Clupea harengus (Atlantic herring): 105895447
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Entry
105895447 CDS
T09045
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04382
Cornified envelope formation
char04510
Focal adhesion
char04512
ECM-receptor interaction
char04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105895447 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
105895447 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
105895447 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
105895447 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
char04147
]
105895447 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
char00536
]
105895447 (col4a5)
Exosome [BR:
char04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
105895447 (col4a5)
Glycosaminoglycan binding proteins [BR:
char00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105895447 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
105895447
NCBI-ProteinID:
XP_031441440
UniProt:
A0A6P8H2M7
LinkDB
All DBs
Position
18:complement(1091965..1136642)
Genome browser
AA seq
1688 aa
AA seq
DB search
MSKNFKILQNLAVGLLFITLCLWVQDSESAACHGCTGSKCDCSNVKGDKGDRGLPGLQGQ
PGVPGFPGPEGPIGPRGEKGDDGPTGSSGPKGIRGPPGLPGFPGTPGIPGLPGQDGPPGP
RGTAGCNGTKGDRGFQGTSGLPGIEGQPGPPGFPGQKGEPGELIPLDRFGTKGDIGPPGL
PGPRGISGPSGLPGPVGPTGPRGYEGRPGPPGLQGPKGNMGLNFQGPKGDKGEQGPSGPP
GPPGQVGELQSTGQTTFQQGEKGDRGPPGPPGVSGVPGPPGVSGGQKGDKGESGEPGKRG
KSGKDGDPGPAGYPGGKGDPGSPGLPGRDGESGEKGDRGYPGPPGQVVTGPTSNAVGQKG
DRGFPGNPGRKGDRGPAGLSGPPGTPGAPGIGEPGTPGRPGFPGERGQKGEEGQVGIGLP
GPPGRNGQPGLSGPPGPPGPPGTSSNTGGCADGAPGLPGSQGDRGYPGETGQKGAKGDTC
VNCFSNGGGLPGPAGPPGAPGLSGAPGLPGSKGERGYPGGPGLPGSAGTPGLQGGAGYPG
EKGDPGDAISVSGVTGEKGDTGFPGPAGLPGLDGRPGRDGGPGAPGPKGSPGSLQVQGQI
GPPGEPGTPGPPGDRGSPGSPGFGPQGPLGEKGIQGVSGRSGSPGAPGPKGEPGRTIAEK
GTQGAPGRDGEPGLPGGPGTSGSPGQPGFPGLSGAKGDPGLPGIGLPGPPGPKGFPGGPG
SPGTSGSPGRPGLDGLPGTPGTSGSKGEPGYGSPGPQGPPGFPGGKGFPGSKGDPGFPGN
PGGPGRPGLNGGPGSKGDSGIPGLPGARGPAGSPAFGVQGSPGPPGSSGPMGSPGFPGAK
GEAGIPGRPGLDIPGLPGDRGSPGLPGSSGPVGSSGPPGGPGRDGLPGLPGQKGDMGVMG
PPGPLGTPGNPGGPGYNGPKGQDGYSGRPGSPGGPGFKGDKGDAGIPGAPGPAIPPALLK
GGKGDPGFPGTGGTPGQKGISGIPGDAGIPGQDGRPGVPGPPGPKGDPGFPGGPGGPGAS
GGKGAMGEMGFPGPSGIKGGPGQPGASGRPGSPGSSGYPGAKGDAGAPGFGAPGSSGPKG
DAGTPGYPGSPGAKGQAGSPGSAGFPGGPGAKGDAGLPGFQGTPGIPGPKGLDGSPGSPG
INGPPGRPGEGGRPGSSGYPGEKGQAGRDGIPGPDGLKGDPGPPGFGTPGSPGLPGFPGP
KGDIGLPGSSGSPGYPGPKGDSGFPGLPGGPGSTGAPGPSGVTVQGPKGNPGLPGAPGRL
GPEGLPGAPGPEGPRGPPGSGGVKGEIGFPGTPGNPGFPGQKGEYGPAGLPGGPGSPGFP
GPKGDLGLPGVPGFPGPKGQLGTGGTPGPPGDSGNPGLTGPPGDPGVAPTPIVLKGEPGP
PGNPGLPGNIGAPGPSGLEGLSGPPGEAGGPGPEGPPGFSGPPGRKGAIGPAGQPGSRGY
PGPPGSDGLQGQPGQPGPGSVAHGFLITRHSQSTDVPSCPGGTSLIYDGYSLLYVQGNER
AHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGQSI
QPFISRCSVCEAPAMVIAVHSQTIQIPSCPQTWEPLWIGYSFMMHTSAGAEGSGQALASP
GSCLEEFRSSPFIECHGRGTCNYYGNSYSFWLATVDINDMFRKPQSETLKAGNLQTRVSR
CVVCMKRT
NT seq
5067 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaaactttaagattctgcaaaacctcgctgtcggtctgctgttcataaccctt
tgcttatgggttcaggattcagaatcagcggcatgccatggctgcactggatcaaagtgt
gactgtagtaacgtgaaaggagataagggtgacagggggcttccaggcctacagggccag
ccaggggtacctggattcccaggaccagaggggcctattggacctcgtggagagaaggga
gatgatggacctacaggatcaagcggtcccaaaggaatacgaggccctcctggactacca
ggattccccgggacaccaggaattcccggccttccagggcaggatggaccccctggacct
agaggaactgcaggctgtaatggaacgaagggtgacagaggattccaaggaacttcaggc
ctcccaggcatagagggccagccaggccccccaggattcccaggccaaaagggtgaaccc
ggtgaattgattccccttgaccgttttggaacaaaaggtgatattggtccacctggcctg
ccaggtcctcgagggatttcaggaccttcaggactgccaggacctgttggtcccactggc
cctagaggttatgagggtcgtcccgggcctccaggtctccagggaccaaagggaaacatg
ggactgaacttccaagggccgaagggagacaagggtgagcaaggaccctcagggccacca
ggaccgcctggacaggtcggagagctgcagagcaccgggcaaactacattccaacaggga
gagaagggtgaccgtggcccacctggccctcctggagtttctggagtgcctggaccacct
ggagtctctggaggacagaaaggagacaaaggagaatctggtgaacctggtaaaaggggg
aaatctggaaaagatggtgacccgggtcctgctggatatcctggtggaaaaggagaccct
ggttcccccggactgcctggtcgtgatggcgaaagtggggagaaaggagaccgtggctac
ccggggcctccagggcaggtggtgacaggacccacgtcaaatgcagtaggccagaaagga
gaccgtggattccctggaaatcctggaagaaaaggagacagagggccagcaggtttatct
ggaccccccgggacccccggcgcaccaggtattggggagccaggtacccctggtagacca
ggcttccctggggagagaggtcagaaaggtgaggagggacaagtaggaattggtttgcca
gggccacctggcagaaatggacaaccaggcttatcaggtcctcctggaccaccaggtccc
ccaggaacatcttctaatactggtggctgtgccgacggtgctccgggtctacctggctca
cagggagatcgtggatacccaggagagactgggcagaaaggtgcaaagggtgacacatgt
gtcaattgtttctctaatggaggaggcctccccggacctgcaggaccacctggtgcacca
ggactctcaggtgctcctggattaccagggtctaaaggtgaaagaggataccctggagga
ccaggacttccaggatctgctggtacacctgggctccagggtggagctgggtatcctggg
gagaagggggatcctggtgacgcgatatctgtatctggtgtaacgggcgagaaaggagac
acaggtttccctggtcctgctggcttacctggtttggatggcagacctggacgtgacgga
ggccctggtgcacctggtcccaaaggatctcctggctctttacaggttcagggacagatt
ggtccccctggagagccgggcacaccaggtcctccgggtgacaggggttcacctggatca
ccaggatttggaccacaaggacctctaggagagaagggtatccagggagtgtcaggaaga
tcaggatcccctggtgcaccagggccaaaaggcgaacctggccgaaccattgcagagaaa
ggcactcaaggggcaccgggcagagacggagaacctggtctaccaggaggtccaggcaca
tcaggttcaccagggcaaccaggtttcccagggttatctggtgcaaaaggagatccaggt
cttcctggtattggcttacctggacctcctggacctaaaggtttccctggcggtcctggg
agtccagggacatctggttctccagggcgacctggtttggatgggctccctggtaccccg
ggaacatctggatcaaagggagagccaggttatggttcaccaggcccacagggacctcct
ggtttcccgggtggaaaaggatttcccggatctaagggagaccctggttttccaggaaac
ccaggaggtcctgggcgtccagggttaaacggaggccctggctctaaaggtgattctggt
attcctggtttacctggagcccgtggccctgcaggcagccctgcttttggtgtacaaggg
tcaccaggaccgcctggatcttctgggcccatgggttccccaggattcccaggtgcaaaa
