Clupea harengus (Atlantic herring): 105894959
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Entry
105894959 CDS
T09045
Symbol
pold1
Name
(RefSeq) DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03030
DNA replication
char03410
Base excision repair
char03420
Nucleotide excision repair
char03430
Mismatch repair
char03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
105894959 (pold1)
03410 Base excision repair
105894959 (pold1)
03420 Nucleotide excision repair
105894959 (pold1)
03430 Mismatch repair
105894959 (pold1)
03440 Homologous recombination
105894959 (pold1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
char03032
]
105894959 (pold1)
03400 DNA repair and recombination proteins [BR:
char03400
]
105894959 (pold1)
Enzymes [BR:
char01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
105894959 (pold1)
DNA replication proteins [BR:
char03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
105894959 (pold1)
DNA repair and recombination proteins [BR:
char03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
105894959 (pold1)
MMR (mismatch excision repair)
DNA polymerase delta complex
105894959 (pold1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
POL3_N
REV3_N
DNA_pol_B_2
DNA_pol_B_exo2
divDNApol
Motif
Other DBs
NCBI-GeneID:
105894959
NCBI-ProteinID:
XP_031430575
Ensembl:
ENSCHAG00000004664
UniProt:
A0A6P8G3Y7
LinkDB
All DBs
Position
1:28009288..28021886
Genome browser
AA seq
1104 aa
AA seq
DB search
MDPKKRQNRGSFNGGASQAKRGKSGEDWEDSPSQFEEELAQFDDPDMEAESSEGQAGHDV
IPVADLFSADLNPRWPRPAAPTVNQYTQTLVFQQIDLDYYLGQAVAGMPGQSHGKVPIIR
MFGVTDDGHSVCCHVHGFAPYFYIPAPNGFTRDHLADFQKELNSAVLKDMRGNKDDISVT
VLAVDITRKESMYGYHGNHPLDFLRITMAMPRLIAPAKRLLEQGLSFSIFRTQSYSSYEA
NIDFEIRFMVDCDVVGCCWIELPKGKYRVREEKEPADSRHPGKVSLSQYEVDVGWTDLIS
HPAEGDWQRIAPLRILSFDIECAGRKGVFPEAEVDPVIQIASMVQRQGEKEPFIRTVFTL
QSCASIVGSQILCFTQEKNMLQRWAEFVRAVDPDIITGYNIQNFDFPYLLNRAAALKVHL
FPYLGRMRGIKSVMKDSSFQSKQMGRRENKTINMEGRVQFDLFQVLLRDYKLRSYTLNAV
SFHFLQEQKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLLQKLMCVINYMEMAR
VTGVPLTYLLSRGQQIKVVSQLLRQAMKQNLVMPVLKVEGGEDYTGATVIEPEKGYYNIP
IVTLDFSSLYPSIMMAHNLCYTTLLPKGQADKLGLSPEDFIKTPTGDSFVKHSVRKGLLP
EILENLLGARKRAKAELKKETDPFKKQVLDGRQLALKISANSVYGFTGAQVGKLPCLEIS
QSVTGFGRQMIERTKQLVESKFTMANGYQADAKVIYGDTDSVMVKMGVATVKEAMEVGRE
AAEWVSSHFVQPIKLEFEKVYYPYLLINKKRYAGLYFSGSAEQYEKMDCKGIETVRRDNC
PLVANLINTCLQKLLIDRDPDGAVTHAKEVISDLLCNRIDISQLVITKELTRTAQEYSAK
QAHVVLAERMRKRDAGSAPNLGDRVPYVIIQATKGVAAYMKSEDPIYVLENNIPIDTQYY
LEQQLSKPLLRIFEPILGESKAESVLLKGEHTRCKTVLTSKVGGLMAFAQKRSTCIGCRA
VLKGDAAVCDFCKKRESELYQKEISHLSTLEERFSRLWTQCQRCQGSLHEDVLCTSRDCP
IFYMRKKVQKDLDDHQKLVSRFGW
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atggacccaaaaaagagacaaaacagaggctccttcaatggcggggcctcgcaggccaaa
cgtgggaagtcaggggaagactgggaggacagcccgtctcagtttgaggaagagttggcc
cagtttgatgaccctgacatggaggctgagtcaagcgaggggcaagcaggccatgatgtc
atacctgtggctgacctgttttcagctgatctgaatcccagatggcccagaccagccgct
ccaaccgtaaaccagtacacccagaccctcgtcttccagcagatcgacctggattattat
ctgggccaagcagtagcaggtatgcctggtcagtctcatgggaaggttccaattatccgc
