Clupea harengus (Atlantic herring): 105894734
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Entry
105894734 CDS
T09045
Symbol
ubr5
Name
(RefSeq) E3 ubiquitin-protein ligase UBR5 isoform X1
KO
K10593
E3 ubiquitin-protein ligase EDD1 [EC:
2.3.2.26
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
105894734 (ubr5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
105894734 (ubr5)
Enzymes [BR:
char01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
105894734 (ubr5)
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
HECT type E3
105894734 (ubr5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
E3_UbLigase_EDD
MLLE
zf-UBR
MCM9_N
Motif
Other DBs
NCBI-GeneID:
105894734
NCBI-ProteinID:
XP_031432240
Ensembl:
ENSCHAG00000014622
UniProt:
A0A6P8GAT0
LinkDB
All DBs
Position
11:23633166..23669612
Genome browser
AA seq
2921 aa
AA seq
DB search
MTSIHFVVHPLPGTEDQLNDRLREVSEKLNKYNYNSHPHLSLLEQATLKQCVVGPNHAGF
LLEDGRVCRIGFAVQPDRLELGKADGTEGSKLSSGSGAGRSSRPGRTSDPPWFLPGSDTL
GRLAGNTLGSRWSSGVNGGGSGGGGGSSGGGGAGGGSGSSGAGGGGGGGGGGGGGGGSSG
RSSTAARDSRRQTRVIRTGRDRGSGLLGSQPQPVIPASVIPEELISQAQVVLQGKSRSVI
IRELQRTNLDVNLAVNNLLSRDDEDGDDGDDTASESYLPGGTATSMLLSSLRKIHTEDLM
SLLDADIHSAHPSVIIDADAMFSEDISYFGYPSFRRSSLSRLSSSRVLLLPLERDSELLR
ERESVLRLRERRWLDGASFDAERGSTSREGEPNLDKKSAPLQSPVSLSEELQWWPDKDGT
RFVSIASLYSELVAVSSKGELYQWKWSDPEPYRNAQNPSIHHPRVTSLGLTNEKITLLSA
NSIRATVATESNKVATWVDDSLSTVASKLEHGAQSFPELQGERIVSLHCCALYTCAQLEN
SLYWWGVVPFSQRKKMLEKARAKNKKPKSSAGISSIPNITVGTQVCLRNNPLYHAGAVAF
SVNAGIPKVGMLLESVWNMNESCRFQLRSPESLKNMEKSTKTQETKTESKPELVKTEMGP
PPSPASTCSDASSIASSASLPYKRRRSTPAPKEEEKVNEEQWPLREVVFVEDVKNVPVGK
VGGARGPPDPLCAAGMRTSPGPPPCVLSETDVDADAYIATVLKVDGAYVAVKFPGTSSSV
SSQSAAPTDSDPSSLLQDCRLLRIDELQVVKTGGTPKVPDCFQRTPKKLCIPEKAEILAV
NVDSKGVHAVLKTGSWVRYCIFDLATGKAEQENHFPTSNQAFLGQSERNVAIFTAGQESP
IILRDGNGTIYPMAKDCMGGIRDPDWLDLPPITSLGMGVHSLANLPSNSTIKKKAAVIIM
AVEKQTLMQHVLRCDYEACRQYLAGLEQAVLLEQNPHALDALLGHRCDGNRNVLHASVSV
CFPVSNKETKEEEEAERSERNTFAERLSAVEAIANAISVVSSNSSGNRTGSSSSRGLRLR
EMMRRSLRAAGLGRHESGPSSSDHQDPVSPPIAPPSWVPDPPPMDPDGDIDFILAPAVGS
LTTASTGTSQGPSTSTIPAGPSTEPSVVESKDRKANAHLILKLMCDSVVLRPHLRQLLSA
KDARGMTPFMLAVSGRAYPAAITVLEAAQKIAKGESGSGDKEDADSLFMEMICPSGTNPD
DSPLYVLCCNDTCSFTWTGAEHINQDIFECRTCGLLESLCCCTECARVCHKGHDCKLKRT
SPTAYCDCWEKCKCKTLIAGQKAARLDLLYRLLTTTNLVTTPNSRGEHILLFLVQTVARQ
SVEHCQYRPPRIREDRNRKAASAEDSDMPDHDLEPPRFAQLALERVLQDWNALKSMIMFG
SQENKDPLSASSRIAHLLPEEQVYLNQQSGTIRLDCFTHCLIVKCAPDITFIDTLLGTLV
KELQNKYTPGRRDEAVIVTRRFLRSVARVFVILSVEMASSKKKNNFIPQPIGKCRRVFQA
LLPYATEELCNVAESLIVPVRMGIARPTAPFTLASTSIDAVQGSEELFSVEPLPPRPSPD
QSSNSSQAASSYIIRTPQPHRSSQSQPVRGRDEEQDDIVSADVEEVEVVEGVAGEEDHHD
