Clupea harengus (Atlantic herring): 105894574
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Entry
105894574 CDS
T09045
Symbol
gapvd1
Name
(RefSeq) GTPase-activating protein and VPS9 domain-containing protein 1 isoform X6
KO
K27566
GTPase-activating protein and VPS9 domain-containing protein 1
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105894574 (gapvd1)
Membrane trafficking [BR:
char04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
105894574 (gapvd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RasGAP
VPS9
DUF5601
DUF5740
Motif
Other DBs
NCBI-GeneID:
105894574
NCBI-ProteinID:
XP_031426749
Ensembl:
ENSCHAG00000006232
UniProt:
A0A6P8FKX2
LinkDB
All DBs
Position
7:23370336..23415860
Genome browser
AA seq
1450 aa
AA seq
DB search
MMVKPDILTLAHHLKQERLYVASEKQLIQRLNHDVLKTAEKLYRAAWIAKQQRINLDRLI
LTSAEASPAECCQHARVLEDTQFVDGYKTLGFQESIYGEFLWRLRENPRLVASCLVAGER
LNQEHTQSVIHSVFTSLYGNGIMQEDESYLLQVLRYLIEFELKESDNPRRLLRRGTCAFS
ILFRLFSEGLYSAKLFLTATLHEPIMQLLVEDEDHLETDPAKLTERHTPAQQERLFGEKG
SDAHRRRVQSAVEANEAKLVTLVNSFIGCLRQNTYCFPQSLRWVLSQMFRTLSRVEGLQV
GEVRSMCTDLLLACFICPAVVSPEQYGIISDAPINEVARFNLMQVGQLLQQLAMVDADDG
DPRRKSTLSKFDKSCVSAFLDVVIGGRAVETPPMSTMNLLEGLSRTVVYITHNQLLNLVD
FVRNVTASDQLREEDHLALETLVSNVPQSRTVKSNSLELTPSNTPQLSPATTPANKKNRL
PIGSRSRSRTNIAQEGEPEASSQESLQEVNPEEVLVISLGTTPQTIPGMMSENEVLSLQM
SDSAAGDAPADEVKLHGKPDKTLRFSLCSDNLEGISEGPSNRSNSVSSLDLEGESVSELG
AGPSGSNGVEALQLLEHEHATTQDNLDDKLRKFEIRDMMGLTDDRDISETVSETWSTDVL
GSDFDPNMDEDRLQDIAGAAVENMLGSLLCLPGSGSVLLDPYGSTISETTSEAWSVEVLP
SDSEAADLKQEERMQELESCSGVGSTSDDTEVREVSSRPSTPGLSVVSATSEDIPNKIED
LRSECSSDFGGKDSVTSPDGEESAHGAHSLACGSSQNESLLAMFDPLSSGEGSTGTIVRP
KVHYMRPAHPPPDPPIPEASAMGPPEPRGGPLFAPHGLIQELEHGKQRHSYPERLVRSRS
SDIVCGGRRPTSEPCLNRRTIAEDREPEPPANAFASGAASSPSRDSLKGEVEDRKDSDDE
KSDRNRPWWKKRFVPAIPKAPIAAFRKRDKPEKDELGPERHPHDDSSPRLSSQAQAAEDI
LDKYRNIKRTSPSDGATATSYDQHGPEPTGEGESGHDSPRDEALQNMSTDDLPDSASQTA
QPQDKFSFSDAKKKLRLALCVADSVVFPLMLPVSTRNGLPDHTDPEENEIVCFLKVQLAE
AINLQDKAQMAQLQETMRCVSRLDARTCRKLLAAIADDYRKRAPYIAYLTRCRQGLQTSQ
AHLERLLQRVLRDKEVANRYFTTVCVRLLLEHMEAKMLDFISAFVACTASDDKTAAVEDF
LRYLYGAMAHDAIWQYASEDQLQDAQMAIERSVMNRIFKLAFYPNQDGDILRDQLLQEHI
QRLTKVVTANHKALQVPEVYLREAPWPSAQAEIRTINAYKTPRDKVQCILRMCSTIMNLL
SLASDDSVPGADDFVPVLVFVLIRANPPCLLSTIQYINNFYSSRLSGEECYWWMQFTAAV
EFIKTIDDRK
NT seq
4353 nt
