Clupea harengus (Atlantic herring): 105895081
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Entry
105895081 CDS
T09045
Symbol
sh3rf1
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase SH3RF1
KO
K12171
E3 ubiquitin-protein ligase SH3RF [EC:
2.3.2.27
]
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
char01009
]
105895081 (sh3rf1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
105895081 (sh3rf1)
Enzymes [BR:
char01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105895081 (sh3rf1)
Protein phosphatases and associated proteins [BR:
char01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
105895081 (sh3rf1)
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
105895081 (sh3rf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH3_9
SH3_1
SH3_2
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
zf-RING_4
zf-RING_11
Prok-RING_4
zf-Nse
Motif
Other DBs
NCBI-GeneID:
105895081
NCBI-ProteinID:
XP_031430224
Ensembl:
ENSCHAG00000023224
UniProt:
A0A6P8FU80
LinkDB
All DBs
Position
10:21073311..21124334
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AA seq
898 aa
AA seq
DB search
MDESALLDLLECPVCLERLDATAKVLPCQHTFCRRCLLGIVGSRGELRCPECRTLVESGV
DELPSNILLVRLLDGIKQRPRRPGPGAGAGGGGGAAGAGTGVCTTNGIAGALVRAQATAA
QREPGVPGAQPQRVQAKSTPVRGIPQLPCAKALYNYDGKEPGDLKFSKGDIIILRRQVDE
NWYHGEMGGVHGFFPTNFVQVVKPLPQPPPQCKALYDFELKDKEADKDCLPFSKDDVLTV
IRRVDENWAEGMLGDKIGIFPISYVEFNTAARQLIELDKPSDGSGDSAGEGPSSSSSSSS
SSSSSSAAPGFPQANGTQKPGGEKKNTKKRHSFTSLTMSHKPCLAPPPQRHSMEISGPVL
ISSSNPTAAARIGELSGGLSSSAPSQVHICTAGLIVTPPPSSPVTTATVFTFPPETSYAS
IPVDALPPPPPPPPQSSAAGATSSLAAGQRPSPTINDQSSRQRPTVYVAMFPYTPRKDDE
LELRKGEMFLVLERCQDGWFKGTSMHTGKMGVFPGNYMSPVSRTVSGGSQPKVPLTLCTQ
AGRGVTIVSPSTAPLGCVEHPKVLTTCPGAAPPSPLPAAVVTTAHMPPGTAKVLMHVTSQ
MTVNQARNAVRTAACHNQDRPTASVTPILPQQAVAFLPHLAVCPQPLPAAVGGAPPSCSR
TAVSLGCAAASLTPPNVSAASLDADALRAVTVLAVPLAPGSAVSLGAAMPSAAAANQALA
CRMDKDGKREKKGLLKLLSNKKKLRPSPPSSPTLEAEQSVAMEMALGAAGSDMAACTAGA
NGGRCASAXQAELDPSPSAFGALDSSHRKSASHEGPVPIAPPPRQPCSSLHALHDSRPIV
CERYRVVVSYPPQSEAELELKEGDIVFVHRKREDGWFKGTLQRNGRTGLFPGSFVDII
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atggatgagtctgcattgctggacctgttggagtgccccgtgtgtctggagcgtctggat
gccacggccaaggtgctcccatgccagcacaccttctgcaggcgctgcctgctgggcatc
gtgggctcacgtggggagctgcgctgcccggagtgccgcacgctggtggagagtggcgtg
gacgagctgcccagcaacatcctgctggtgcgtctgctggatggcatcaagcagaggccc
cgacggccaggcccaggagctggagctggaggaggaggaggcgcagcaggagcaggcaca
ggggtctgcactactaacggcatcgccggggcgctggtcagagcacaggcaacggcagcc
cagagagaaccaggagtcccaggagcacagccccagagggtgcaggccaagagtacccct
gtcaggggcattccccagctcccctgtgccaaggccctctacaactatgacggcaaggag
cccggcgacctcaagttcagcaagggtgacatcatcatcctgcgccggcaggtggatgag
aactggtaccacggggagatgggcggagtccacggcttcttccccaccaacttcgtgcag
gtcgtcaagcccctccctcagcccccgccccagtgcaaggcgctctacgactttgagctc
aaggacaaggaggccgacaaagactgcctgcccttttcaaaggatgatgttttgactgtg
attcgccgtgtggatgagaactgggctgaagggatgctgggagataagatcgggatcttt
cccatctcttatgtggagttcaacactgctgcgcggcagcttattgagctagacaagccc
tcggacgggagcggggattcggcgggcgagggcccctcctcttcctcttcctcctcctcc
tcttcgtcgtcctcctctgccgccccgggcttccctcaggccaacggcacgcagaagccc
ggcggcgagaagaagaacaccaagaagcggcactcgttcacctcgctcaccatgtcccat
aagccctgcctggcaccgcccccacagcgccactccatggagatcagcgggcccgtgctc
atcagctccagcaaccccaccgccgccgcccgcatcggagagctcagcggaggcctctcg
tccagcgccccctcccaggtacacatctgcaccgccggcctcatcgtcacccctcccccc
agcagtccagtcaccacggcgacggtgttcacattccccccggagacgagctacgcgtct
atcccagtggatgcgttgccgccccctccacctccacccccacagtcctcagctgcaggc
gccacatcctcattggctgcaggacagagaccttcccccaccataaacgaccagagcagc
agacagcggcctactgtgtatgtggcgatgttcccgtacaccccacggaaagatgacgaa
ctggagctgaggaagggcgagatgttcctggttctggagcgctgtcaggacggctggttc
aaagggacctccatgcacacgggaaagatgggcgtgttccccggcaactacatgagccct
gtcagcaggactgtttcagggggcagtcaacccaaagtgcccctgacgctgtgcacccag
gcagggaggggggtcaccatcgtcagcccttcaactgcccccttggggtgtgtggaacac
cccaaggtcctcaccacctgcccaggggcagccccacccagccccctgcccgctgcggtg
gtcaccaccgcccacatgcccccagggacggccaaagtcctgatgcacgtcacctcccag
atgaccgtcaatcaggcacgcaacgcagtcaggacagctgcctgccacaaccaggaccgg
cccacggcgtcagtgacgcccatcctgccccagcaagccgtggccttcctgccccacctg
gccgtgtgccctcagcccttaccagccgcggtgggcggtgcccccccctcctgctcccgc
accgccgtgtccctgggctgtgccgccgcctcgctcaccccgcccaacgtcagtgccgcc
tccctggatgccgacgccctgcgggccgtgaccgtgctggccgtgcccctggcccccggg
agcgccgtgtccctgggcgctgccatgccttcggccgccgctgccaaccaggccctcgcc
tgccgcatggacaaggacgggaagagagagaagaaaggtctccttaagctgctatccaat
aagaagaagctccgcccctctcctccttcctccccaacgctggaggcggagcaaagcgtt
gccatggagatggccctgggcgctgccggatccgacatggccgcctgcacagctggagcc
aatggcggtcgctgtgcgtctgccnngcaggccgaattggatccctctccatcagccttc
ggggcccttgactcctcccaccgcaagagcgcctcccacgagggccccgtgcccatcgcc
cctcccccgcgccaaccctgctcatcactgcacgcgctgcatgactctcggccaatcgtc
tgcgagaggtaccgggtggtggtgtcctacccgccccagagtgaggcggagctggagctg
aaggagggagacattgtgttcgtccaccggaagcgcgaggacggctggttcaagggcacg
ctccaacggaacggccgcaccggcctcttccccggcagcttcgtggacatcatctga
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