Clupea harengus (Atlantic herring): 105895197
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Entry
105895197 CDS
T09045
Symbol
cyfip1
Name
(RefSeq) cytoplasmic FMR1-interacting protein 1 homolog
KO
K05749
cytoplasmic FMR1 interacting protein
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04810
Regulation of actin cytoskeleton
char05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
105895197 (cyfip1)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
105895197 (cyfip1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105895197 (cyfip1)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
105895197 (cyfip1)
Factors involved in mRNA localization
Other mRNA localization factors
105895197 (cyfip1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FragX_IP
CYRIA-B_Rac1-bd
Cypovirus_WIV_4
Motif
Other DBs
NCBI-GeneID:
105895197
NCBI-ProteinID:
XP_012677254
Ensembl:
ENSCHAG00000015400
UniProt:
A0A6P8G4C1
LinkDB
All DBs
Position
10:complement(24695534..24745607)
Genome browser
AA seq
1253 aa
AA seq
DB search
MASTVTLEDALSNVDLLEELPLPDQQPCIEPLPSSIIYQPNFNTNFEDRNAFVTGIARYI
EQATVHSNMNEMLEEGQEYAVMLYTWRSCSRAIPQVKCNEQPNRVEIYEKTVEVLEPEVT
KLMNFMYFQRTAIDRFCGEVRRLCHAERRKDFVSEAYLLTLGKFINMFAVLDELKNMKCS
VKNDHSAYKRAAQFLRKMSEPSSIQESQNLSMFLANHNKITQSLLQQLEVINGYEELLAD
IVNLCADYYENKMYLTPSEKHMLLKVMGFGLYLMDGNNSNIYKLDAKKRINLTKIDKFFK
QLQVVPLFGDMQIELSRYIKTSAHFEENKSRWSCTSVGSSPQYNICEQMIQIREDHMRFI
SELACYSNSEVVTGSGRQEAAKTDSEYRKLFDLALQGLQLLSQWSAHVMEVYSWKLVHPT
DKYSNKECPDNAEEYERATRYNYTQEEKFALVEVMAMIKGLQVLMGRMESVFNHAIRHTI
YSALQDFAQVTLREPLRQAIKKKKNVVQSVLQAIRKTICDWETIREPHNDPALRGEKDPK
GGFDIKVPRRAVGPSSTQLYMVRTMLESLIAEKSGFKKTLRSSLEGPTILDIEKIHRESF
FYTHLLNFSETLQQCCDLSQLWFREFFLELTMGRRIQFPIEMSMPWILTDHILDTKEASM
MEYVLYPLDLYNDSAHYALTKFKKQFLYDEIEAEVNLCFDQFVYKLADQIFAYYKILAGS
LLLDKRLRTDCKNQGANIPWPASNRYETLLKQRHVQLLGRSIDLNRLITQRVSTALHKSL
ELAISRFESEDLTSIVELDGLLEINRMTHKLLSKYLTLDSMDAMFREANHNVSAPYGRIT
LHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQEFQRDKPPNAQPHYLFGSKALNLAYSS
IFGFYRNFVGPPHIKAVCRLLGYQGIAVVMEELLKVVKSLLQGTIMQYVKTLMEVMPKIC
RLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCFQNLREVGNALLFCLLCEQSLSSEEVC
DLLHAAPFQNILPRVHVKEGERLDAKMKRLEAKYTALHMVPLIERLGTPQQIAIAREGDL
LTKERLCCGLSMFEVILTRVRGFLDDPIWRGPLPSNGVMHVDECVEFHRLWSAMQFVYCI
PVGAHEFTVEQCFGDGLNWAGCMIITLLGQQRRFDILDFAYHLLKVQKHDGKDEVIKSVP
LKKMVDRIRKFQILNDEIFAILNKYLKSGDGENMPVEHVRCFQPPIHQSLASN
NT seq
3762 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccacagtgactttggaggatgccctgtccaacgtggacctgttggaggagctg
ccgctccctgaccagcagccttgcatcgagcctctgccctcctccatcatttaccaaccc
aacttcaacaccaactttgaggaccgcaatgccttcgttactgggattgcgcgctacatc
gagcaggccaccgttcactccaacatgaatgagatgctggaggaggggcaggagtacgct
gtcatgctatacacctggaggagttgttccagagccatcccacaggtcaagtgtaatgaa
caacctaacagggtggagatctacgagaagaccgttgaggtcctggagcccgaagtcacc
aagctcatgaacttcatgtacttccagcgcacagccatcgaccgcttctgtggggaggtg
aggcgcctgtgtcacgcggagcggaggaaggactttgtgtcggaggcctacctgctcacg
ctggggaagttcatcaacatgttcgccgtgctggacgagctcaagaacatgaagtgtagc
gtcaagaacgaccactccgcctacaaacgtgctgcccagttcctcaggaaaatgtctgag
ccttcatccatccaagagtcgcagaacctctccatgttcctggccaatcacaacaagatc
acccagtctctgctgcagcagctggaggtcattaacggctacgaggagctcctggccgac
