Clupea harengus (Atlantic herring): 105894610
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Entry
105894610 CDS
T09045
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
char03021
]
105894610 (chd1)
03036 Chromosome and associated proteins [BR:
char03036
]
105894610 (chd1)
Transcription machinery [BR:
char03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
105894610 (chd1)
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
105894610 (chd1)
SLIK complex
105894610 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
Helicase_C
Chromo
HDA2-3
ResIII
DEAD
SLIDE
DUF1357
CHDCT2
Motif
Other DBs
NCBI-GeneID:
105894610
NCBI-ProteinID:
XP_031434326
Ensembl:
ENSCHAG00000018116
UniProt:
A0A6P8GC29
LinkDB
All DBs
Position
12:complement(27137777..27154371)
Genome browser
AA seq
1325 aa
AA seq
DB search
MEARSEDESASNSSGESSNSDDESGSGSGSGSGSSSSSSSSSSSQSGSSGSGSGSDSGSQ
SVLEVKPQYPGSAKVGHAQETAATTATTTQQQQQQQQQQQQQQQSSSNSSDEDSSSSDDS
DDDSSRQKSKGSGSGSDSDSGSGSDSGSNSGSDSSKEAEGENSDASASDYEPSHKVKSRK
PPTKANARNGKKSKAQRKKPPGSSSDEDDYDKKALAGPRRQATVNVSYKEDDEMKTDSDD
LVEVTGEDVPPPEEDEFETLERVMDTRIARKGATGATTTVYAVEADGDPNGTFNPQKEAG
DVQYLIKWKGWSHIHNTWETEDTLKLQNVKGMKKLDNFKKKKSEERKWLKASSPEDVEYF
ICQQELHDDLHSQYQFVERIIGHSNQKSVAGYPDYLCKWQGLPYSECSWEDGALIGRKFQ
KCIDDYMCRNHSKTIPYRDCKVLKQRPRFMPMKKQPTFISEGLELRDYQLDGLNWMAHSW
CKGNSCILADEMGLGKTIQTISFLSYLFQEHQLYGPFLLVVPLSTLTSWQREIQLWAPHM
NVVVYLGDITSRNMIRQQEWMHVQNKRLKLNILLTTYEILLKDKSFLGNVSWAFIGVDEA
HRLKNDDSLLYKTMMEFRSNHRLLITGTPLQNSLKELWSLLHFIMPEKFHSWETFEEDHA
KGRDSGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRLEMSAIQKQYYKWILTRNYKA
LSKGKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQHLIRSSGKLLLLDKLL
LRLKERGHRVLIFSQMVRMLDILAEYLKCRQFLFQRLDGSIKGEMRRQALDHFNAEGSED
FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKRQVNIYRLVTKGS
VEEDIIERAKKKMVLDHLVIQRMDTTGKTVLDTGAAPSSSTPFNKEELSAILKFGAEELF
KEPEGEEQDPQEMDIDEILKRAETRETDPGQSSIGEELLSQFKVANFSMMEEDEVDMNPD
RGHRGHNWDDIIPEEQRRRLEEEERQKELEEIYLLPRMRNCAKQISFNGNEGRRSRNRRY
SGSDSDSVSDRKRPKKRGRPRTIPRENIKGFTDAEIRRFIKSYKKFGGPLERLDAIARDA
ELVDKSEHDLRRLAETVHNGCVRTLRENPCGPEKTSGGRRGKVKGPTFRISGVQVNAKLV
ISHEEELAPLHKAIPADAEERKRYKLPCHSKAAHFDIEWGKEDDASLLIGIYEYGYGSWE
MIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLLSKDLAKKEAQRQAGTVSLRPY
LRRSR
NT seq
3978 nt
NT seq
+upstream
nt +downstream
nt
atggaggcacgcagtgaagacgaaagcgcgagcaacagcagcggagagtcaagtaactct
gatgacgagtcaggatccgggtcaggctctgggtcagggtccagctccagcagcagtagc
tccagcagcagccaatcagggagcagcggctcaggaagtggctctgactccggcagccaa
tcagttttggaagtcaaaccccagtatcctggcagtgcaaaggtcggccatgctcaggaa
acagcagctacaacagcaacaacaacacaacaacagcaacagcagcagcagcaacaacag
caacagcagcagagctcttcaaatagctcagatgaggattcttccagcagcgatgactcg
gatgatgattcgtcaagacaaaaaagcaaagggtctggctcagggtccgattcagactcg
ggctcagggtccgattctggcagcaactctggttccgattcctctaaagaggcggaggga
gaaaacagtgacgcttccgcatcagactacgaacctagtcacaaagtgaagagccgcaag
ccaccgaccaaggccaacgccaggaacggcaaaaagagcaaagcccagaggaagaagccg
ccgggctcctcctcggacgaggacgactatgacaagaaggcgctggccggcccgcggcgg
caggccacggttaacgtgagctacaaggaggacgacgagatgaagacggactcggacgac
ctggtggaggtgaccggtgaggacgtgccgcccccggaggaggacgagtttgagacgctg
gaacgagtaatggacacaaggatcgcccggaaaggagccactggggccaccactacagtg
tatgcggttgaggcggacggagaccccaacggaaccttcaaccctcagaaggaggcggga
