KEGG   Clupea harengus (Atlantic herring): 105895391
Entry
105895391         CDS       T09045                                 
Symbol
lig3
Name
(RefSeq) DNA ligase 3
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:char00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    105895391 (lig3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:char03400]
    105895391 (lig3)
Enzymes [BR:char01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     105895391 (lig3)
DNA repair and recombination proteins [BR:char03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     105895391 (lig3)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N LIG3_BRCT zf-PARP DNA_ligase_A_C BRCT_2 RNA_ligase mRNA_cap_enzyme
Other DBs
NCBI-GeneID: 105895391
NCBI-ProteinID: XP_012677474
Ensembl: ENSCHAG00000010657
UniProt: A0A6P3VPK4
LinkDB
Position
8:complement(3189403..3199737)
AA seq 1023 aa
MQNICLRKALHTARNPTVTLLRAQIIWRFGSTHFTQCTQPLTPHCGRRPTHSHCCDFTPL
SRKFGTSSRFYIHLSWPESLSERPTMAEQRFCVEYAKRGTAGCKKCKDKIMKGIVRIGKI
VPNPFSESAGEMKEWYHGKCIFEKLERARATTKKIEDITDLEGWEELEDDDKELINKLVS
DLAAKTNATPKKKVQAKLNTSGPLSAPPADPSLNAPRKFSGFTATKAGTSASPGQSALKA
GQGSALSAQLCDPNHKDCLLREFRKLCAMVAEISSYNSKTQIIQDFLKKGSGGDKFRGDL
FLTVKLLLPGVVKNVYNLNDKQIVKLFSRILNCNQDGMLRDLEQGDVSETVRLYFDDSKS
FPPATKSLLTLQEVEASLNRLAQLTKEDDQQKELQDIAKKCTGNDLKCIIRLVKHDLKIN
SGAKHVLDAVDPNAYDAFKASRNLGDVIERVLRNQQDASNGSGPRKSLKIEASLMTPVQP
MLAEACKSVEYAMKKCPNGMYSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKE
YIPQAFVGGDSMILDAEVLLIDTNTSKPLPFGTLGVHKKAAFQDAKVCLFVFDCIYFNGV
SLMDKALYERRKFLNDNMVEVPNRILFSEMKHVTRASDLAEMITRVIREGLEGLVLKDVK
GLYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDPASKKW
CTVTKCSGGYDDATLARLQKELDVIKISKEPSKIPGWLKIVKNYYPDFLIRDPEQAPVWE
ITGAEFSKSEMHTADGISIRFPRMTRIRDDKDWKTATNLPRLKELYRISKERSDFELTTG
QSKDDKDDENSSGGASGGSSPPSTSHKTPTTSKARNSAAPRLKQVKSEPISPAKRKMPAE
NHSSKKIKTEVQIKTEAQIKTEVAHSNGKSKVKSASTKVIEAGPEKTLLDIFSGVKLYLP
QGVQDYDKLQRYFVAYDGDLVPEYDAATATHTLTDPEEDSKAQRVTSNWIWACIRKRRMV
PPC
NT seq 3072 nt   +upstreamnt  +downstreamnt
atgcagaacatttgccttcgcaaggcattacacaccgccaggaatccgactgtcaccttg
ctgagagcgcaaattatctggcgatttggcagcacacatttcactcagtgcacccaacca
ctgactcctcattgtggcaggcgtcccactcattctcactgctgcgattttaccccgctc
tctcgaaagttcggtacaagctctaggttttatattcatctttcgtggcccgagagcctc
tcagaaaggccaacaatggcagagcagaggttctgtgtagaatatgccaaacgtggcact
gcgggctgcaagaagtgcaaggacaagatcatgaagggaattgtccgcatcggcaagatc
gtgcccaaccccttcagcgagtctgctggagagatgaaagaatggtaccacgggaagtgc
atcttcgagaaactggagcgtgccagggccaccaccaagaaaatcgaggacatcactgac
ctggagggctgggaggaacttgaggatgacgacaaagaactcattaataaacttgtctca
gatcttgctgccaaaaccaatgcgaccccaaagaaaaaagtacaggcaaagttaaacacc