atgttcggagtgacggacgatgggcacagcgtgtgctgccacgtgcacggattcgcccct
tacttctacatccctgcccctaacggttttacccgtgatcacctcgctgacttccagaag
gagttgaactcggctgtgttgaaggacatgcgcggcaacaaagacgacatatcggtcact
gtgctggctgtggacatcacccgcaaagagagtatgtatggataccatggtaaccatcct
ctggacttcctgcggatcaccatggcgatgccacgcctgattgccccggcgaagcgtctg
ctggagcagggcttaagttttagcatcttccgcacgcagtcctactcctcctatgaggcc
aacatcgactttgagatcaggttcatggtggactgtgacgtggtgggttgctgctggatt
gaactgcctaaagggaagtaccgtgtgagagaggagaaggaacctgcagactctaggcac
ccaggcaaggtgtctctgagtcagtacgaggtggatgtaggatggacagatctgattagt
cacccagcggagggggactggcagaggatcgctccgctccgaatcctcagctttgatatt
gagtgtgccgggaggaaaggtgtctttccggaggcggaggtggacccggtcatccagatc
gcctccatggtgcagcgtcagggagagaaggagcccttcatccgcaccgtcttcaccctg
cagagctgcgccagcatagtgggctcccagatcctctgtttcactcaggagaagaacatg
ctacagcgatgggctgagtttgtgagagctgtggacccagatatcatcacaggctacaac
attcagaactttgacttcccctacctcctcaacagagctgctgccctcaaggtgcacctg
ttcccctatcttggccggatgaggggcattaagtctgtgatgaaggactccagcttccag
agcaagcagatgggccgcagggagaacaaaactatcaacatggagggcagggttcagttt
gacctgttccaggttctgctgcgggattataaactacgctcgtacactctcaatgctgtc
agctttcacttcctgcaagagcagaaggaggacgtgcagcattccatcatcactgaccta
cagaatgggaatgagcagacgcggcgccggctggcggtgtactgtctgaaggacgcctac
ctgccgctgcgcttgctgcagaagctcatgtgtgtcatcaactacatggagatggccaga
gtcaccggggtcccgctcacctacctgctctcccgcggacagcagatcaaagtcgtgtct
cagctcctcagacaggccatgaaacagaacctggtgatgcctgtgctgaaggttgaaggt
ggagaggactacactggggctactgtcatagagccagaaaaagggtattacaatatccct
atagtcacactggatttctcttctctgtatccatccatcatgatggcccacaacctttgt
tacactacattactaccgaaggggcaagctgacaaactcggtctctctcctgaagacttc
attaaaactcccactggtgactcgtttgtgaagcactccgtgaggaagggcctactgcca
gaaatcctggaaaacctgctcggtgccagaaagagggcaaaggctgagctgaagaaagag
accgacccattcaagaaacaggttctggatggcaggcagttggcattgaagatcagtgcc
aactccgtgtacggcttcactggtgcccaggtgggcaaactgccctgccttgagatctca
cagagtgtgaccggctttggcaggcagatgattgaacggactaaacagcttgttgagtcc
aagtttaccatggccaacggttaccaggctgatgccaaggtcatttatggggatacagat
tctgtgatggtgaaaatgggcgtggctaccgtgaaggaagcgatggaggtgggcagggag
gctgctgagtgggtgtcatcacacttcgtccaaccaatcaaactggaattcgagaaggtg
tactacccgtacctgttgattaataagaagcgttacgctggcctgtacttctccggcagt
gcggagcagtatgaaaagatggactgtaagggtatagagacggtccgcagagacaactgc
cccctggtggccaacctcatcaacacctgcctccagaaactccttattgacagggaccct
gatggagctgtgacccacgctaaagaggtgatctcagacctgctgtgcaacaggatagac
atcagccagctggtcatcaccaaggagctcacgcgcacagcacaggagtactccgcgaaa
caggcacacgttgtgctcgcagagaggatgcgtaagcgtgacgccggcagtgctcctaac
ctgggggatagagttccatacgtcatcattcaagctaccaagggagttgcagcctatatg
aagtctgaggatcccatctatgtgctggagaataacatccccatagacacacagtactac
ctggaacagcagctttccaagccccttctcaggatctttgagcccatactgggggagagc
aaggccgagagcgtgcttctgaagggagaacacactcgctgtaagacagtgttgacctcc
aaggtgggtgggctcatggcgttcgcccagaagaggagcacctgtatcggctgccgagcg
gtgctcaagggcgacgcggctgtttgtgatttctgcaagaagagggagtctgaattatac
caaaaagagatctcacacctgtcgacgctggaggagcgcttctctcgtctgtggactcag
tgccagcgctgtcagggctccctgcatgaggatgtgctctgcaccagtcgagactgcccc
attttctacatgaggaagaaagtgcagaaggacctggatgatcaccagaagcttgtctct
cgttttgggtggtga
DBGET
integrated database retrieval system