gacgtgcagtacctgatcaagtggaagggctggtcccacatccacaacacctgggagacg
gaggacacgctcaagctgcagaacgtcaagggcatgaagaaactggacaacttcaagaag
aagaaatcggaggagaggaaatggctaaaagcttcatcaccagaagatgttgagtacttc
atttgtcaacaggaacttcatgacgacttgcactctcagtaccagtttgtggagagaatt
attggtcactcaaaccagaagtcagtggcaggttatcctgactacctgtgcaagtggcag
gggttgccttactcggagtgcagctgggaggacggtgccctcatcggcaggaagttccag
aagtgcatcgatgattacatgtgtcgcaaccatagcaagaccattccctatagagactgc
aaggttttgaagcagaggcccaggtttatgcccatgaagaaacagcccacctttatctcc
gagggcctggagctccgagactaccagctggacggcttaaactggatggctcactcctgg
tgcaaagggaacagctgtatcctggcagacgagatgggcctgggcaagaccatccagacc
atctccttcctcagctacctgttccaggagcaccagctgtacgggccctttctgctggtg
gtgcccctgtccacgctcacctcctggcagcgcgagatccagctgtgggcgccgcacatg
aacgtggtggtgtacctgggcgacatcaccagcaggaacatgatcaggcaacaggagtgg
atgcacgttcagaacaagcgactgaagctgaacattttgctcaccacttacgagatcctc
ttgaaggataagtcattcctggggaacgtgagctgggccttcatcggcgtggacgaggcc
cacaggctgaagaacgacgactcgctcctctacaagacgatgatggagttccgctccaac
cacaggctcctcatcacagggacgccgctgcagaactccctgaaggagctctggtccctg
ctgcacttcatcatgcccgagaagtttcactcgtgggagacgtttgaggaggaccacgcc
aagggccgcgactccggctacgccagcctacacaaggagctggagcccttcctgctgcgc
cgcgtcaagaaggacgtggagaagtcgctgcccgccaaggtggagcagatcctcagactg
gagatgagcgccatccagaagcagtactacaagtggattttaacccgaaactacaaagct
cttagcaaaggcaagggcagtacgtctggcttcctcaacatcatgatggagttgaaaaag
tgctgcaaccactgctacctcatcaagccgccagatgacaacgagttctacaacaaacag
gaggccttgcagcacttgatccgtagcagtgggaagctgttgttgctggacaagctgctg
ctgcggctgaaggagcggggccaccgcgtgctgatcttctctcagatggtccggatgctg
gacatcctggccgagtacctgaagtgccggcagttcctcttccagcggttagatggctcc
atcaaaggcgagatgagaaggcaggcactggatcatttcaatgcagagggctcggaggac
ttctgtttcttgctgtccacgagagctggaggtctggggatcaacctggcgtctgcggac
acagtggtgatcttcgactcggactggaacccccaaaatgacctgcaggcccaggccaga
gcgcacagaatcggccaaaagagacaggtgaacatctaccgcctggtcaccaaagggtcc
gtcgaggaggacatcatcgagcgagccaagaagaagatggtgctggaccacctggtcatc
cagagaatggacaccacaggcaagactgttctggacaccggcgctgctccctccagttcc
accccgttcaacaaggaggagctgtcggccatcctgaagtttggtgcggaggagctcttc
aaggagccagagggggaggagcaggatcctcaggagatggacattgatgagatcctgaag
cgagcggagacgagggagactgaccctggccaatccagtataggagaagagctcctgtct
cagttcaaggtggcgaacttctccatgatggaggaggatgaggtggacatgaacccggat
cggggtcacaggggtcataactgggatgacatcatccccgaggagcagcggcgccgcctg
gaggaggaggagcggcagaaggagctggaggagatctacctgctgccgcgcatgaggaac
tgtgccaagcagataagctttaatgggaacgagggccgccgcagccggaaccggaggtac
tcgggctcggacagcgactccgtgtcggaccgcaagaggcccaagaagcgcggtcgacct
cggaccatcccgcgagagaacatcaagggcttcacagacgcagaaatccgaagattcatc
aagagctacaaaaaatttgggggccctctggaaaggttagatgcgattgcgcgagacgca
gagctggtggataagtcggagcacgacctgaggcgactggcggagacggtgcacaacggc
tgcgtcaggacgttgagggagaacccctgtggaccagaaaagacctcaggaggcaggcgg
ggcaaggtgaaggggcccacgttccggatctcaggcgtgcaggtgaacgccaagctggtc
atctcccacgaagaggagctggcacccctccacaaggccatccccgccgacgcagaggag
aggaagaggtataaattgccttgccattcaaaggcggctcactttgacattgagtggggg
aaggaggacgatgccagtttgctgatcggcatctatgagtatggctacgggagctgggag
atgatcaagatggaccccgacctcaacctcactcataagttgctgcctgacgaccccgac
aagaaaccccaggccaagcagctgcagacgcgcgcggactacctcatcaaattactgagc
aaagacctggccaagaaggaggcacagcggcaagcgggcacggtaagcctcagaccgtac
ctgcgccggtcgcggtaa
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integrated database retrieval system
