Clupea harengus (Atlantic herring): 105894580
Help
Entry
105894580 CDS
T09045
Symbol
snrnp200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase isoform X1
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105894580 (snrnp200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
char03041
]
105894580 (snrnp200)
Enzymes [BR:
char01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105894580 (snrnp200)
Spliceosome [BR:
char03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
105894580 (snrnp200)
Complex C
U5 SnRNP specific factors
105894580 (snrnp200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Motif
Other DBs
NCBI-GeneID:
105894580
NCBI-ProteinID:
XP_031426741
Ensembl:
ENSCHAG00000004918
UniProt:
A0A6P8FUE0
LinkDB
All DBs
Position
7:complement(23240130..23259927)
Genome browser
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTKMGDKSQRTK
PQQLEERRAKRRKRDEDRHDINKMKGFTLLSEGIDDMVGIVYKPKTKETRETYEILLSFI
QAALGDQPRDILCGAADEVLAVLKSEKMRDKERRREVEQLLGPADDTRYHVLVNLGKKIS
DYGGDKELQNMDDNIDETYGVNVQFESDEEEGDEDQYGEVRDDGSDEDSEGEEAGVGSAL
SANLGITGDVMSAKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVQLLGFNTFDFIRVLRQHRRMILYCTMLASAQSEAEKDRIISKMEADQDLSKVL
YQLQETEKEDIIREERSRRERVRKSRVDDLESMDIDHGQSLAPRQLLDLEDLTFTQGSHF
MANKRCQLPDGSFRKQRKGYEEVHVPALKAKPFGDDEVLVNIDKIPKYSQAAFEGFKSLN
RIQSKLFKTAMETDENLLVCAPTGAGKTNVALMAMVREIGKHINMDGTINVDDFKIIYIA
PMRSLVQEMVGSFSKRLASYGIVVSELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGD
RTYTQLVRLIIIDEIHLLHDDRGPVLESLIARTIRNVELTQEDVRLIGLSATLPNYEDVA
TCLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVL
VFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGF
AIHHAGMTRVDRTLTEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWT
ELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVAKLPDMLN
AEVVLGNVQNVKDAVNWLGYSYLYVRMLRNPTLYGISHDDRASDPLLERRRMDLVHTASS
VLEKNNLVKYDKRSGAFQVTDLGRIASHFYITHDSIMTYNQLLKPTLSEIELFRVFSLSS
EFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADMV
YITQSAGRLMRAIFEIVLSRGWAQLTDKTMNLCKMIDKRMWLSMSPLRQFRKLPEEVIKK
IEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYLHQFPKLDLAVHIQPITRSTLKVEL
TITPDFQWDDKVHSSSEAFWILVEDVDSEVVLHHEYFLLKAKYAQDEHLVTFFVPVFEPL
PPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNAAFESLYQ
NKFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNAEGRCVYITPM
EALAEQVFVDWHQKFQDALNKKVVLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQR
KNVQNVSLFIVDETHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLANAKDVAH
WLGCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYHAIMKHSPSKPAVVF
VPSRRQTRLTAIDILTFCAADVVPQRFLHCTEKDLAPFVDKLTDLTLKETLSNGVGYLHE
GLSAGERRIVEQLFNSGAVQVVVVSRSLCWGSNISAHLVVVMDTQYYNGKIHAYVDYPIY
DVLQMVGKANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEIVT
KTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVENTLQDLEQSKCI
SIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYKNIPIRH
HEDALLKQLAQKVPHKLTNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEDILSKAVRL
IQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLRQLPHFTSDHIKRCTDKGVESV
FDIMELEDDERNVLLQLADGHMADVARFCNRYPNIELSYEVAEKDIIKSGGPVLILVQLE
REEEVTGPVIAPFFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPVQGVH
NYTLYFMSDAYMGCDQEYKFSVDVKEADSEGESDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgttactgcccgtagcttgcagtatgagtacaaagcgaactccaacttggtc