DQEEQGEENAEAEGQHDEHDEDGSDMELDLLAAAETESDSESNHSNQDNASGRRSVVTAA
TAGSEAGASSVPAFFSEDDSQSNDSSDSDSSSSQSDDVDQETFLVDEPLERTTGMAHANS
AAQAPRSMQWAVRTTPNQRTAGGAPSSTSTPAGQRALPPQPASSTGLIYIDPSNLRRSSA
ISNSAAVAAAALEASNSSSYLTSASSLARAYSIVIRQISDLMGLIPKYNHLVYSQYPAAV
KLTYQDAVNLQNFVEDKLIPTWNWMVSIMDSTEAQLRYGSALSSAGDPGHPSHPLHASQH
AGRRERMTAREEASLRTLEGRRRAATLLTARQGMMSARGDFLNYALSLMRSHNDEHSDVL
PVLDVCSLKHVAYVFQALIYWIKAMNQQTTLDTPQMDRKRNREILELGLDNEDSEHENDE
DTNQSFALEYQEGHKRKAVRQKHGKKKRAAVKGSTLQDKDDDPVPAETGQNHSFFRRSDS
MTFLGCIPPNPFEVPLAEAIPLADQPHLLQPNARKEDLFGRPSQGLYSSSYMASKGLADM
SADRNCLEILPTKMSYSANMKNVMSMELRPREELAAAEQEMDTSKPGPSPHDLAAQLKSS
LLAEIGLTESDGPPLPSFRPHCSFMGMVISHDMLLGRWRLSLELFGRVFMEDVGAEPGSI
LTELGGFEVKESKFRREMEKLRNLQSRDLALEVDRDRDQLIQQTMRQLNTHFGRRCTTTP
MAVHRVKVTFKDEPGEGSGVARSFYTAIAQAFLSNEKLPNLDCVQSVSKGMQASNLMQRL
RNRDRERERRSGGLRAGSRRDRDRDSRRQLSIDTRPFRPASEGNPSDEPDPLPAHRQALG
ERLYPRVHAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVEEAMELLIAHGRENGA
DSILDLGVLDAPEKAQQENRKRHGSTRSVVDMELDDPDDGDDNAPLFYQPGKRGFYSPRP
GKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYES
LRQLILHSQAGEAEAVFSAMDLAFAIDLCKEEGAGQVELLTGGVNMPVTPLNVYEYVRKY
AEHRMLVVAEQPLHAMRKGLLDVLPKNALEDLTAEDFRLLVNGCGEVNVQMLISFTSFND
ESGENAEKLLQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLPASEEGFQPMPSITIRPPD
DQHLPTANTCISRLYVPLYSSKQILKQKLLLAIKTKNFGFV
NT seq
8766 nt
NT seq
+upstream
nt +downstream
nt
atgacatctatacacttcgtggttcacccgttgcccgggaccgaggaccagctcaatgac
aggctccgggaagtctctgagaaactcaacaaatacaattacaacagccacccccacctc
agtcttcttgagcaggccacattgaaacagtgtgtggttggaccaaaccatgctggtttt
ctccttgaggatgggcgtgtgtgtcggattggctttgccgtccagcccgatcgcctggag
ctggggaaagcagacggcactgagggttcaaagttgagcagtgggtcaggggcaggaagg
agctccaggccaggcaggactagtgatccgccctggttcctgcctggttcagacactttg
ggcagactggcaggcaacacccttgggagccgttggagctcgggggtgaatggtggaggc
agcggtggtggcggcggcagcagcgggggaggcggtgccgggggtggcagcgggagcagc
ggagctggaggaggtggtggcggcggcgggggtgggggaggtggcggaggctcgtccggc
cgctcctccacagcagcgcgggactcgcgtcggcagacacgagtcatccgcaccggccga
gaccgcggctccggcctgctgggcagccagccccagccagtcatcccggcctcggtcatc
ccagaggagctgatttctcaggcccaggtggttctgcagggcaagtcacgtagtgtgatc
attcgtgagctgcagcgcaccaacctggacgtgaacctagctgtcaacaacctgctgagc
cgcgatgacgaggacggtgacgatggtgacgacacagccagcgagtcttacctgcctgga
ggtacggccacttcgatgctgctctcttctcttagaaaaatacatacagaagacctcatg
tcactgctagatgcagacatccactcggctcaccccagcgtcatcatcgacgcagacgcc
atgttctccgaggacataagctacttcggctacccctcctttcgccgatcctccctgtca
cgcctcagttcctcacgagttctccttctccccttagagcgcgactctgagctgctgcgg
gagcgcgagtcggtgctgaggctgcgggagcgccgctggctggacggcgcctccttcgac
gccgagcgcggctccaccagccgcgagggcgagcccaacctggacaagaagagcgcgccg
