KEGG   Clupea harengus (Atlantic herring): 105895048
Entry
105895048         CDS       T09045                                 
Symbol
si:dkey-110c1.10
Name
(RefSeq) unconventional myosin-Vb
  KO
K10357  myosin V
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char04814  Motor proteins
Brite
KEGG Orthology (KO) [BR:char00001]
 09140 Cellular Processes
  09142 Cell motility
   04814 Motor proteins
    105895048 (si:dkey-110c1.10)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:char03019]
    105895048 (si:dkey-110c1.10)
   04131 Membrane trafficking [BR:char04131]
    105895048 (si:dkey-110c1.10)
   03029 Mitochondrial biogenesis [BR:char03029]
    105895048 (si:dkey-110c1.10)
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:char04812]
    105895048 (si:dkey-110c1.10)
Messenger RNA biogenesis [BR:char03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Factors involved in mRNA localization
    Cargo complex
     105895048 (si:dkey-110c1.10)
   mRNA cycle factors
    P-body specific factors
     105895048 (si:dkey-110c1.10)
Membrane trafficking [BR:char04131]
 Others
  Actin-binding proteins
   Myosins
    105895048 (si:dkey-110c1.10)
Mitochondrial biogenesis [BR:char03029]
 Mitochondrial quality control factors
  Mitochondrial dynamics
   Retention of mitochondria
    105895048 (si:dkey-110c1.10)
Cytoskeleton proteins [BR:char04812]
 Eukaryotic cytoskeleton proteins
  Actin filaments / Microfilaments
   Actin-binding proteins
    Myosins
     105895048 (si:dkey-110c1.10)
SSDB
Motif
Pfam: Myosin_head DIL IQ nSTAND3 AAA_22 NPHP3_N zf-C4H2
Other DBs
NCBI-GeneID: 105895048
NCBI-ProteinID: XP_031430113
UniProt: A0A6P8FPM4
LinkDB
Position
10:22557919..22577706
AA seq 1592 aa
MYEQSYTPAPKNSKSPLSVPCITCNETWPGLFSGIVLVAINPYEQLPIYGEEVIDAYSGQ
DMADMEPHIFSVAEEAYRTMTREEKNQSIIISGESGAGKTVSAKFTMRYFAVVGGASQQT
SVEERVLASNPIMEAIGNAKTTRNDNSSRFGKYIEIGFGRKGDIIGANMRTYLLEKSRVV
FQAPMERNYHIFYQLCASKDLPEMKALKLEAAEYFRYTNQGEETQIPGTDDIVELERTRN
AFTILGVQSDQQMELFRILAAVLHLGNINIQASGRGGDRSYIDTDDRSLRLFAKLLGVEG
AQMAHWLCHRRLAVGGEMLVKPMPGQQAVGARDALAKHIYGQLFSWTVQRLNAGLRAQRE
RPKSFIGVLDIYGFETFDRNSFEQFCINYANEKLQQQFNRHVFHLEQEEYVREELPWSRI
EFSDNQPCIDLIEGSLGLLDLLDEECRMPKGSDESWARKLYDQHTTRSAHFRKPRMSNTA
FIILHFADTVQYECDGFLGKNRDTVFEEPINIMRASQSELVAELFQQDSPGGAVALSVPN
GSLRSGKRTHREHKLTVGFQFRQSLQLLMDTLNSTTPHYVRCIKPNDVKQPFVFDPKRAV
QQLRACGVLETIRISAAGYPSRWTYEEFISRYRVLLWGSLSPGEVRGSCQRALSQLIPDP
EQYCCGKTKVFFRAGQVAVLEKLRAERLHAAGVIIQSWVRGWLGRRRFLRLRWATLTLQR
YARGGLARRLAQTLRYTRAALLIQKTYRMVMVRQLYLMIREATITIQAYTRGTLVRKNYR
KLLEERSAVCLQAAVRGWLQRRAFGRVRAAVVLLQCCVRRRLARRELQKLRAEARSVEKL
GELNKGMEVKLMMLQLRADHQARESGSLRETLQAEREAHSSEVEQLRSALHLLETTLQEE
PKRSRKISEREEEERRKMEERSANEVLQLTQELEALKTERDGLLKDKEDLSAHVLEQEKE
QADCMQKAVCETVESVQAELEEERRRYQGLLREFTRLEQRYDNLRDMSLLTERPREHRRT
