Clupea harengus (Atlantic herring): 105895070
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Entry
105895070 CDS
T09045
Symbol
pdgfra
Name
(RefSeq) platelet-derived growth factor receptor alpha isoform X1
KO
K04363
platelet-derived growth factor receptor alpha [EC:
2.7.10.1
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04010
MAPK signaling pathway
char04020
Calcium signaling pathway
char04144
Endocytosis
char04510
Focal adhesion
char04540
Gap junction
char04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
105895070 (pdgfra)
04020 Calcium signaling pathway
105895070 (pdgfra)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
105895070 (pdgfra)
09144 Cellular community - eukaryotes
04510 Focal adhesion
105895070 (pdgfra)
04540 Gap junction
105895070 (pdgfra)
09142 Cell motility
04810 Regulation of actin cytoskeleton
105895070 (pdgfra)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
char01001
]
105895070 (pdgfra)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
char04090
]
105895070 (pdgfra)
Enzymes [BR:
char01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
105895070 (pdgfra)
Protein kinases [BR:
char01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
105895070 (pdgfra)
CD molecules [BR:
char04090
]
Proteins
105895070 (pdgfra)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Ig_PDGFR_d4
Pkinase
Ig_3
I-set
ig
Ig_2
V-set
VEGFR-1-like_Ig-like
VEGFR1-3_N_Ig-like
Kinase-like
Haspin_kinase
Motif
Other DBs
NCBI-GeneID:
105895070
NCBI-ProteinID:
XP_012677089
Ensembl:
ENSCHAG00000001576
UniProt:
A0A6P3VP24
LinkDB
All DBs
Position
10:22031497..22059607
Genome browser
AA seq
1475 aa
AA seq
DB search
MGGFKTHLTLLAVLISILPARSDPPTIVSNQDEFVVGVHSRFNISCTGKREVVWAEPLPD
NVYAFPGYYTATLLIGDAEASHTGYYSCVYASKNGEPVVHEDTEDEDMSEIYIFVPDPDV
PFVPEENTEVETDPLGNIIPCRVTDPRSHVMLKTLPSDIELQGLYDHRNGFLGNFSAGNF
VCETFVNGETRRSDVYTVIEKKQPVVKQDFQVTLKASDEAVMAREAFNLTCIAPLGPEYQ
QQWLHPLKQAVDAIQMKQTLPDKVLYVLSIPSASAHDGGSYECAVTNTILRQTRSSQVAV
TVHEEKSFVSLDHRGIGGVEDITLLEDTEFTIYIDAHPEPKMMWKKDGRPLDKSTFLYAM
NSHVLGNRYQSILNLKHPTEEDGGKYTFIATSGQQLAHFSFELRVKEPSAVLFQSAQAPL
LLPQSDQLVVTLGSSFRLTCRGVAELVWSAPSDLSEQTLDDKGGLFVSTVTVENSTVLNT
GEYLCGYKGSNYTDEDDGSIIYIYVPDPDVPFVPSMDPSYIHVMTDHDEMEIPCRASDPT
SNVSLVNVETQQVVDAEYDSKRGFIGMFNAGTYICKALVGGQEHLSEEYIVHGWAGGSDL
HVELLAKRTALLVGDTLTVNCVAKGSEMLEDHWKYPGKMFGRGEKTVRENRREMTINYTL
RMSDVSLKDSGIYACSITDIMSNESQTKELTVTVYESPFVSLVPAFAHTELAELDEVREF
KADIEAFPGVKVVWQKDGVAIGDNGAEMTTSFHEISETKFQTVLTLIRAKAEDSGNYTVR
AHTSNQSSSFSFSLQVKVPAVIVEMMDLHHGSVTGQAVVCIAEGEPLPEVEWYICKNIKH
CANDSTQWSLLPANSTEITVDTHINEDVQLESQVIFGHLENTLAVRCLARNDMAAVTREV
KLVSSGPHSELTVAAAVLVLLVIVIISLIVLVIIWKQKPRYEIRWRVIESVSPDGHEYIY
VDPMQLPYDSRWEFPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTAR
SSEKQALMSELKIMTHLGPHLNIVNLLAACTKSGPIYIITEYCIYGDLVNYLHKNRDTFM
SRHPEKSKKDLDIFGINPTDESSRSYVILSFEGKGDYMDMKQADTTQYVPMLEMNQASKY
SDLQGSDYDHPHSHKQHDGEGESLLSDDTSEGLSTMDLLSFTYQVARGMEFLSSKNCVHR
DLAARNVLLSQGKIVKICDFGLARDIMHDNNYVSKGSTFLPVKWMAPESIFDNMYTTLSD
VWSYGILLWEIFSLGGTPYPGMVVDSSFYNKIKSGYRMAKPEHATDDVYEMMSKCWNSEP
EKRPTFLSLSETVASLLPGGYKRSFERMNNDFLKSDHPAVTRVQRMGDDDDEEAYIGVTY
KNQGKLKDRESGFDEQRLSSDSGYIIPLPDLDPMSDEEYSKRNRHSSQTSDESAIETGSS
ISTLAKRMEGETLEDITLLDEMCLDSSDMVEDSFL
NT seq
4428 nt
NT seq
+upstream
nt +downstream
nt
atggggggtttcaagacccatctaactcttttggctgtattaatcagtatactaccagcc
cggagtgatcccccgaccatagtttcgaaccaagatgagtttgttgtcggtgtgcactca
aggttcaacatcagttgtacggggaaaagggaggttgtatgggccgaacctttacccgac
aacgtttacgcttttcccggctactacactgcaacgctgctaattggtgacgcggaagcc
tcccataccggatactactcatgtgtttatgcatcaaaaaacggcgaaccggtagtgcac
gaggacacagaggatgaagacatgtcggaaatatacatatttgtgccagatcccgatgtt
cccttcgtacccgaggagaatactgaagtggagaccgacccattgggcaacatcattcct
tgtcgcgtcactgatccccgatctcatgtcatgcttaaaaccttgccaagtgacattgaa
ctgcagggattgtatgaccacaggaatggcttccttggtaacttttcagccggaaatttc
gtgtgtgagacctttgtcaacggcgagacaaggagaagcgacgtctacactgtcattgaa
aagaaacagccggtggtgaagcaagacttccaggtgacgctgaaagccagcgacgaggca
gtgatggccagggaagcctttaacctcacctgcatcgccccgctggggcccgagtaccag
cagcagtggctccatcccctaaaacaggccgtggatgctattcagatgaaacagactctt
ccggataaggtgctttacgtcctcagcatcccctcggcctcggcccacgacggcggctcg
tacgagtgtgccgtcaccaacaccatcctcagacagaccaggagcagccaggtggctgtc
accgtccatgaggaaaagtcttttgtgtctctggatcaccgtggcatcggtggagtggag
gacatcactcttctggaggacactgagttcaccatctacatcgatgcccacccagagccc
aagatgatgtggaagaaagatggcaggcctctggataagagcactttcctctacgccatg
aacagccatgttctgggaaaccggtatcagagcattttaaatctgaaacaccctacggag
gaggacggtgggaagtacaccttcatcgccaccagtggccaacagctcgcccacttctct
tttgaactcagagtcaaagagcccagtgctgtgctgttccagtcggcccaggctcctctc
ctgttgccccagagtgaccagctggtggtgaccctcggctcctccttcagactcacctgc
aggggcgtggccgagctggtctggagcgccccctccgacctttcagagcagaccctggat
gacaagggcgggctgttcgtcagcacggtaaccgtggagaactccacggtcctaaacact
ggggagtacctctgtggctacaagggatccaattacacagacgaggacgacggaagcatc
atctacatctatgtgccagatccagacgtgccttttgttccctccatggacccgtcgtac
atccacgtgatgacggaccacgacgagatggagatcccgtgccgcgcgtcggaccccacc
tccaacgtctccctggtcaacgtggagacgcagcaggtggtggacgccgagtacgacagc
aagagaggcttcataggcatgttcaacgcgggcacctacatctgcaaagcgctcgtcggt
ggacaagagcacctcagcgaggagtacattgtccacggatgggcaggtggctctgacctg
cacgtggagctgctggccaagaggaccgctctactggtgggagacacactcacagtcaac
tgtgtggccaagggcagcgagatgctggaggaccactggaaataccctggcaaaatgttt
ggccgcggtgagaagacggtgagagagaaccggagagagatgaccatcaactacaccctg
