Clupea harengus (Atlantic herring): 105895403
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Entry
105895403 CDS
T09045
Symbol
frem2a
Name
(RefSeq) FRAS1-related extracellular matrix protein 2a
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105895403 (frem2a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
char04091
]
105895403 (frem2a)
Lectins [BR:
char04091
]
C-Type lectins
Lecticans
105895403 (frem2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Calx-beta
Cadherin_4
Big_9
PGAP1_2nd
Motif
Other DBs
NCBI-GeneID:
105895403
NCBI-ProteinID:
XP_042564531
Ensembl:
ENSCHAG00000026742
UniProt:
A0A8M1KKF1
LinkDB
All DBs
Position
8:27034858..27080190
Genome browser
AA seq
3120 aa
AA seq
DB search
MAFYRLLVVVVSLTCNLSVEGQDSYGLSYALRSELSEDAILVANNGIRVPFGRSVYIDPI
NDLVVDVQPDDRCSITVLDNDPLSQRPGHLSPKKFPCEFGPNDVRYFHYGSRSPVRDRVR
LQLRYDTQSDTIIIPFMMEVEVVFTQLEVITKNMPLTVDSFNGVSNPVDNKILDFTFDRD
SEQCEVTSLASSSALPRYGKVVDDEDKLGKMMDCDEFLTSDIRYQHTFSNKSPNKDYIPM
VVELYNKEGNLLKQEFFHVMVRIQVGKENTPPKPSFVSMMMMEVDQFVMTAITPDMLSAD
DIESSPEELIFNITSPLSIEEGYIVSTDDRNLPITAFYQRDLFDLKIAYKPPSLDSDTER
IFQIEFEVLDTDGGVSDPFAFMIVVKPMNTLAPVVTKNTGQLLYEGQSRSLVTSHNLEIS
DEDNLDRVKLSVIDGLRHGELTVLGSRRKHFTPEELDAGVVVYQHDGSDTYSDNIIFRMT
DDKNEVEFLFPITIVPMDDEAPIVNANTGLVLFKHQMVPISPLMLSAADVDSEDSTIKFT
IQPPFSTIGEVLLRQSEAPEDPSSWKFNSQDEVYEKVVSEWQQKDITDGTLFYRHTGPHS
TETVTDQFIFTVEDDNDPPNQSGDNTFVIRVLPIDDIPPVLFPGTSLQMVVHEYQLTHFS
KNVLRYTDLDSDDRDLKYTVIAPPADTDENNPLVFGSIVLTDSPDTEIDDFTQAQINHHK
ISFSPPDIELGIIPHVVQFHYTVEDAAGNSVKGVFTIHVQPVNNKPPEIVNTGFTVLEHG
THVIKNVELDANDLDTENTDLTFTATALPQHGKLQLKSGDLSKGDTFRLTDVWDGSLLYV
HNGDEINGDSFQLEVTDGIHLVPITVKVVVKLIDDEAPKISMQAGTIGSTMEVLENGATE
ITSSVIQGEDDDTDNLMLTFILEDAPVLGEILVNGAPASKFTQADVINGLVVYAHTSGEV
GFITKEDAFNLTLSDMSDEWTVGGNKVNGVRVLVTILPVDSKPPEITVRPPFSVLEGEKT
SIGSDHISAEDPDTPLDDILCTIVVQPSSGYIENISPAPGSEKSRSGTAVSAFTMKDIKD
GNVYYVQSIHKTVEPVEDRFTFRCSDGINFSERLFFPIVIIPTNDEKPEIFAREFLVMEG
MNIVIDTPILNGADADIPAEELTFIITKPPKHGSILNQLATGSIPVTNFTLEQIKEASSV
IYEHDDSETTEDSFDVILTDGKHKVEGTIKIVIIAVDDETPRMLINDGLEVEVGETKEIT
AKLLKATDLDSEDSTLTFVVRYGPSQGLLQRTTPQGVLENITVGMNFTQAEVDQGFILYE
HNGQEGVRDLLKFDVTDGPNALIDRYFYITVSSIDMVFPDVVSKGVSLKEGGRVTLTTDL
LSTSDLNSPDEHLVFTITRAPVRGHLECTDSPGIPIASFTQLELAGSKVYYIHTADDEVK
MDSFEFEATDGYNPVFRTFRVAIVDVDNKKPVLTLHDLLATEGQSKLITPFELTVEDQDT