NT seq
+upstream
nt +downstream
nt
atgatggtgaagccggacatcctcacgcttgcgcaccacctgaagcaggagcgtctgtac
gtggcctccgagaagcagctgatccagcggctcaaccacgacgtgctcaagaccgccgag
aagctctaccgcgccgcctggatcgccaagcagcagaggatcaacctcgaccgcctcatc
ctcaccagtgctgaagcgtcccctgccgagtgctgccagcatgcgcgcgtcctggaggac
acgcagttcgtggacggctacaagaccctgggcttccaggagagcatctacggcgagttc
ctgtggcgcctgcgggagaacccgcgcctggtggcgtcctgcctcgtggccggggagcgg
ctcaaccaggagcacacgcagagcgtcatacactccgtcttcacctcgctctatggcaac
ggcatcatgcaggaggacgagagctacctgctgcaggtcctgcgctacctgatcgagttc
gagctgaaggagagcgacaacccccggcgtctgctgcggcgcggcacctgcgccttcagc
atcctcttccgcctcttctccgagggcctgtactccgccaagctcttcctcacggccacg
ctgcacgagcccatcatgcagctgctggtggaggacgaggaccacctggagacggacccg
gccaagctcaccgagcgccacacgcccgcgcagcaggagcgcctgttcggagagaagggc
tcggacgcccaccgccgcagggtgcagtccgccgtggaggccaacgaggccaagctggtg
acgctggtcaacagcttcattgggtgcctgcgccagaacacctactgcttcccccagagc
ctgcgctgggtcctgtcccagatgttccgcacgctgtcgcgggtggaggggctgcaggtg
ggcgaggtgcgctccatgtgcacggacctgctgctggcctgcttcatctgccccgccgtg
gtcagccccgagcagtatggcatcatcagcgacgcgcccatcaacgaggtcgcacgcttc
aacctcatgcaggtagggcagctcctccagcagctggccatggtggatgcagatgatgga
gacccccgcaggaaaagcactctgtccaagtttgacaaaagctgtgtgtctgccttcctg
gacgtggtgattggagggagagccgtggagactccgcccatgtccactatgaacctgctg
gaaggcctaagccggactgtggtctacattactcacaaccagctgctgaatctggtggac
tttgtgcggaatgtgacggccagcgatcagctccgtgaggaagaccacctggccctggag
acactggtgtccaacgtcccgcagtcccgtacggtgaagagcaacagcctggagctcacg
ccctccaacacgccccagctctcgcccgccaccacgcccgccaacaagaagaaccgcctg
cccataggctcccgcagccgcagccgtaccaacatcgcccaggagggggagccagaggcc
agctcccaggagtccctgcaggaagtcaatccagaggaagtgctcgtcatctcgctaggc
accaccccgcagaccatccctggcatgatgtcagagaatgaggtcctgtccctgcagatg
tctgacagtgcagcaggggatgctccagcagacgaagtgaagctccacggcaaacctgat
aaaaccctccgcttctctctctgcagcgacaacctggagggcatatcagaggggccatct
aatcgctctaactcggtgtcttccctggacctggagggagagtctgtctctgagctgggg
gcggggccatctggtagcaatggcgtcgaggcactgcagctactggaacatgagcacgcc
accactcaggataacctggacgataagctgcgtaagtttgagatccgcgacatgatgggc
ttgacggacgacagggacatctccgagacggtcagtgagacgtggagcaccgacgtgctg
ggcagcgacttcgaccccaacatggacgaggaccggctgcaggacatcgcaggcgcggcg
gtggagaacatgctgggcagtctgctgtgtctcccaggttctggatcggttctcctcgac
ccgtacggttccaccatctctgagaccaccagtgaggcatggagtgtggaggtgctaccc