agcggaccgctgtctgcaccacctgctgatccgtcacttaatgcccctcgaaagttctct
ggcttcacagctaccaaggctggtacctctgccagtccagggcagtctgcactgaaagca
ggccagggcagtgccctctccgctcagctgtgtgaccccaaccacaaggactgcctgttg
cgcgagttccgcaagctctgtgccatggtggcagagatctccagctacaactctaagact
cagatcattcaggacttcttgaagaaagggagtggtggagataagttcagaggagacttg
ttcctcactgtgaagctgcttctaccaggagtggtgaagaatgtctacaatctgaatgac
aaacagattgtgaagttattcagtcgtatattgaactgcaaccaagatgggatgctgcgc
gacctagaacagggggatgtgtcagaaaccgtgcggctatattttgatgacagtaagtcc
ttcccaccagcaaccaagagtctcctcaccctgcaagaggtcgaagcctcactgaaccgt
ctggctcaactcaccaaggaagacgaccagcagaaagagctccaggacattgccaaaaaa
tgcacaggaaatgacctcaagtgcatcatcagacttgtgaagcatgatttgaaaataaac
tcaggagctaagcatgtgctggacgccgtggaccccaatgcttacgacgcctttaaagcc
tcgcggaacttgggcgatgtcattgagcgagtgctgcggaaccagcaggatgcgtccaat
ggcagtgggccccgcaagagcctgaaaatagaggcctccctcatgacccctgtgcagccc
atgctggcagaggcctgtaaatctgtggagtacgccatgaagaagtgccccaacgggatg
tactccgagatcaaatatgatggcgagcgtgtgcaggtccacaaaaatggagatcacttc
agctatttcagccgcagtctcaagccagtgctcccacacaaggtggcacatttcaaagaa
tacatacctcaagcttttgttggtggcgacagtatgattttggatgctgaggtccttctc
atcgacaccaacaccagcaaacccctcccctttggaacactgggagtgcacaagaaagct
gccttccaagatgccaaagtgtgtctgttcgtcttcgactgcatttacttcaatggtgta
agcctgatggataaggctctttatgaacgaaggaagtttctcaatgacaacatggttgaa
gttccaaacaggatattgttttcagaaatgaaacatgtcactagagcatctgatctggca
gagatgatcacccgcgtcattcgagaggggctggagggcctggtgctgaaggacgtcaag
ggcctatacgagcctgggaagcgtcactggttgaaggtgaagaaggactacctgaatgag
ggcgccatggcagacacggctgacctggtggtgttaggagctttctacggcaaaggctca
aatggaggaataatgtccagcttcttgatgggctgctatgaccccgcatctaagaagtgg
tgcacagtgaccaagtgctctggaggctatgatgacgccactctggccagactgcagaag
gagctggatgtgattaaaatcagcaaggaaccaagcaaaatccctggctggttaaagatt
gttaaaaactattacccagatttccttatccgcgatccggagcaagcaccagtgtgggag
atcacaggagcggagttttccaagtcagagatgcacacagccgatggaatctccatccgt
ttcccgcgcatgacgcgtatccgtgacgacaaggactggaagactgccaccaacctgcct
cggctgaaggaactctatcgcatatcgaaggagcgctctgactttgagttgaccacgggc
cagtccaaagatgataaggatgatgagaactcctctggtggagccagtggaggcagctct
ccaccctccacatcacacaagacccctaccaccagcaaagcccggaacagtgctgctcca
cggctgaagcaggtgaaatcagaacccatttccccagccaagaggaagatgcctgcggag
aaccacagcagcaagaagattaagactgaagttcagattaaaactgaagctcagattaag
actgaagttgcccatagcaatgggaaaagcaaagtgaagagcgcctccaccaaggtgata
gaagcaggtcctgagaagacccttttggacattttcagtggcgtgaagctctacctgccg
cagggtgtgcaggactacgacaaactccagcgttattttgtggcctacgacggagatctg
gtgccggagtacgacgctgccacagccacgcacacgcttacagatcccgaggaagacagc
aaagctcagagggtcacctccaactggatctgggcgtgcattcgcaaaagaagaatggtt
cctccctgctga

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