PERLLKFTITQLPIHGKLLFNNSKPIASFTKQDLNENMISYKHDGTDSEEDSFSFTITDG
THNDFFVFPDTVFETRKPQTMKITIVSVDNGAPQIVLNKGATTLKMLSTGHLGFPITSKS
LRAEDRDSPAAALLFRVTGQPEHGYLIHLGKGNDSISTFSQADIDDQKISYVLKDNDNAT
SDLFHFSVEDNGGNSLKSQQFRLNWAWISLERESYVVDEEDKFLEVVLTRRGYLGETSFV
GIGTLDGTAEKDKDFKGKSQKQVQFNPGQAHAAWKVRVFSDGKYEQSETFQITLSEPVMG
ALEFPTKAAVEVVDPGDESTVFIPRASFGIDENIGELLIPVHRSGDVSEELMVVCHTLQG
TAKGTVPSSVLSFSDYISRPEDPSSLLHFDKDETEKLCRVVVIDDSLYEGEESFNVTLSL
PVGGRLGTEFSTARVTILPDSDDAPVFYFGEMEYSVDESAGYVEVRVWRTGTDLSKAAAV
TVRSRKTDPVSAEAGQDYVGISQNMDFAPGVNMQTFRVTILDDLGKPALEGTEKFELVLR
LPSNGVIGEPGRATVSINDSVSDLPKMQFRQAVYSGEEGEGSISAVVKRGGDLSFTSTVR
CYTRQGSAEVMDDFQERPNTDGSIITFLPGESEKPCVLKLVDDLIFEEEEELRLRLGTPK
SNSPFGASVGPQEETLVKIQDTADKPIIRLGEIKFSVNEPKEAGQVTVVKIPVLRVGDTS
KVSVVRVHTKDGSATSGEDYHPISEDVEFKQGDREHLVEVEVLYDGVREMREAFTVHLKP
DENMVAEIQTTKAIVYIEETNSMADVTFPSLPRVASLLHYDGVRTKRDVGSKENLKPPAG
YPVICVTACNPRFPDFDKTGSICVSESINDTLTRYRWLISAPAGPDGVTSPMREADFDTF
FTSSKMITLDSVYFQAGSRVQCAARAVNSNGDEGLELSSPIITVSQEEGMCHPRKVGTVG
AEPFSAKLRYTGADDPEHANLIKLTVTMPHIDGMLPVISTRPLSNFELTLSPDGTRVGNH
RCSNLLDYNEVSTRYGFVTEATRNPESIGEISPYQYSAPLRSNSTLRFYRNLNLEACLWE
FVSYYDMSELLTDCGGSIGTDGQVLNLVQSYVTLRVPLHVSYVFHSPVGIGGWQHFDLQS
ELRLTFTYDTAILWQDGIGSPPQAEVQGALYPTSMRINEQGRLVVNFRTEARFRGLFVAS
HPGEDRQQFACLHANSMVMSMNHPGLTFNLTLVRTEPTYHQPVQQWTFISDFAVRDYSGT
FTVKLIPCTAAMNVEYSVPPVCNPREPITFDMDIRFQQVSDPVAVEFSLNTQMILLSKRS
LWLSDGSMGFGQESDAAFSEGETIYGRVMVDPVQNLGDSFHCSIEKVFLCTGADGYVPKY
NPTKSEFGCLADSPTLLYRFKIIDKAQPDTQARSFGDVPFNALLAVDDPSALTLVKQPGS
DGFRVDSDAMFQVAAGREWYIHTIYTVRSKENTHRGIGKRSLEYHSVVSGDNPPALHSRS
RRDAGEVPALAENIGTDNNRGTNIMHIALDRSRRRASSGDEALEDGVLPRERSSKRGEED
AVTVVGALVGLLLTVLLAVVLALLLRSRQKGAKKAPKPSGSMQPVMVTDKSYDSTDSSEV
NT seq
9363 nt
NT seq
+upstream
nt +downstream
nt
atggcattttatagacttttagtcgttgtagtttctctcacgtgtaacttgtccgttgag
ggacaagacagttacggattatcgtatgcattaagatctgaactgtcggaggatgctatt
ctggtggccaacaacggaattcgcgtgccttttgggagatcagtctacattgatcccatc
aatgatctggtagttgacgttcagccggacgacaggtgcagcataacagtcctagacaat
gatcccctctctcaaagacccggacatctttcgccaaagaagtttccctgtgaatttggt
cccaatgatgtcaggtactttcattacggttcgaggagtcctgtcagagacagagtgaga
ctgcaactcaggtatgacacgcagagcgacacgatcatcataccgtttatgatggaggtg
gaggtagtttttacacagttagaagtaattaccaaaaacatgccactcaccgtcgatagc
tttaatggtgtcagcaatcctgtcgacaacaaaatattggactttacctttgacagagat