atcgtcaacttgtgcgcggactactacgagaacaagatgtacctgactcccagcgaaaag
cacatgctgctgaaggtaatgggctttggcttgtatctgatggacgggaacaacagcaac
atctacaagctggatgccaagaagcgaatcaacctcaccaagatagacaagtttttcaag
caactgcaggtggtgccgctgttcggagacatgcagattgagctgtccaggtacatcaag
accagcgcacacttcgaggagaacaagtccaggtggtcatgcacgtccgtaggcagcagc
ccgcagtacaatatctgtgagcagatgattcaaatccgagaggatcatatgcgcttcatc
tctgagctggcctgctacagcaacagcgaggtggtgacgggctctggtcgccaggaggcc
gcgaagacggacagtgagtacaggaagctgtttgacctggccctgcagggcctgcagctg
ctgtctcagtggagcgcccacgtcatggaggtgtactcctggaaacttgtgcatcccacg
gataaatactccaacaaagaatgtcctgacaacgctgaagagtatgaaagagccacaaga
tacaactacacccaagaggagaagtttgctctggtggaggtgatggccatgatcaagggt
ctgcaggtgctgatgggacgcatggagagcgtgttcaaccacgccatccgccacaccatt
tactccgccctgcaggacttcgcccaggtcaccctgcgggagccgctgcgccaggccatc
aagaagaagaaaaatgtcgtccagagtgttcttcaggccatacgcaagaccatctgtgac
tgggagacgatccgcgagccccacaacgacccagctctccgtggggagaaggaccccaag
gggggctttgacatcaaggttccccgccgtgccgttgggccctccagcacccagctgtat
atggtgaggaccatgctggagtctctcatagcagaaaagagtggctttaagaagaccctg
cgcagcagcctggagggccccaccatcctggacatcgagaagatccaccgcgagtccttc
ttctacacgcacctcctcaacttcagcgagacccttcagcagtgctgtgacctgtcccag
ctctggttccgagagttcttcctggagctcaccatgggccgccgcatccagttccccatc
gagatgtccatgccctggatcctcaccgaccacatcctggacaccaaggaggcgtccatg
atggagtatgtgctctaccccctggacctttacaatgacagtgcacactacgccctgacc
aagtttaagaagcagttcctctacgatgagatcgaggctgaggtcaacctctgttttgac
cagtttgtttacaaacttgctgatcagatattcgcctactacaaaatcctggctggaagc
cttctcctggacaagcgactgagaaccgactgtaagaaccagggtgctaacattccatgg
ccggcgtctaatcgctacgagacgctgttgaagcagaggcacgtgcagctgctgggtcgc
tccatagacctgaacaggctgataacccagagggtgtccaccgccctccacaagtccctg
gagctggccatcagtcgcttcgagagcgaggacctgacctccatcgtggagttggacggt
ctcctggagatcaaccgcatgacccacaagctcctcagcaagtacctgacgctggacagc
atggacgccatgttccgggaggccaaccacaacgtgtccgccccctacgggcgcatcacc
ctgcacgtcttctgggagctcaactacgacttcctgcccaactactgctacaacggctcc
accaacaggtttgtccgcacggtccttccgttctcgcaggagttccagcgggacaagcct
cctaatgcccagccccactacctgtttgggtcgaaggctctgaatctggcctacagcagc
atctttggcttctaccggaactttgtcgggccccctcacatcaaggcagtgtgcagattg
ctgggctaccagggcatcgccgtggtgatggaggagctgttgaaggtcgtcaaaagcctg
ctgcaaggcaccatcatgcagtacgtgaagacacttatggaggtgatgcctaagatctgc
cgcctgcctcgccacgagtacggctccccaggtatcctggagttcttccaccaccagctg
aaggacatcgtggagtacgccgagctgaagaccgtgtgcttccagaacctgagggaggtg
ggcaacgcccttctcttctgcctgctgtgtgagcagagcctgtcctcagaagaagtatgt
gacctcctgcacgctgcacccttccaaaacattctgccaagagttcatgtcaaagagggg
gagcgtctggatgccaagatgaagcgtttggaggccaaatacaccgcgctgcacatggtg
ccgctaattgagcgcctaggcacaccgcagcaaatagccatcgctcgcgagggagacctg
ctgacaaaggagaggctgtgctgtggcctctctatgttcgaggtcatcctgacccgtgtg
cgtggtttccttgacgaccccatctggcgcggtccattgcctagcaacggtgtgatgcac
gtggatgagtgcgtggagttccaccgtctttggagtgccatgcagtttgtgtactgcatc
cccgtgggagcgcacgagttcacagtggagcaatgctttggtgacggactcaactgggcc
ggctgtatgatcatcaccctgctgggccagcagcggcgctttgacatcctggacttcgcc
taccacctcctgaaagtgcagaagcatgacggcaaggatgaggtcatcaagagtgtgcca
cttaaaaagatggttgacagaattcgcaagttccaaatcctgaatgatgagattttcgcc
atcctcaacaagtacctgaaatctggggatggcgagaacatgccagtggagcacgtgagg
tgcttccagccacccatccaccaatcactggccagcaactga
DBGET
integrated database retrieval system
