Clupea harengus (Atlantic herring): 105894644
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Entry
105894644 CDS
T09045
Symbol
dcp2
Name
(RefSeq) LOW QUALITY PROTEIN: m7GpppN-mRNA hydrolase
KO
K12613
mRNA-decapping enzyme subunit 2 [EC:
3.6.1.62
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105894644 (dcp2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105894644 (dcp2)
Enzymes [BR:
char01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.62 5'-(N7-methylguanosine 5'-triphospho)-[mRNA] hydrolase
105894644 (dcp2)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105894644 (dcp2)
mRNA degradation factors
5'-3' decay
Decapping complex
105894644 (dcp2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP2
NUDIX
NUDIX_4
Motif
Other DBs
NCBI-GeneID:
105894644
NCBI-ProteinID:
XP_012676632
UniProt:
A0A6P3VNB9
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Position
12:complement(27123849..27131977)
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AA seq
396 aa
AA seq
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METKRGDIPNGVLDDLCSRFILHIPSEERDNAIRVCFQIELAHWFYLDFCMQNSPGLPQC
GIRDFAKAVFNHCPFLLPNGEDVQKVLDQWKEYKMGVPTYGAIILDETLDNALLVQGYLA
KSGWGFPKGKVNEDEAPHDCAVREVMEETSFDIRDRICKDTYIEQKITDQLARLYIIPGV
PKDTKFNPKTRKEIRNIEWFAVEQLPCHRNDMTPKSKLGLAPNKFFMAIPFVRPLREWVA
KRRGESTDSDEDFASNGSTPCKPHVRPKVGRTPVLTEASPGDVWSKQKQQKPIGLPAQEI
KQNHSAKGNGKKHQDSPNLKKKSNGVSTQQKEEKKLQPRRLQDNFDTDAACNLNGLNGQG
ASRPDAVNGDFEHIMSSRSFLGFKFDREAIMKCFES
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atggaaacaaaacgaggggatattcccaacggcgtattggacgacctttgcagccgcttc
atccttcacatccccagtgaagagagagacaatgccattcgagtgtgcttccagattgag
ctcgcccattggttttacctggatttctgcatgcagaattcaccaggactacctcagtgt
gggataagagacttcgccaaggctgtttttaatcattgtccctttctgctgccaaatggg
gaggatgtacagaaagttttagatcaatggaaggagtacaagatgggtgttcccacatat
ggtgcaattattctagatgagacattggacaatgcattgctagttcagggctacctggcc
aagtcaggatggggcttcccaaagggaaaagtcaatgaggatgaggccccccatgactgt
gcagtgcgggaggtgatggaagaaacaagttttgatatccgagatcgcatctgcaaagac
acgtacatcgagcagaagatcacagaccagctggctcgactgtacataatacccggagtc
ccaaaggacaccaaattcaatcccaaaacaagaaaggagattaggaacatagaatggttt
gctgttgagcagctcccatgtcacaggaatgatatgactcccaaatccaaactcggacta
gctcccaacaaatttttcatggccattccattcgtcagaccgctcagagaatgggttgcc
aagcgcaggggggaatctacagacagtgatgaggatttcgcctccaatggcagcactccg
tgtaaaccacacgtccggcctaaagtcggacgtaccccagtgttgactgaagcgtctcca
ggagacgtctggtccaagcaaaagcaacaaaagccgatcgggctgccagcgcaggaaatc
aagcagaaccacagtgcaaaaggcaatgggaagaagcaccaggactctcccaacctaaag
aaaaaatcaaacggggtcagcacacaacagaaagaagaaaagaaacttcagcccagaaga
ctacaagacaacttcgacacagatgctgcctgcaacttgaacggcctcaacggccagggc
gcgagccggccggacgccgtcaatggtgactttgagcacatcatgtcctccaggtccttc
ctgggctttaagtttgacagggaagccatcatgaagtgttttgagtcctga
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