ctgcagagccccgtctccctcagcgaggagctccagtggtggcccgacaaggatggcacc
cggtttgtgagcattgcctccttgtactctgagctagtagcagtgagctccaagggagag
ctctatcagtggaaatggagtgaccctgaaccctacagaaacgcacagaatccctcgatc
catcacccccgggtcacttccttgggcttgaccaatgagaagatcacacttctgtccgcc
aacagtataagagctactgtagccaccgagtccaacaaggtggcgacgtgggtggacgac
tctctgagcacagtggcctccaagctggagcacggagcgcagagcttccctgagctgcag
ggcgagcgcatcgtctcgctccattgctgcgccctctacacctgcgcgcagctggagaac
agcctctactggtggggtgtcgtgccttttagtcagcggaagaagatgcttgaaaaggct
cgagccaagaacaagaagccaaagtccagtgctggcatctcgtccatccccaacatcacc
gtgggaacccaggtgtgcctgaggaataaccctctgtaccatgctggagccgtggccttc
tccgtcaatgccggcatccctaaggtgggcatgctgctggagtcggtgtggaacatgaac
gagagctgcaggttccagctgcgctcaccggagagcctcaagaacatggagaagagcacc
aagacccaggagacaaagacggagagcaagcctgagctagtgaagactgagatgggcccc
cctccctctcctgcgtccacgtgcagcgacgcctcctccatcgccagcagcgcctcgctg
ccttacaagcggcggcgctccacacccgcccctaaggaggaggagaaagtcaacgaggag
cagtggcctctgcgcgaggtcgtgttcgtggaggacgttaaaaacgtccccgtgggaaag
gtgggtggtgcccgcggaccgcctgatccgctttgtgccgccggaatgagaacatctcct
ggcccgcctccttgtgtcctttcagaaacagatgtagatgcagatgcgtacatagccacg
gtgctaaaagtcgatggtgcgtatgttgctgtaaaatttccagggacctcgagcagcgtg
agcagccagagcgcagctcccactgactctgacccctcctcactgctgcaagactgcagg
ctcctcagaatagatgagctacaggttgtaaaaactggtggaactcctaaagttcccgat
tgctttcagcgcacacctaaaaaactttgcatcccagaaaaggctgaaattctagccgtg
aatgttgactccaaaggagtccatgccgtgttgaaaacaggcagttgggttaggtactgc
atctttgacttggcaactgggaaagctgagcaggagaatcattttccgaccagcaaccag
gcttttctgggtcagagtgagcgcaacgtggccatcttcaccgcaggacaggaatctcct
attatcctgcgcgatggcaatggcacaatttaccccatggccaaagactgtatgggtggt
attagagaccccgattggctggatctgccgcccatcactagcttgggcatgggagtgcat
tctctcgccaatctccccagcaactctaccatcaaaaagaaagctgctgtcatcatcatg
gctgtagagaagcagaccctgatgcagcacgtgctgcgctgtgactacgaggcgtgccgg
cagtacctggccggcctggagcaggcggtgctgctggagcagaacccccacgcactcgat
gccctgctgggccatcgctgcgacggcaaccgcaacgtgctgcacgcctccgtctctgtc
tgcttccccgtcagcaacaaggagaccaaggaggaggaagaagccgagcgctcggagagg
aacacgtttgctgagcggctgtcggcggtagaggctattgctaacgccatctcggtggtg
tccagcaacagctctggcaacaggactggctcgtccagcagcagaggtctgcgtctgaga
gagatgatgagacgctccctcagagctgcgggcctcggacgccacgagtctgggccctcc
tccagtgaccaccaggaccccgtgtcccctcccatcgcaccccccagctgggtgcccgac
ccccctcccatggatccagatggtgacattgatttcatcttggcccctgcagtgggctcc
ctcaccaccgcctccaccggcaccagccagggccccagcacctccaccatacctgcaggg
ccatcgacggagccctcggtggtggagtccaaagatcgcaaggccaacgctcacctcatc
ctcaagctcatgtgtgacagcgtggtgctgcggcctcacttgcgccagctcctctccgcc
aaggatgcacgtggaatgactccgttcatgctggcagtgagtgggagagcctacccagca
gccatcacggtcctggaagctgctcagaaaatagccaagggcgagtctggcagcggcgat
aaggaagatgcggactctctgttcatggagatgatttgcccgtctggcaccaacccagac