ggcgaagcaggtattcctggccgcccgggactggatattccagggttgccaggagacaga
ggtagtcctggcctccctggatcttctggacctgttggctcatcaggcccacctggtgga
cccggtagagatggacttcctggacttcctggtcagaaaggagacatgggtgtgatgggc
ccgccaggacctttgggtacccctggtaatccaggtggaccaggatacaacggtccaaaa
ggtcaagatggttattctgggagaccaggcagtcccggtggacctggattcaaaggagat
aagggtgacgctggtatccctggcgctcctggtcccgccatacctccagctcttctgaaa
ggaggaaaaggagacccaggtttcccaggtacgggaggtactccaggtcagaagggtatc
tctggaattccaggggacgctggaattccagggcaggatggacgaccaggagttcctgga
cctccaggtcccaaaggagatccaggatttcctggaggccctggtggccctggcgcttca
ggtggaaagggagccatgggtgaaatgggattccctggaccctctggaattaaaggaggt
cccggtcaaccaggagcctcaggaagacctggatcacctggatcatcaggatatccagga
gctaagggggatgccggtgctccaggatttggggcaccaggaagttcaggacccaagggt
gacgctggaacacccggctatcctggaagcccaggagccaaaggccaagcaggttctcca
ggctctgcaggattccctggtggccccggagctaagggggacgcagggctgccaggattt
caaggaacacccggtattcctggtccaaagggtctagatggatcccctggttctccgggt
atcaatggacctcctggtagacctggagaaggaggtcgcccaggatcatcaggttatcct
ggagaaaaaggtcaagctggccgtgatggaatcccaggaccagatggattgaaaggagat
ccaggtcctcctggatttggaacccctggttccccaggtctgccaggattcccaggtcct
aaaggagatattggccttcctggttcttcaggaagtcctggttaccctggaccaaagggt
gactcaggattcccggggttgcctggaggtcctggcagtaccggggcccctggcccttca
ggtgttactgtgcaaggacccaaaggtaacccaggtcttcctggtgctcctggacgactc
ggtcctgaaggtctaccaggtgcccctggtcccgaaggcccacgtggtccccctggcagt
ggaggtgttaagggagagatcggctttcctggcacccctgggaacccaggctttcctggg
cagaagggcgagtatggccctgctggattgccgggaggtccgggtagcccaggattccct
ggaccgaaaggagacctcggacttcctggtgtcccaggattcccaggacctaaaggccag
ctcggtactggtggtacccctggtcctcctggtgactctggtaacccaggtcttactgga
cccccaggtgacccaggtgtggctccaacccctatcgtattgaagggagagcctggtccc
cctggcaaccctggtctgcccggcaacataggggcccctggtccctcaggattggaaggc
ttgtcaggtccacctggagaagctggaggccctggtccagaggggcccccaggattcagt
ggccctcctggaaggaaaggagctattggaccagcaggacagccaggctcgcgtggttac
cccggtccccccggctctgatggcctgcaaggacaacctggtcagccaggtccaggatca
gtagcacatggcttcctgatcacacgccacagtcagtctacagacgtgccttcttgcccc
ggtggcaccagtctcatctacgatggctactccctactgtatgtgcagggcaatgagcgg
gcccacggacaagatctaggtacggctggaagctgtttgaggcgcttcagcaccatgccc
ttcatgttctgcaacatcaataacgtctgcaacttcgcctctcgtaacgactactcctac
tggctgtccactccggagccaatgcccatgagcatggcccccatcactggacagagcatt
cagcctttcatcagcaggtgttctgtttgtgaagccccagctatggtgattgctgtgcac
agccagaccatccagattccttcctgcccccagacttgggagcccctgtggatcggctac
tctttcatgatgcacaccagtgcgggagcagaggggtccggtcaggccctggcctctcct
ggctcttgtctggaggagttccgctcctcacccttcatcgagtgccacgggcgaggcacc
tgcaactactacggcaactcctacagcttctggttggccacggtggatattaatgacatg
ttcaggaagccacagtccgaaacactgaaagcaggcaacctgcagacgcgtgtgagccgc
tgcgtggtgtgtatgaagaggacgtaa
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integrated database retrieval system