ttgcaagcggaccgttcgcttatcgaccgcacacggcgcgatgagcccaccggagaggtg
ctttcgctcgtggggaagctggaaggtaccaagatgggggacaagtcacagagaaccaag
ccacagcagctggaggagagacgcgcgaagaggaggaagcgagatgaggatcggcacgac
atcaacaagatgaagggcttcacgctgctgtccgagggcatcgatgacatggtgggcatc
gtctacaaacccaagacgaaggagaccagagagacctacgagatcctgctcagcttcatc
caggctgcgctcggagaccagccccgtgacatcctctgcggcgcggcggacgaggtcctg
gccgtgctgaagagcgaaaagatgcgggacaaggagcgccggcgggaggtggagcagctc
ctgggccccgccgacgacacgcgctaccacgtgctcgtcaacctgggcaagaagatctcc
gactacggaggagacaaggagctgcagaacatggatgataatattgatgagacgtatgga
gtcaatgtgcagtttgagtcggacgaggaggagggtgatgaagatcaatacggagaggtg
agggacgacggctcagatgaagacagtgagggagaggaggccggcgtgggctctgcactc
tctgccaatcttggcatcacaggtgacgtcatgagtgctaagaagaaggatctgcacccg
cgtgacatcgacgccttctggctccagagacagctcagccgtttctatgacgacgccatc
gtgtctcagaagaaggctgatgaggttttagaaatcctgaagacggcgagtgatgaccgc
gagtgtgagaaccagctggtgcagctgttgggctttaacacctttgacttcatcagagtc
cttcgccaacacagacgcatgatcctctactgcaccatgctggccagcgcacagagcgag
gcggagaaggaccgcatcatcagcaagatggaggccgaccaggacctgtccaaagtgctg
taccagctgcaggagacggagaaggaggacatcatccgcgaggagaggtcccgcagagag
agggtgaggaagtcgcgagtggacgacctggagtctatggacatcgaccatggacagtct
ctagcaccacggcagctgttggatctggaggacttgaccttcacacaggggagccacttc
atggccaacaagcgttgccagctgcccgatggatccttccggaaacagcgcaagggatac
gaggaggtgcacgtgcctgcactcaaggctaaaccctttggcgatgatgaggtgttggta
aacattgacaagattcctaagtattcccaggctgcttttgagggattcaaaagcctgaac
cgcattcagagcaagttgttcaagaccgcaatggagaccgatgaaaacctgctcgtgtgc
gctcccacgggtgcgggtaagaccaacgtggctctaatggccatggtgagagagattggc
aaacacatcaacatggacggcaccatcaacgtggacgacttcaagatcatctacatcgcc
cccatgcgctcgctggtacaggagatggtgggcagctttagcaagcgtctggcgagttat
ggcatcgtcgtgtcggagttgactggtgaccaccagctgtgtaaagaggagattaacgcc
acacagatcatcgtttgtacgcccgagaagtgggacatcatcacgcgcaaaggcggggac
cgcacatacacacagcttgtgcgcctcatcatcattgatgagatccacctgctgcatgac
gaccgtggtcccgtgctggagtctctgatcgctcgtaccatccgtaacgtggagctgacc
caggaggacgtgcgtctgatcggcctgagtgccacgctgcccaactacgaggacgtggcc
acatgcctgcgagtcgaccctgccaagggcctcttctacttcgacaacagtttccgtccc
gttcctctggaacagacctacgttggcatcacggagaagaaggccattaagcgcttccag
atcatgaatgagatcgtctacgagaagatcatggagcatgccggaaagaaccaggtgctg
gtgtttgtccactcgaggaaggagacggggaagacggcccgggccatcagagacatgtgt
ctggagaaggacacgctggggctcttcctgagggaggggtccgcctccactgaggtgctg
cggactgaggccgagcagtgcaagaatctggagctgaaggacctgctgccgtacggcttt
gccatccaccacgccggcatgaccagagtggacaggaccctgacggaggatctgtttgcc
gaccggcacatccaggtgctggtgtcaacagccaccttggcctggggtgtgaacttgccc
gcccacacagtcatcatcaaaggcacacaggtgtacagcccagagaaggggcgctggaca
gagctgggggccctggacatcctgcagatgttggggcgtgcgggtcgaccccagtacgac
acgaagggcgagggcatcctgatcacgtcccacggggagctgcagtactacctgtccctg
ctcaaccagcagctgcccatcgagagtcagatggtggccaagctgcccgacatgctcaac
gctgaggtcgtcctgggcaacgtgcagaacgtcaaggatgcagtgaactggctgggctac
tcctacctgtatgtgcgtatgctgcggaaccccaccctgtacggcatctcccacgacgac
cgcgccagtgacccgctgctggagcgccggcgcatggacctggtgcacaccgcctccagc
gtgctggagaagaacaacctcgtcaagtacgacaagaggagcggggctttccaggtgaca
gacctgggccgtattgccagtcacttctacatcacccatgactccatcatgacctacaac
cagctgctgaagcccaccctgagtgagatcgagctcttccgcgtcttctccctctcctcc
gagttcaggaacatcaccgtcagagaggaggagaagctggagctgcagaagcttctggaa
agagtgcccatccccgtgaaggagagcattgaggagcccagtgctaagattaacgtgttg
ctgcaggcctacatctctcagctcaagctggaaggctttgccctcatggccgacatggtc
