLKGHELIAPTGNLAEKMCP
QHKYLQEFYCKPCQMYVCWLCTSNQHKGHESVSTQAQRTEKQKEVEVAQTQNQQRLQERQ
KELKDMKKVLESVTRSSEKAQAEVETVLSELQRSVQRLQDLVGEVMLSTGQEKLSEAQDV
VQKLQAEVRLMKRRETDMRDLIRCQDNIYFLQNCEALVCPVEEGDLGSVCVNPDASFDPV
RCTVLELRQRVEEMCNLELNNINRTGVDTHTHVTAHDEPRMPGTVTNQELGPHPDLDRDN
RDKQMKMTA
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgagtaagctttggacggaggagcagttcaactgccccgtgtgtctggacctgccctcc
gacccggtgaccatcccgtgcggccacagctactgcatggcgtgcatcgccgacttctgg
agcacggagaagacgaagaagaagtcgccgggcgtctacagctgccccgagtgccggcag
accttcagcccccagccgccgctcaaccgcaacaccatgctgtccgaggccatggagcag
ctgcgcaagggcaacaagctgagcagcggcgcgcgcgagaccatccgcagagcacagggc
gctagcgtgcgagctaacgacaccgctaaacccggagctaacgggcggctgtcgtcggcg
gcggcggtggcggtgccctgtgaccagtgcccggacgggggccgcgaggcggcgaagacc
tgcctggtgtgcatggcgtccttctgcgaggcgcacctgaagccgcacaggaccaacgcc
aagctgaagggccacgagctcatcgcgcccacgggcaacctcgcggagaagatgtgcccg
cagcacaagtacctgcaggagttctactgcaagccctgccagatgtacgtctgctggctc
tgcaccagcaaccagcacaagggacacgagagtgtgtccacgcaggcccagcgcacggag
aaacagaaagaggtagaggtggcccaaacacagaaccagcagaggctccaggagagacag
aaggagctgaaagacatgaagaaagttctggaatcagtcacgcgctcctctgagaaggcc
caggcggaggtggagacggtgctgagcgagctccagcggtcggtgcagcgtctgcaggac
ctggtgggggaggtgatgctctccactgggcaggagaagctaagcgaggcccaggacgtg
gtgcagaagctgcaggccgaagtcaggctgatgaagaggagggagacggacatgagggac
ctgatccgttgccaggacaacatctacttcctacagaactgtgaggctctggtgtgtccg
gtggaggagggggacttggggagtgtgtgtgtcaaccccgacgcctccttcgacccggtc
cgctgcaccgtcctggagctccgtcagcgggtggaggagatgtgcaacctggagctcaac
aacatcaacaggacaggtgtggacacacacacacacgtaacagctcacgacgaacctcgg
atgccaggaaccgtgacgaaccaagagctgggacctcacccagacctcgacagagacaac
agagacaagcaaatgaagatgacagcttga
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