Clupea harengus (Atlantic herring): 105895219
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Entry
105895219 CDS
T09045
Symbol
clocka
Name
(RefSeq) circadian locomoter output cycles protein kaput isoform X3
KO
K02223
circadian locomoter output cycles kaput protein [EC:
2.3.1.48
]
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105895219 (clocka)
03036 Chromosome and associated proteins [BR:
char03036
]
105895219 (clocka)
Enzymes [BR:
char01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.48 histone acetyltransferase
105895219 (clocka)
Transcription factors [BR:
char03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
105895219 (clocka)
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Histone modification proteins
HATs (histone acetyltransferases)
105895219 (clocka)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAS_11
PAS_3
HLH
PAS
PAS_9
bHLH_IRO3
Motif
Other DBs
NCBI-GeneID:
105895219
NCBI-ProteinID:
XP_012677292
Ensembl:
ENSCHAG00000007302
UniProt:
A0A6P3VPB7
LinkDB
All DBs
Position
10:complement(22199342..22245385)
Genome browser
AA seq
923 aa
AA seq
DB search
MTSSIDRDDSSIFDGLMEEDEKDKAKRVSRNKSEKKRRDQFNVLIKELGTMLPGNTRKMD
KSTILQKSIDFLRKHREIAAQSESSEIRQDWKPPFLSNEEFTQLMLEALDGFFLAIMTDG
NIIYVSESVTSLLEHLPSDLVDQNLLNFLPVGEHSDVYKALSANILEGETLTPDYLKTKN
QLEFCCHMLRGTIDPKDPPVYEYVKFIGNFKSLNNVPNSTRNGFEGVIQRSLRPAFEDRV
CFIATVRLAKPQFIKEMCTVEEPNEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSG
YDYYHVDDLETLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQTQYYITYHQWNSRPEFI
VCTHTVVSYAEVRAEQRRELGLEESLPQISADKQSQDSGSESQLNTSSLKEALEGFDCSH
TPSVSSRSSRKSSHTAVSEPNSTHTKLPTDRSTPPPPRQSVSAIEMTSQRRSSISSQSMS
SQNTGQTMATSVVSQQPQQQQQQQPQQPQQQLQLQPAVQFTTQLDAMQHLKDQLEQRTRM
IEANIQRQQQELRQIQEELQRVQGQGLQMFLQPGASGLNLGSVQLTQGTAVQAGGALTMQ
GQVVPVGSLQGSLTATHPASQHAVQQQQQQQQQQQQPQQVQAQPQNLLRDQSTTLTQVQR
PTHSLQSPQGALPPSLYNTMMISQPAQANVVQIATSLAQSSSPSGAAMATFSQDRQIRFP
AGPQLLTKLVTGPMACGVMVPTTMFMGQVVTAFAPQQGQPQTISIAQQPPQQQQQQQQQQ
QQQQQQPTQEQQAQTQAAVAAVTQQQGQAKAQQQQTQFLQAPRLLHSNQSTQLILQAAFP
LQQQGAFTTAQQLQQQQQQQQQQLHQQQQQQQLHQQQQQLHQQQQQQLQQQQQQQQQQQQ
QQQQQLASHRADSMSDRSNAPTQ
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgacctccagcatagaccgggatgacagcagtatctttgatgggttaatggaagaagat
gagaaggacaaagcaaaacgagtttccaggaataagtcggagaagaagaggagagaccag
ttcaatgtgctcatcaaggaactgggtaccatgttgccgggcaacacccgcaagatggac
aagtccaccatcctgcagaagagcattgacttccttcgcaagcacagagaaatcgctgcc
cagtcggagtcgagcgagatccgtcaggactggaagcctccgttcctcagcaacgaggag
ttcactcagctgatgctggaggcactagatggcttctttctggccatcatgactgacggc