tcagagcaatgcgaggtcacctctctagccagcagcagcgcactacccagatatggcaaa
gttgtagatgatgaagataaactggggaaaatgatggactgcgatgaattccttacatca
gacattcgttatcagcacacgtttagtaacaagtcgcccaacaaagactatatccccatg
gtagttgaactatataataaagaggggaatctgctgaaacaggaatttttccatgttatg
gtgcgcattcaagtgggaaaggaaaacacacctccgaaacccagctttgtttcaatgatg
atgatggaagttgatcagtttgtcatgacggctataactcctgacatgctttcagcagac
gatatagagtcaagtccagaggaactcattttcaacatcacctctcctctttccattgaa
gaaggctatattgtgagtacagatgacaggaacttgccaattactgctttttatcagagg
gacctttttgatttaaaaatcgcgtacaagccaccttctcttgactcagatacagagagg
atcttccagattgaatttgaggtgctggacactgacggtggcgtttcagacccctttgct
ttcatgattgttgtgaaacccatgaacactcttgccccggtcgtaaccaaaaacacaggc
cagcttttgtacgagggtcaatccagatcactagtcacatcgcacaacttagaaatcagt
gacgaggacaacttggacagagttaaattgagtgtcattgatggtctccgacatggtgag
ctcactgtgcttggttcccgtagaaagcatttcaccccagaagagctagatgcaggcgtg
gttgtctatcagcatgatggcagtgacacctacagcgataacatcattttcagaatgaca
gatgataagaatgaagttgagttcctgtttccaatcaccattgtaccaatggatgacgag
gctcccatagtcaatgctaatacaggactggtgttgttcaagcatcagatggtgccaatc
tcccctctaatgctaagtgcagctgatgtggactctgaagactccaccattaagttcacc
attcagcctccattctcaactattggcgaggtgctactgagacagtccgaagccccagaa
gacccctcttcgtggaagtttaactcacaggatgaggtctatgaaaaggtggtgtctgag
tggcaacagaaagacatcacagacggaacacttttctatcgtcacaccggtccccatagt
accgagacggtcactgatcagtttatatttacagttgaagatgacaatgaccctcccaat
cagtctggagacaatactttcgtcatcagagtcctgcccattgatgacatcccacctgtg
ctgttcccaggaaccagcctacagatggtcgtgcacgagtaccagctcactcactttagc
aaaaatgtcctccgttacacagaccttgattccgatgatcgcgacctgaaatacaccgtc
atcgcgccaccagcagacacagatgagaacaacccgttggtgtttgggtctatcgtttta
accgacagcccagacacagagattgatgacttcacacaggcacaaatcaaccatcacaaa
atttcatttagccccccagatatagaacttggaatcattccacacgtggtccagtttcat
tacacggtagaagacgcagctggaaatagtgtgaagggagtctttaccatacacgtgcaa
ccggttaacaataaaccaccagagatcgtaaacactggcttcactgtgcttgaacatgga
acacatgttatcaaaaatgttgagctcgatgccaatgaccttgacacagagaatacagac
ctgacttttactgcaactgctcttcctcagcatggcaaactccagctcaaaagtggtgat
ctaagcaaaggtgatactttcagattgacggatgtctgggatggctcactcttatatgta
cacaacggggatgagatcaatggtgattcatttcagttggaggtcaccgatggcatccat
ttggtcccgatcactgtgaaagttgtggtgaagctcatcgatgacgaggcacccaaaatc
agcatgcaagccgggacgatcggctccaccatggaagtcctagagaatggtgccacagag
atcacatccagtgtgatccagggggaagatgatgacactgataacctcatgttgaccttt