tacatcacacagagtgctggtcgtctgatgagggccatctttgagatcgttctgagccgt
ggctgggctcagcttacagacaaaaccatgaacctttgcaagatgattgacaagaggatg
tggctgtctatgtctcccctgcgccagttccggaagcttccagaggaggtcatcaagaag
attgagaagaagaacttccccttcgagcgcctctacgatctcaaccacaatgagattggt
gagctgatccgtatgcctaagatggggaagaccatccacaagtacctgcaccagttcccc
aaactggacctggccgtccacatccaaccaatcacacgctccacactcaaagtagagctc
accatcacaccagacttccagtgggacgacaaggtccacagctcgtcggaggccttctgg
atcctggtggaggacgtggacagtgaggtggtgctgcaccacgagtacttcctgctcaag
gccaagtacgcccaggacgagcacctcgtcaccttcttcgtgcccgtgttcgagccgctg
cccccgcagtacttcatccgcgtggtgtctgaccgctggctctcgtgcgagacgcagctg
cccgtgtcgttccgtcacctgatcctcccggagaagtacccaccccccaccgagctgctg
gacctgcagcccctccccgtcaccgccctgcggaacgctgcctttgagagcctctaccag
aacaagttccccttcttcaaccccatccagactcaggtgtttaacgccgtgtacaacagc
gacgataatgtgttcgtgggcgcccccactggcagtgggaagaccatctgtgctgagttt
gccatcctcaggatgctgcttcacaacgcagaagggcgctgtgtctacatcacaccgatg
gaggcgctggccgaacaggtgtttgtggactggcaccagaagttccaggacgccctgaac
aagaaggtggttctgctgacgggcgagaccagcacggacctgaagctgctgggcaagggt
gacatcatcgtgtccacccccgacaagtgggacatcctgtcgcgccgctggaagcagagg
aagaacgtgcagaacgtcagcctcttcatcgtggacgagacacacctcatagggggagag
aacgggccggttctggaggtgatctgctcgaggatgcgctacatctcgtcccagatcgag
cggcccatccgtatcgtggctctgagctcgtcgctggccaacgccaaagatgtggcccac
tggctgggctgcagcaccacggccaccttcaacttccaccccaacgtcaggcccgtgccc
ctggagctgcacatacagggctttaatgtgagtcacacacagacgcgactgctgtccatg
gccaagccggtgtatcacgctatcatgaaacactcacccagcaaaccggctgtggtgttc
gtgccgtcacgccgacagactcgcctcacggccatcgacatcctcaccttctgtgccgca
gatgtcgtacctcaaaggttcctgcactgcacagagaaggacttggctcccttcgtggat
aagctgactgatctgaccctgaaggagactctgtctaatggggtgggctacctgcacgag
ggcctctctgctggcgagcgcaggattgtagagcagctctttaactcaggtgctgttcag
gtggttgtggtgtctcgctccctctgttggggttcaaacatctcagcgcacttagtggtt
gtcatggatacccagtactacaatggcaaaatccatgcctacgtggactaccccatctat
gatgttctacagatggtggggaaggccaatcgccccctgcaggacgacgaggggcgctgc
gtcatcatgtgccagggctccaagaaggacttctttaagaagttcctgtacgagccgctg
ccggtggagtctcatctggaccactgtctccatgaccacttcaacgcagagatcgtcacc
aagaccatcgagaacaagcaggacgccgtcgactacctgacctggaccttcctctacagg
cgcatgacgcagaaccccaactactacaatctgcagggtatgtctcataggcatctgtcg
gaccacctgtcggagctggtggagaacaccctgcaggacctggagcagtccaagtgcatc
agcatcgaggatgagatggacgtggctcctctgaacttgggcatgatcgccgcctactac
tacatcaactacaccaccatcgagttgttcagcatgtctcttaacgccaagacgaagatc
cgcggcctgattgagatcatctccaatgccgcagagtacaagaacattcccatcaggcac
cacgaggacgccctcctcaaacagctggcgcagaaggtgcctcacaagctgaccaacccc
aagttcaacgacccgcacgtgaagaccaacctgctgctgcaggcccacctgtcccgcatg
cagctgagcgccgagctacagtctgacaccgaagacatcctcagcaaggcggtgcgtctg
atccaggcctgtgtggacgtgttgtccagtaacggctggctgagccctgccctcgctgcc
atggagctggcccagatggtcacccaggccatgtggtccaaggactcctacctgcggcag
ctgccacacttcacctcagaccacatcaagaggtgcactgacaagggagtggagagcgtc
tttgacatcatggagctggaggatgatgagcgtaacgtgctgctgcagctggctgatggc
cacatggccgacgtggcgcgcttctgtaaccgctaccccaacatcgagctctcctacgag
gtggccgagaaggacatcatcaagagtggtggcccagttctgatcctggtgcagctggag
agagaggaggaggttaccggtccagtcattgcaccattcttccctcagaaacgtgaggag
ggctggtgggtggtgatcggagaccccaagtccaacagtctaatctccatcaagaggctc
acgctacagcagaaggccaaggtgaagctggactttgtggccccggtgcagggcgttcac
aactacaccctctacttcatgagcgacgcctacatgggttgcgaccaggagtacaagttc
agcgtggacgttaaggaggccgacagcgagggagagagcgactccgactga
DBGET
integrated database retrieval system
