KEGG   Clupea harengus (Atlantic herring): 105894673
Entry
105894673         CDS       T09045                                 
Symbol
tbpl1
Name
(RefSeq) TATA box-binding protein-like 1
  KO
K03120  transcription initiation factor TFIID TATA-box-binding protein
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:char00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    105894673 (tbpl1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:char03000]
    105894673 (tbpl1)
   03021 Transcription machinery [BR:char03021]
    105894673 (tbpl1)
Transcription factors [BR:char03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   TATA-binding proteins
    105894673 (tbpl1)
Transcription machinery [BR:char03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     105894673 (tbpl1)
  RNA polymerase III system
    TFIIIB
     105894673 (tbpl1)
  RNA polymerase I system
    SL1/TIF-1B
     105894673 (tbpl1)
SSDB
Motif
Pfam: TBP P22_Gp10_C
Other DBs
NCBI-GeneID: 105894673
NCBI-ProteinID: XP_012676669
Ensembl: ENSCHAG00000022560
UniProt: A0A6P8GEF9
LinkDB
Position
15
AA seq 186 aa
MEPGGDVALDIIVSNVVAVFRVRCHLNLRTIALEGLNVIYKPEVGKVLMKLRKPKITASI
WSSGKIICTGATSEEDAKLGARRLARVLQKLGFKVRFSDFKVVNVLAVCSLPFQIRLIQF
AKNNRPIASYEPELHPAVSYRIKHLKATIQIFSTGSITVTGPSVQNVATAVEQIYPLLFE
CGRALR
NT seq 561 nt   +upstreamnt  +downstreamnt
atggaacccggtggcgatgtggcgctggatatcatcgtttccaacgtcgtggccgtcttt
agagtcagatgtcatctgaatctgcggaccattgcactagaaggattgaatgtcatatac
aaaccagaagtcgggaaagtgttgatgaagctacgtaaaccgaaaatcaccgcctctatc
tggtcctcaggaaaaattatttgcactggagcaacaagtgaagaggatgccaagcttggt
gcccgaaggctcgctcgcgtcttgcagaaacttggtttcaaggtgaggttctcggacttc
aaggtggtaaacgttctggctgtctgctctctgccctttcaaatccgtctcatccagttc
gccaagaacaaccggcccatcgccagttacgagccggagctccaccctgctgtttcatac
cgcattaaacacctcaaggctacaatacagatcttctccaccggcagcatcactgtcaca
ggaccaagtgttcagaatgtggccactgcggtggaacagatctacccgctgctgttcgaa
tgtgggagagcactgagataa

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