atcttggaggacgccccagttcttggggagatcttggtaaacggggcacctgcaagcaag
ttcacccaagccgacgtcatcaacgggctggtcgtgtatgctcacacaagcggagaggtt
ggcttcatcaccaaagaggatgccttcaacctgaccctctcagatatgtctgacgaatgg
actgtgggcggaaacaaagtgaatggagtgcgggttctcgtcactatcctccctgttgac
agcaaacccccggagatcacggttagacccccgttcagtgtcttagagggagaaaaaacc
tctattggtagtgaccatataagcgctgaagatccagacacgcctcttgatgacatcctg
tgcacaatcgttgtccagccatcctcaggttacatagagaacatatcccctgctccaggt
tcagagaagtccagatcaggcacagctgttagcgctttcactatgaaagacattaaggac
ggaaacgtctactatgtacagagcatacacaaaacagtggagccggtggaggacaggttt
actttcagatgttcagatggtatcaacttctcagagaggcttttcttccccattgtgatc
attccgaccaatgatgagaagcctgaaatttttgccagagagtttctagtgatggaggga
atgaacattgttatcgacactccaatcctgaacggagctgatgccgatattcctgcagaa
gaattaaccttcatcatcaccaagcctcccaagcatggctccatcctaaatcagctggcg
actggctccatcccagtcacaaacttcacactggagcagatcaaggaagcgtcgagtgtc
atctatgagcacgacgactctgagaccacagaggatagcttcgatgtgatcctcaccgac
ggaaagcacaaagtggagggcaccattaagattgtgatcatcgctgtggacgacgagaca
cccagaatgctcataaacgacggactggaggtggaggtgggagaaaccaaggaaatcaca
gccaaattgttgaaggctactgatctagattcagaagacagcacgctcacgttcgttgtg
cgatatgggccgagtcaaggactactgcagaggaccactccacagggagttctggagaac
atcacagttggcatgaacttcacccaggcagaagtggatcagggattcattttgtatgaa
cacaatggccaagagggcgtccgcgacctcctcaagtttgacgtgacagatggccctaac
gcactcatcgacagatacttctacatcacagtgagcagcattgacatggtcttccctgat
gtggtcagcaaaggtgtgtctttgaaagaaggaggccgagtgacactgaccactgacctg
ctcagcaccagtgacctgaatagcccagacgaacatctggtcttcaccatcaccagagcc
ccagtcaggggacacttggagtgcaccgactcgcccggcatccccatcgcctccttcacg
cagctagagctggctgggagcaaggtctactacatccacaccgctgacgacgaagtgaaa
atggacagctttgagtttgaggccaccgacggctacaacccagtgtttcgtaccttccgt
gtagccattgtggacgtggacaacaagaagcccgtcctgactctccacgatttgttggca
acagaaggccagagcaagctcatcacaccgtttgagctgacggtggaggatcaagacaca
cctgaacgcctcctgaagttcacaatcacccagttgcccattcatggcaaattgctcttc
aacaacagcaagcctatcgcctccttcaccaaacaggacctgaacgagaacatgatcagc
tacaagcacgacggcacagactccgaagaggacagcttctccttcaccatcacagacggc
actcacaacgacttctttgtcttccctgacacagtgtttgagacgcgcaagcctcagacc
atgaagatcaccatcgtgtcagtagacaacggggctcctcagattgtgttgaataaaggt
gccacgactttgaagatgttgtctacaggtcacctgggcttcccgattaccagcaagtcc
ctgagggccgaggacagagacagccctgcggccgccctgttgttccgcgtgaccggtcaa
ccagagcatggctacctcatccacctgggcaaggggaacgactccatctccaccttctct