gactcgcccctctacgtgctatgctgcaacgacacctgcagcttcacctggaccggcgcc
gagcacatcaatcaggacatctttgagtgccggacctgtggcctgctagaatctctgtgc
tgctgcacagaatgtgcccgagtctgccacaagggacacgactgcaagctgaagagaacc
tctccaactgcgtactgcgactgctgggagaaatgcaagtgcaagacactgattgctggg
cagaaagctgctcgcctggacctgctctacaggctcctcacaaccaccaacctcgtcact
acccccaacagcaggggggagcacatcctgctgttcctggtgcagacagttgccaggcag
agtgtggaacactgccagtaccggccgccccgcatccgggaggaccgcaatcgcaaagct
gccagcgcagaggactcggacatgccggaccatgacctggaacctccacgcttcgcccag
ctggctctggagcgcgtgctgcaggactggaacgccctcaagtccatgatcatgtttggc
tcccaagagaacaaagacccgctgagtgccagcagcaggattgcccacctcctccctgag
gagcaggtgtacctgaaccagcagagtggcaccatcaggctggactgcttcacccactgc
ctcatcgtcaagtgtgccccggacatcacattcatcgacacgctcctgggcacactggtg
aaggagctgcagaataagtacacccccgggaggagggatgaggcggtgattgtcaccagg
aggttcctgcggtcggtggcccgtgtgtttgtcatcctcagcgtggagatggcctcatcc
aagaagaagaataacttcatcccgcagcccatagggaagtgccgccgtgtgttccaggcc
cttctcccgtacgcgacggaggagctgtgtaacgtggccgagtctcttatcgtgcccgtg
cgcatgggcatcgcccggcccaccgcccccttcacactggccagcaccagcattgatgcc
gtccagggcagcgaggagctcttctctgtggagccgctgccacccaggccctccccagac
caatccagcaactccagtcaagcagcctcctcctacatcatccgcaccccccagccccac
cgcagcagccagtcccagcctgtccgcgggcgggacgaggagcaggacgacatcgtgtcc
gctgatgtagaggaggtggaggttgtggagggtgtcgcaggagaggaggatcaccatgac
gaccaggaggagcagggagaagagaacgcagaggctgagggtcaacacgatgagcatgat
gaggatggaagtgacatggagttggatctcctcgctgctgctgagaccgagagtgacagt
gagagtaaccacagcaaccaggacaatgctagtgggcggagaagcgtcgtcacggcagca
actgctggatctgaagcaggtgccagcagtgtccctgccttcttttcagaggacgactcg
cagtccaacgactcgagcgactcggacagcagcagcagccagagcgacgacgtggaccag
gagacgttcctggtggacgagccgctggagaggaccacgggcatggcgcacgccaacagc
gctgcccaggcgccgcgctccatgcagtgggccgtccgcaccacacccaaccagcggacc
gccgggggcgccccctctagcacctccacccctgcaggtcagagagcgctccctccccaa
ccagcgagctccacgggcctgatctacatcgacccgtccaacctgcgccgcagcagtgcc
atcagcaacagcgcagcggtcgccgccgccgccctggaggccagcaactccagcagctac
ctgacgtccgccagcagcctggcccgcgcctacagcatcgtcatcaggcagatctccgac
ctcatgggcctcatccccaaatacaaccacctggtctactcccagtatcctgcagccgtc
aaactcacctaccaggacgctgtcaacctgcagaacttcgtggaagacaaactgatcccc
acctggaactggatggtgtccatcatggactccacggaggcccagctgcgctacggctca
gcgctgtcctccgcaggggacccaggccatcccagccacccgctgcacgcgtcccaacac
gccggccgccgagagcgcatgaccgcccgtgaggaggccagtctacgcacgctggagggc
cgcagacgggcagccaccctgctaaccgctcgacagggcatgatgtcggcccggggagac
ttcctgaactacgccctgtcgctgatgcgctcacacaacgacgagcactcagacgtgctg
cccgtgctggacgtgtgctcgctcaagcacgtggcctacgttttccaggctctcatctac
tggatcaaggccatgaaccagcagaccacgctggacacaccacagatggaccggaagagg
aatcgagagattctggagctcggtttggacaatgaagattcagagcacgagaacgacgag