agcgactcagaagctgcagacctgaagcaggaggagcgtatgcaggagctggagagctgc
tccggggtgggaagcacctctgatgacaccgaggtcagggaggtcagctcacggcccagc
actccggggctcagcgtggtatcagccacgtcagaagatatccccaacaagatagaggac
ctgcgctcagagtgcagctcagacttcggtggaaaggattccgtgaccagtcctgatgga
gaggagtccgcacatggagcccactctttggcgtgtggttcctcccagaatgaatccttg
ctggccatgtttgatccgctctcttctggtgaaggctccacgggcaccatcgtccggccc
aaggtccactacatgcgtcccgcccacccccctccagacccccccatccccgaggccagt
gccatgggccccccggagccgcgcggaggccccctgtttgcaccccacgggctgatccag
gagctggagcacggcaagcagcggcactcgtacccggagcgcctggtgcgcagccgcagc
tccgacatcgtatgcggcggccgccggcccaccagcgagccctgcctcaaccgccgcacc
atcgccgaggaccgcgagcccgagccccccgccaacgccttcgccagcggagcagcgtcg
tctcccagcagagactcactcaagggggaggttgaagaccggaaggacagtgacgatgag
aagtcggaccggaaccgtccctggtggaagaagcgcttcgtccctgccattccgaaagct
ccaatcgcagctttcaggaagagggacaaaccagagaaagatgagctgggacctgaacga
catcctcatgatgattcttcacccaggctgagttcacaggcgcaggctgcagaggacatc
ttggataagtaccgcaacatcaagaggaccagtcccagtgatggagccacagccacctca
tatgaccagcatggcccagagcccacaggagagggagagagtggccatgactcccccaga
gacgaggctctacagaacatgtccacagacgacctcccagactcagcaagccagactgca
caacctcaggacaagttctccttcagcgatgccaagaagaaactgcgcctggccctctgt
gtggccgactccgtggtcttccccctcatgctccccgtcagcactcgcaatggcctgcct
gatcacacagacccagaagagaatgagatcgtgtgcttcctgaaggtgcagctggcggag
gccattaacctgcaggataaggctcagatggctcagctccaggagaccatgcgctgcgtc
agccgcctcgacgcccgaacctgccgcaagctgctcgccgccatcgccgacgactacagg
aagcgagctccgtacatcgcctacctgacgcggtgtcgccagggcctgcagacgtctcag
gctcacctggagcggctgctgcagcgcgtgctgcgggacaaggaggtggccaaccgctac
ttcaccaccgtctgcgtacgcctgctgctcgagcacatggaggccaagatgctcgacttc
atcagcgcattcgtggcctgcacggcgtcggacgataagacggcggcggtggaggacttc
ctgcggtacctgtacggcgccatggcccacgatgccatctggcagtacgccagcgaggac
cagctccaggacgcccagatggccatcgagcgcagcgtcatgaaccgcatcttcaaactg
gccttctaccccaaccaggacggggacatactcagagaccagcttcttcaggaacacatc
cagcgcctgaccaaagtcgtcacagccaatcacaaggccctgcaggtcccagaggtgtac
ctgagggaggcgccgtggccctctgcgcaggcggagatccgcaccataaacgcgtacaag
acgccgcgggacaaggtgcagtgcatcctgcgcatgtgctccaccatcatgaacctgctc
agcctcgccagcgacgactccgtgcccggcgccgacgacttcgtgcccgtgctcgtcttc
gttctcatcagggcgaaccctccctgcctgctgtccaccatccagtacatcaataatttc
tactccagtcggctgagtggggaggagtgctactggtggatgcagttcacagctgccgtg
gaattcatcaagaccatcgacgaccgcaagtga
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