caagctgacatcgatgaccagaagatcagttacgtgctgaaggacaatgataatgcaaca
agcgacttgtttcacttctccgtcgaggacaacggaggaaacagcctgaagagccagcag
ttccgcctgaactgggcctggatctccctggaaagggagagctatgtggtggacgaggag
gacaagttcctggaagtggtcctcaccagacgaggctacctgggagaaacctcatttgtt
ggcattggcacgctcgacggcacggccgagaaggacaaggatttcaaaggcaagtcgcag
aagcaagtgcagttcaacccgggccaggcccacgccgcctggaaggtccgcgtcttctcc
gacggcaagtacgagcagtcggagacgttccagatcaccctctcggagccggtcatgggc
gccctggagttcccgacgaaggcggccgtggaggtcgttgacccgggtgatgagtccacc
gttttcatcccccgggccagctttggcatcgatgagaacatcggcgagctgctcatcccg
gtgcaccgcagtggtgatgtcagcgaggagctcatggtggtctgccacacactgcaaggc
actgccaaaggaacagtccccagctccgtgctgtccttctctgactacatctctcggccc
gaggaccccagcagcctgctgcacttcgacaaggacgagacggagaagctctgccgcgtg
gtggtcatcgacgactcgctctacgagggcgaggagagctttaatgtcaccctcagcctg
cccgtgggcggccgcctgggcaccgagttctccaccgcccgtgtcaccattctacccgat
agcgatgacgctcccgtgttctatttcggggagatggagtattccgtggatgaaagtgct
ggctatgtggaagtgcgagtctggaggacaggaacagacctttccaaagctgctgcggtt
actgtccggtcgcgcaagactgaccccgtttctgcagaagctggtcaggactatgtgggc
atcagccagaacatggactttgcacctggggtcaacatgcagacgttccgggtcaccatc
ctggacgacctgggcaagccggcgctggagggcaccgagaagtttgagctggttctgcgt
ctgccgtccaacggtgtcataggagagcctggcagggccacggtgtccataaatgattct
gtgtcagacttgccgaagatgcagttccgacaggcggtgtactccggcgaggagggcgag
ggctccatctcagccgtggtgaagcgcggcggagacttgagcttcacctccaccgtgcgc
tgctacacccgccagggctcggcggaggtgatggacgactttcaggagagacccaacacc
gacggctccatcatcaccttcctgccaggtgagtcagagaagccatgcgtgctgaagctg
gtggatgatctgatctttgaggaagaggaggagctgagactgcggctgggcacgccgaag
agcaactctcctttcggagctagcgttgggcctcaggaggagaccctcgtgaagatacag
gacacggccgacaagcccatcatcaggctgggggagatcaagttcagcgtgaacgagccc
aaggaggcaggtcaggtgacggtggtcaaaatccccgtgctccgagtcggcgacacctcc
aaggtttccgtggtgagagtccacaccaaagacgggtcggccacgtccggggaggactac
catcccatctcagaagatgttgagttcaaacagggcgacagggagcaccttgtggaggtg
gaggtgctgtacgacggcgtgagggagatgagggaggccttcaccgtccacctgaagccc
gacgagaacatggtggcggagattcagacgaccaaggccatcgtgtacatcgaggagacg
aacagcatggcggacgtcaccttcccctctctccctcgcgtggcgtctctgctccactac
gacggcgtcagaaccaagagagacgtcgggtccaaggagaacctcaagcctccagctggc
taccctgtcatctgtgtcacggcttgcaaccccagattccccgacttcgacaagacgggt
tccatctgcgtgagcgagagcatcaacgacactctgacgcgctaccgctggctcatcagc
gcccccgccgggccggacggcgtcaccagtcccatgcgcgaggccgacttcgacaccttc
ttcacctcgtccaagatgatcacgctggactccgtctacttccaggccggctcacgggtg