gacaccaatcagagttttgcattggaataccaagagggacacaagaggaaggcagttagg
cagaaacacggcaaaaagaagcgggcagctgtgaaaggttctacgctgcaagacaaggat
gacgatccggtccccgctgaaacgggacagaatcactccttcttccggcgctccgattcc
atgaccttcctgggctgcatcccacccaatcccttcgaagtgcccctggccgaggccatc
ccactggccgatcagccccacctgttacagcccaatgccaggaaggaggacctgtttggt
cgccccagccagggcttgtactcgtcctcttacatggccagcaaaggcctggccgacatg
tcagcggatagaaactgcttagagattctgcccactaagatgtcgtactcggccaacatg
aagaacgtgatgagcatggagctgcgtcccagggaggagctcgctgccgcggagcaggag
atggacacctccaagcctggcccctccccccacgacctggctgcccagctcaagagcagc
ctgctggctgagatcggcctgaccgagagcgacggaccccctctaccctccttcagaccc
cactgtagtttcatgggaatggtgatctctcatgacatgctgctgggccgctggcgtctc
tccctggagctgtttggaagagtgttcatggaggacgtgggggctgagccaggatcgatc
ctgacagagctgggtggctttgaggtgaaagagtccaaattccggcgggagatggagaag
ctgcgcaacctgcagtcgcgtgatctggcgcttgaggtggaccgcgaccgcgaccagctc
atccagcagaccatgcggcagctcaacacgcactttggccgccgctgcaccaccacgccc
atggctgtgcaccgtgtcaaggtcaccttcaaggacgagccgggcgaggggagcggtgtg
gcacgcagcttctacacggccattgcccaggccttcctgtccaacgagaagctgcccaac
ctggactgcgtgcagagcgtcagcaagggcatgcaggccagcaatctcatgcagcgactg
aggaacagagatcgagagagggagagaaggagtggggggcttcgagccggctcccggcgg
gatcgcgacagggactccagaaggcagctgtccatcgacacacggcccttcaggcctgcg
tccgaagggaaccccagcgacgagccggacccgctgccggcacacagacaggcactggga
gaacggctgtaccctcgtgtgcacgccatgcaaccggcgtttgccagtaaaatcacaggg
atgctgctagagctgtcccctgctcagctgctgctgctcctggccagtgaggactccctg
agagcccgcgtggaggaggccatggagctcctcattgcacatggaagggaaaatggtgct
gacagcatattggacctcggtgtcctggatgcccctgagaaagcacagcaggagaacagg
aagaggcatggctccacccgcagcgtggtggacatggagctggacgaccctgatgacggg
gacgacaacgcccctctgttctaccagccgggtaaacggggcttctactccccacgacca
ggcaagaacacggaggccagactcaactgcttccgcaacatcggcagaatactaggactt
tgtctgctgcagaatgaactgtgccctattactttgaatagacacgtcatcaaagtcctg
ctcgggagaaaggtgaactggcatgactttgccttctttgacccggtaatgtacgagagc
ttgcggcagctaatcctccactcccaggctggggaggcagaggcggtgttctcagccatg
gatctggcctttgccatcgacctctgtaaagaggaaggcgctggacaggtggagctcttg
actggtggggtgaacatgccggtcacccctttgaatgtttatgagtatgttaggaagtat
gcagaacacaggatgctggtggttgcggagcagcctctgcatgcaatgagaaaggggctc
cttgacgtgcttcccaagaatgccctggaggacctcacggcagaagacttccggctcctg
gtcaatggctgtggagaggtcaatgtgcagatgctcatcagtttcacctcattcaacgat
gaatcgggggaaaatgcggagaaacttttacagttcaagcgctggttttggtccattgtt
gagaagatgagtatgacagaaaggcaggatctggtgtacttctggacctccagtccatct
ttgccggccagtgaggagggcttccagccgatgccctccatcaccatccggcctccagat
gaccagcacctgcccaccgccaacacctgcatctcccgcctctatgtgccactctactcc
tccaaacagattctcaaacagaaactcttactagccatcaagaccaagaacttcggtttt
gtgtag
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integrated database retrieval system