DSTQSVVSLLEPLSPGTPSFTGTPSFPSPEEVRRVSVTSPAFEKRPFSPDGPLNVLMEEV
GVAKDAADKMQGEDLRHAYDAVRVANKFLENQLLTQHWQWEEELAALRLQVEGSERVRVP
SETATSADLQELLEQVEVRELECCRLRKELTDLRGVASLRRILALTGPAASSSALQAPVT
PQRRGGSAAGLLECRKKDEAKLIKNLITDVRVDSALSLPLGLAAQVLFLCVQQADCSGDQ
TRARSLCAAAVAGIKAALKKHCTDLDMTALWLKNTCLLADLLIQHSSKQDPGPCEDLLPL
AFDVSETSRALSDLRIKAYQQLLAITESRLQSIIVPAMLESETIPGLSGSASKLASSRKR
AGSDPRAPGSEAPTMVQVLRELGALHAALTHQELPLALQEQALRQLSHLLTASALNSLLL
RKDMCCWNRGLQIRYNVSLLEEWLRSRGLQTGGAVATLEPLIQAAQLLQMSKKSESDAAA
LVQTCKVLSTQQIVKILTLYSPQSDAEERVTLNFIRIVQGLLRERSDGQPPQLLLDVRRV
FPVTFPHQPPPPQRAEQLAIPESLKISFLRKA
NT seq 4779 nt   +upstreamnt  +downstreamnt
atgtatgagcagagttacacccccgccccaaagaacagcaaaagccctctatctgtgccc
tgcatcacttgcaatgaaacctggcctggcttattttcaggaattgtattggtggccata
aacccatatgaacagttacccatatacggagaggaggtgatagacgcctatagtgggcag
gacatggcagacatggagccccatatattctctgtggctgaggaggcctaccgcaccatg
actagggaggaaaagaatcagtccattatcataagtggcgaatctggcgcggggaagacc
gtctctgccaagttcaccatgcgctacttcgctgtggtggggggcgcctctcaacagacc
agcgtggaggagcgagtcctggcgtccaaccccattatggaggctatcggcaatgccaaa
acaacacggaatgacaacagcagccggtttgggaagtacatcgagatcggatttggacgc
aagggtgacatcatcggagctaacatgaggacgtatttattggagaaatctcgagttgtt
ttccaggctcctatggagaggaactatcacatcttctaccagctgtgtgcctccaaagac
ctgcctgagatgaaagcactcaaactggaggcagctgagtacttcagatataccaaccaa
ggggaagagacccagattcccggcacagatgatattgttgaactagagcgcacccgtaat
gccttcaccatactgggtgtgcagtcagaccagcaaatggaattgttccggatactagca
gccgtgttgcacctcggaaacatcaacattcaggccagtggcagaggaggagaccggagc
tacattgatacggacgaccgctcgctgaggctgtttgccaagctgctgggagtggaggga
gcgcagatggcccactggctgtgccaccggcggctggcggtgggcggcgagatgctggtg
aagcctatgccgggccagcaggccgtgggggcgcgggacgctctggccaagcacatctac
ggccagctcttcagctggaccgtgcagaggctcaacgccggcctgcgcgcacagagggag
cggcccaagtccttcattggagtcctggacatctacggatttgaaacatttgacaggaac
agctttgaacagttctgcattaattacgccaatgagaaactgcagcagcagtttaacaga
catgtattccacctggagcaggaggagtatgtgagagaggagctgccctggagccgcatc
gagttcagcgacaaccagccctgcatcgacctgatcgagggctcgctgggcctgctggac
ctgctggatgaagagtgcagaatgcctaagggctcagacgaaagctgggcgaggaagctg
tatgaccagcataccacccgaagtgcccacttccgaaagccccgcatgtcaaacacggcc
ttcatcattctgcactttgctgacacggttcagtatgaatgtgatgggtttttaggcaag
aaccgtgacacagtatttgaagagcccatcaatatcatgagagcaagtcagtcagagctc
gttgctgagttgttccaacaggactcaccagggggcgctgtggcgctgtcggtgcccaat
gggagcctgcgctctggcaagagaactcacagggaacacaagctgacagtgggatttcag
ttccgtcagtctctccagcttctgatggacactctgaacagcaccacccctcattatgtc
cgctgtataaaacccaacgacgtcaaacagccatttgtctttgaccccaagagggcggtc
caacagctgcgagcgtgtggagttctggagaccatacggatcagcgccgcaggatacccg
tcaagatggacctatgaggagtttatcagtcggtaccgggtgctgctatggggttctctg
agtcccggggaggtccgaggcagctgtcagcgggccctgtcacagctcatcccagacccc
gagcagtactgctgtggcaagaccaaggtgttcttccgagcgggccaggtggcggtgctg
gagaagctgcgggccgagaggctgcacgccgccggggtgatcatccagagctgggtgcgg