cagtgcgcagcccgcgccgtcaactccaacggggacgagggcctggagctcagcagtccc
atcatcaccgtcagccaagaggaaggcatgtgccaccctcgcaaagtgggcacagtgggc
gccgagccattctctgccaagctgcgctacacgggcgcggacgaccccgagcacgccaac
ctgatcaagctgactgtcaccatgccccacattgatggtatgctgcctgtgatctccacg
cgtcctctgtccaacttcgagctgactctgagccccgacggcacgcgcgtgggcaaccac
cgctgctccaacctgctggactacaacgaggtgagcacgcgctacggcttcgtcaccgag
gccacccgcaacccggagagcatcggcgagatctcgccgtaccagtacagcgcccccctc
aggagcaacagcacactgcgcttctacaggaacctcaacctggaggcctgcctgtgggag
ttcgtcagctactacgacatgtccgagctgctcaccgactgcggagggtccattggcacg
gacggacaggtgctgaacctggtccagtcctacgtgacgctccgcgtgcccctccacgtc
tcctacgtcttccactcgcccgtgggcatcggcggctggcagcacttcgacctgcagtcg
gagctgcggctcaccttcacctacgacacggccatcctgtggcaggacggcatcggcagc
cccccgcaggcggaggtgcagggtgccttgtacccgaccagcatgaggattaatgagcag
ggacgcctggtggtcaacttccgcacggaggcccgcttcaggggcctgtttgtggcgtcc
cacccgggtgaggacagacagcagtttgcctgcttgcatgccaattctatggtcatgagt
atgaaccaccccggactgacctttaacctgaccctggtgcggactgagcccacctatcac
cagccagtgcagcagtggaccttcatctctgactttgcagtacgcgactactccggcacg
ttcactgtgaagctgatcccctgtacagctgccatgaatgtggagtattctgttccccct
gtctgcaaccccagggaacccatcacctttgacatggacattcgcttccagcaggtgagt
gaccccgtggctgtggagttcagtctgaacacgcagatgatcctgctgtccaagaggtcc
ctctggctgtcggacggctccatgggcttcggtcaggagagcgacgccgccttctcagag
ggtgaaacgatctatgggagggtcatggttgaccctgtgcagaacctgggtgactctttc
cactgcagcattgagaaagtgtttctgtgcactggagccgacgggtacgtgcccaagtac
aaccccaccaagtctgagtttggatgcctggcagactccccaaccctcctctacagattc
aagatcattgataaagcccagcccgatacccaggccaggtcgtttggagacgtgcccttc
aacgccctcttggcagtggatgacccctcagcactgaccctggtcaaacagccaggctcc
gatggcttcagggtggactcggacgccatgttccaggtggcagccgggagagagtggtac
atccacaccatctacaccgtgcgctccaaagagaacacccaccgtggcatcggcaaaagg
agcctggagtaccactcggtcgtgtcgggcgacaacccgccggctctgcactcccgctcc
aggagggacgccggcgaggtgcccgccctggccgagaacatcggcaccgacaacaaccgg
ggcaccaacatcatgcacatcgccctggaccgcagccgccggcgggcgagcagcggggac
gaggccctggaggacggcgtgctgccccgcgagcggagcagcaagcgcggggaggaggac
gccgtgacggtggtgggcgccctggtgggcctcctgctcaccgtgctgctggcggtggtg
ctggcgctcctgctgcgctcccgtcagaaaggggccaagaaggcgcccaagccctcgggc
agcatgcagccggtgatggtgacagacaagtcctacgacagcactgacagttcagaggtg
tga
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integrated database retrieval system