aacatcatctacgtctccgaaagcgtcacgtccctactggagcacctgccttcggaccta
gtggaccagaacctgttgaacttcctgcccgttggggagcactcggacgtctacaaggcc
ctgtcggccaacatcctggagggggagacgctcacgccagactacctgaagacgaaaaac
cagctcgagttctgttgccacatgctccggggtacgatagaccccaaggacccgcctgtg
tacgagtacgtgaagttcattggaaacttcaagtccctgaataatgtgcctaactcaacg
cgtaacggcttcgagggggtcatccagcgatcgttgcggccggcatttgaggatcgggtg
tgtttcatagcgactgtgcggttagccaagccccagttcatcaaggagatgtgcactgtg
gaggagcctaatgaggagttcacctctcgacacagcttagagtggaagtttctctttctt
gaccacagggcgccgcccatcataggctacctgccgttcgaggtgctgggtacatcaggg
tatgattactaccacgtggacgacttggagacactggcaaagtgccacgagcacttgatg
cagtatgggaaaggcaagtcctgctactacaggttcctcaccaaaggccagcagtggatc
tggctgcagacgcagtactacattacctaccaccagtggaactccagacccgagttcatc
gtttgcacacacacagtggtcagttatgctgaggtgagagcggaacagcggagagagctg
ggtctcgaggagtctctcccccagatatctgcagacaagcagagtcaggactcgggctca
gagtcgcaactcaacacctccagcctgaaggaggcgctagagggctttgactgcagccac
acgccctccgtctcgtcgcgctcctcccgcaaatcctcacacaccgctgtctccgagccc
aactccacgcacacgaagttgccgacagaccgcagcacgccgccaccgccgcggcaatcc
gtctcggccatcgagatgacatcacagcgccgctcctccatcagcagccagtcgatgagc
tcgcagaacacgggtcagacgatggccacgtcagtggtctcccagcaaccgcaacagcaa
cagcaacagcagccacagcagccacagcaacagctccagctccagcccgctgtgcagttc
accacccagctggacgccatgcagcacctgaaggatcagctggagcagcgcacgcgcatg
atcgaggccaacatccaacggcagcagcaggagctgcggcagatccaggaggagttgcag
cgggtgcagggccagggcctgcagatgtttctccagcctggcgccagcgggttaaacctg
ggctcggtgcagctgactcaggggacagccgtgcaggcagggggcgctctaaccatgcag
ggccaggtggtaccagtgggctcccttcaaggcagcctcaccgccactcacccggcctcc
cagcatgcagttcagcagcagcaacagcagcagcaacagcagcagcagccccaacaggtc
caggcgcaacctcagaatctcctgcgtgatcagagcaccaccctcacgcaggtccagcgt
ccgacccactcgctgcagtccccccagggtgcgctgcctccctccctctacaacaccatg
atgatctcccagccggcccaggccaacgtggtgcagatcgccaccagcttggctcagagc
agcagtcccagcggcgctgccatggcaaccttctcccaggaccggcagatccggttccca
gcgggccctcagctgctgactaagctggtgactggtccgatggcttgcggcgtcatggtg
cccaccaccatgtttatgggccaagtggtgacggcgttcgcaccgcagcagggccagccg
cagaccatcagcatcgcccagcaaccgccccagcagcagcagcagcagcagcagcaacag
cagcagcaacagcagcagcccacgcaggagcagcaggcgcagacgcaggcggccgtggca
gcagtcacgcagcagcagggtcaggccaaggcgcagcagcagcagacgcagttcctgcag
gctccccggctgctccacagtaaccagtccacgcagctcatcctgcaggccgccttccct
ctgcagcagcagggcgcattcaccactgcacagcaactgcagcagcagcagcagcaacaa
cagcagcagctccatcaacagcaacagcaacagcagctgcatcaacagcaacagcagctg
catcaacagcagcaacagcagctacaacaacagcagcagcaacaacagcaacaacagcag
cagcagcagcagcaactggcctcgcatagggcagacagcatgtcggaccggtccaacgcg
cccacccagtag
DBGET
integrated database retrieval system