ggctggctgggacgccgccgcttcctacgcctccgctgggccacgctcaccctgcagaga
tacgcccgcggaggcctggccagacggctggctcaaactctccgttacacgcgagcggca
ctgctcattcagaagacgtaccgtatggtgatggtgcggcagctttatctgatgatacga
gaggctaccatcaccatccaggcttacaccaggggcacgctggtgcgcaagaactacaga
aagctgctcgaggagcgttcggcggtgtgtctgcaggctgccgtgcgtggctggttgcag
cgccgggcctttgggcgcgttcgggccgccgtggtgctgctgcagtgttgcgtgcgcagg
cgcctggcccgcagggagctgcagaagctgcgggcggaggcacgctcggtggagaagttg
ggcgagctcaacaagggcatggaggtcaagctgatgatgctgcagctccgcgccgaccac
caggccagggagagtggcagcctgagggagactctgcaggcggagcgtgaggcccactcc
tctgaggtggagcagctccgctccgccctgcacctcctggagaccacgctgcaggaggag
cccaagaggagccgcaagatctccgagagagaggaggaggagaggaggaagatggaggag
agatcagccaacgaggtccttcaactcacacaggagctagaagctcttaagacggagaga
gacggtctgctgaaggacaaagaggatctctccgcacatgtactagagcaggagaaagag
caggcagactgcatgcagaaggcagtgtgtgagacagtggagagcgttcaggcggagctg
gaggaggagcgtcggcgctaccagggcctgctgagagagttcacccgtctggagcagaga
tacgacaacctgagagacatgagcctgctcacggagcgcccgcgggaacaccgacggacc
gactcgactcagagcgtggtgtcactcctggagcccctctcccccgggaccccctccttc
accggcaccccctccttcccgtcgcccgaggaggtgcgcagggtgagcgtcacctcgccc
gctttcgaaaagagacctttcagccccgacggccccctgaacgtgttgatggaggaggtg
ggggtggcgaaagacgctgctgataaaatgcaaggcgaagatctcaggcatgcctatgat
gctgtacgtgtggccaacaaattcctggagaaccagctgttgacccagcactggcagtgg
gaggaggagctggctgccctgcgactgcaggtcgaggggtcagagagggtccgagtcccg
tctgagaccgctaccagtgcagacctgcaggagctcttggagcaggtggaggttagagag
ctggagtgctgtcgtctgaggaaggagctgacagatctgaggggtgtggcgtctctgagg
aggattcttgctctcacaggcccggctgcgagctcttcagctctccaggccccagtcacc
cctcagaggagagggggaagcgctgcaggcctgctggagtgcaggaagaaggacgaggcc
aagctcatcaagaacctcatcacagacgtgcgtgtggacagcgccctgtccctgccgctg
ggcctggctgcgcaggtgctgttcctgtgtgtgcagcaggccgactgcagcggggaccag
acgcgggcacgctccctctgtgccgccgctgtcgccggcatcaaggctgcgctcaagaag
cattgtactgatctggatatgacagcactgtggctgaaaaatacctgcttactcgcagac
cttcttatacagcattcatcaaagcaggatcccggcccctgtgaggacctcctgcctctg
gcgtttgatgtgagcgagacgagtcgagcgctgagcgacctgcgcatcaaggcgtaccag
cagctgctggccatcaccgagagccggcttcagtccattatcgtcccggccatgctggag
agtgagaccatcccggggctgtccggatcagccagtaagctggccagctcccgtaagcgg
gccggttctgacccgcgggctccgggctcggaggcccccacgatggtgcaggtgctgcgc
gagctgggcgccctgcacgccgccctcacccaccaggagctgcccctggcactgcaggaa
caggccctccgccagctcagccatctgctgaccgccagcgccctcaacagcctgctgctg
cgcaaggacatgtgctgctggaaccgcggcctgcagatcaggtacaacgtgagcttgctg
gaggagtggctgcggagccgtgggctgcagacagggggcgccgtggccacactggagcca
ctgatccaggctgcccagctcttgcaaatgagcaagaagtcagagtccgacgcagcggca
ctggtccagacttgcaaagtgctatcgactcaacagattgtcaagattttaaccctctac
agcccacaaagtgatgcagaggagagggtcacacttaatttcattcgtattgtacagggt
ctgctgagggagcgttctgacggccagcccccgcagctgctgctggatgtgcgcagggtc
ttccctgtcaccttcccccaccagccgcccccgccccagcgcgcagagcagctggccatc
cccgagtccctcaagatctccttcctccgcaaggcctga

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