cggatgtccgacgtctcgctgaaggacagcggtatctacgcctgctccatcaccgacatc
atgagcaacgagagccagaccaaggagctgaccgtcacggtctatgagagcccctttgtc
tcgctagtcccagccttcgctcacactgagctggctgaactggatgaggttcgggagttc
aaggctgacatcgaagctttccccggcgtcaaagttgtctggcaaaaagatggggttgcc
atcggcgataacggcgcagagatgaccactagtttccatgagatcagtgagacaaaattc
cagacggttctgaccctgatccgcgcgaaggccgaggacagtgggaactacaccgtcagg
gcccacaccagcaaccagagcagcagcttcagcttctccctgcaggtcaaagtccctgcg
gtgattgtggagatgatggacctccaccatggctctgtcacgggtcaggccgtggtgtgc
atcgctgagggggagcctctgccagaggtggagtggtacatctgtaagaacatcaaacac
tgtgccaatgactccacccagtggagcctgctacctgccaactccactgagatcaccgtg
gacacgcacatcaacgaggacgtgcagctggagagtcaggtgatcttcggtcatctggag
aacacgctggcagtccgctgcctggccaggaacgacatggccgcagtcaccagagaggtc
aagctggtgtccagcggtcctcactcggagctgaccgtggcagctgctgtgctggtgctg
ctggtcattgtcatcatctcactcattgtgctggtcattatttggaaacagaagccacgc
tatgagatccggtggcgggtgatcgagtcggtcagtccagacggacacgagtacatctac
gtggaccccatgcagcttccctacgactcccgctgggagttccctcgcgacggcttggtt
ctgggtcgtattctgggctctggggccttcgggaaggtggtggagggcaccgcctacggg
ctcagccgctcccagcctgtcatgaaggtggctgtgaagatgctcaaacccacggcgcgc
tccagcgagaagcaggcgctcatgtctgagctgaagatcatgacacacctgggccctcac
ctcaatatcgtcaacctgctcgcagcctgcaccaaatcagggcccatctacatcattact
gagtactgcatctacggtgacctggtcaactacctgcacaagaaccgcgacaccttcatg
agccgccacccagagaagagcaagaaggatctggacatctttggcatcaaccccaccgac
gagagcagcagaagttatgtgatcttgtcctttgagggcaaaggggactacatggacatg
aagcaggccgacaccacgcagtatgtgcccatgctggagatgaaccaagcctccaagtac
tcggacctccagggctccgactacgaccacccacactcccacaagcaacacgacggcgag
ggagagagcctgctctcggatgacactagtgagggcctcagcaccatggaccttctcagc
ttcacgtaccaggtggcccgaggcatggagttcctgtcctccaagaactgtgtgcatcgg
gacctggccgccaggaatgtgctgctttctcaagggaagatcgtcaagatctgcgacttc
ggcctcgccagggacatcatgcacgacaacaactatgtctcaaaaggaagcacgttcctg
cctgttaagtggatggcccctgagagcatctttgacaacatgtacacaacccttagtgac
gtctggtcctacggcatcctactgtgggaaatcttctccctcggaggaaccccttaccca
ggcatggtggtcgactcaagcttctacaacaagatcaagagcggctacagaatggccaag
cctgaacatgcgaccgatgacgtgtatgagatgatgtcaaagtgttggaacagtgagccg
gagaagaggcctaccttcctcagcctgagcgagactgtggcctctctactgcctggaggg
tacaagaggagctttgagcggatgaacaacgacttcctcaagagtgaccacccggccgtg
acccgcgtgcagcgcatgggcgacgacgacgacgaagaggcgtacatcggcgtcacctac
aagaaccagggcaagctgaaggaccgcgagagcggcttcgacgagcagcgcctcagctcg
gacagcggttacatcatccccctccccgacctggaccccatgtccgacgaagagtacagc
aaaaggaaccgccacagctctcagacatcagacgagagcgccatcgagaccggctccagc
atctccaccttggccaagcggatggagggggagacgctggaggacatcactctgctggac
gagatgtgccttgactccagcgacatggtggaggacagcttcctgtga
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integrated database retrieval system
