Clupea harengus (Atlantic herring): 105895090
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Entry
105895090 CDS
T09045
Symbol
hmg20b
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related isoform X2
KO
K24650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105895090 (hmg20b)
03036 Chromosome and associated proteins [BR:
char03036
]
105895090 (hmg20b)
Transcription factors [BR:
char03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG TOX
105895090 (hmg20b)
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
BRAF-HDAC complex
105895090 (hmg20b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
PI3K_P85_iSH2
HMG_WDHD1
DUF4763
MlaC
BRE1
GIT_CC
DUF4407
Motif
Other DBs
NCBI-GeneID:
105895090
NCBI-ProteinID:
XP_012677120
Ensembl:
ENSCHAG00000021173
UniProt:
A0A6P3VNX2
LinkDB
All DBs
Position
10:complement(22629886..22635414)
Genome browser
AA seq
321 aa
AA seq
DB search
MSQNTKHTQHDTGRFHAMGVKQEVSDAPGHRGTHHPSESAHEENTVTMSSVQPVKKRGWP
KGKKRKKVLPNGPKAPVTGYVRFLNERREQIRALHPDLPFPEITKRLGAEWSRLVPHDKQ
RFLDEAEREKVQYARELREYQQSEAYQITTAKVQDKKIKREELSSVIINSNSSGQGGLKS
SDFSNGFDIPIFTEEFLDQNKAREAELRRLRKANVEFEEQNAVLQKHIANMYGAKERLEA
ELGQDEQRTQSLQRHLLALKQTLVSSLSGVPLPGTGETPSVGTLDSYLSRLSNVLENSPN
EHRALLIKLQDVLAHLDSEKM
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgtcacagaacacgaagcacacccagcatgacactggaagattccatgccatgggtgtg
aagcaggaagtgagtgatgcgcctgggcacagaggtacccatcatccttcagaatcagca
cacgaggagaatactgtgacgatgtcatcagttcagcctgtgaaaaagcgcggctggcca
aaaggaaagaagagaaagaaggtgcttcccaacggccccaaggccccagttacgggctat
gtgcgcttcctgaacgaacgccgggaacagatccgtgccttgcacccggacctgcccttc
ccagagatcacaaagaggctgggcgcagagtggagcagactggtccctcatgacaagcag
cgcttcctggatgaggctgagcgggagaaagtgcagtatgcccgtgaactacgagaatac
cagcagagtgaggcttaccaaataaccaccgctaaagttcaggacaagaagataaagaga
gaggagttatcatcagtaataatcaattccaacagctctggacaaggagggttaaagtct
tccgatttttcaaacggatttgatatccctatcttcacggaggagttcttagatcaaaat
aaagcccgggaggccgagctgcggcggctacgcaaggccaacgtggagtttgaggagcag
aacgcagtgctgcagaagcacatcgccaacatgtacggagccaaagagcgcctggaggcc
gaactgggacaggacgagcagcggacccagtccctgcagaggcacctcctggccctcaaa
cagaccctcgtcagcagcctctccggcgtgcccctcccaggtacaggtgagactccctca
gtcggcaccctggactcttacctgagtcgcctgagtaacgtgcttgagaacagccccaat
gagcaccgtgccttattgatcaagctgcaggacgtcctcgcccacttagatagtgagaag
atgtga
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