Clupea harengus (Atlantic herring): 105895529
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Entry
105895529 CDS
T09045
Symbol
thoc5
Name
(RefSeq) THO complex subunit 5 homolog
KO
K13174
THO complex subunit 5
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105895529 (thoc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105895529 (thoc5)
03041 Spliceosome [BR:
char03041
]
105895529 (thoc5)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
105895529 (thoc5)
Spliceosome [BR:
char03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
105895529 (thoc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
RWD
DUF2542
Motif
Other DBs
NCBI-GeneID:
105895529
NCBI-ProteinID:
XP_031441117
Ensembl:
ENSCHAG00000021874
UniProt:
A0A6P8H055
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All DBs
Position
18:3221449..3228945
Genome browser
AA seq
516 aa
AA seq
DB search
EAPSEISRPHLTKDDPHQLTLARLDWELEQRKRLAEQYKTSLASKEKILKGIEVKKEYLG
NLRPGLQAIMQASLPLQEYLSMPFEHVQKQTEVARHLPPPLYVLLVQASAYGQACDKNLS
VSISGDVDEAKALSKPPEDSQDDESDSDAEEEQNTKRRRPTVGGQLDDKRKEMLKRHPLS
LCIDLKCKDGSVLHLFFYYLMNLNILTVKAKVSTSSHLTAVVSAGELLNSDTLLNCLYTS
DQGKETPNPANRYQFDKVGILTFSDYVGDLGHPYLWVQSLGGLQFPSDNPENVVMGSKLS
ASHMERTVKLLRSRLQSRLALHKQFISLEHSVVPVSAECQDLFPAKVISRLARWNAITYP
EFEEMPMVQHVLKAGLAHETDLFFMAVVERGTARLQATVVLNPRYPDVTPLFSISLLWKG
ERSGLTDDNLRAIESEVNVFRAELQGPRPGHQLLTNQLQRLCLCLDVYLETESQVCDGSE
GPREFPREKMCLRTARGPNRLKPFKYNHPQGFFSHR
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
gaagccccgtctgagatctctcgtccgcacctcactaaagacgatcctcatcagctcaca
ctggcccgcctggactgggaacttgagcagagaaagaggttggcagagcaatataagaca
tctcttgccagcaaggagaaaatcctaaagggaatcgaggtgaagaaagaatacctgggc
aaccttcgacctggactccaggcaatcatgcaggcctctctccctctccaagagtattta
tccatgccctttgagcatgtgcagaagcagactgaagtggcacgccacctgcctccacct
ctctatgtgctgctggtgcaggccagtgcttacggccaagcctgtgataagaacctgtct
gtttccattagtggggatgtggatgaagccaaagcactctctaagcccccagaggactca
caggatgatgaaagcgattcagacgctgaagaggagcagaacaccaaacggcggaggcca
actgttggcgggcagctggacgataaacggaaagagatgctgaagcgtcaccctctgtca
ctctgcatagacctcaagtgcaaagacggaagtgtgttgcatctgttcttttactacctg
atgaacctcaacatcttgactgtgaaggccaaagtgtcaacctcctcccacctgactgct
gtggtcagtgccggggagttgttgaactcagacacactgttgaactgcctctacacatct
gatcagggcaaagaaacaccaaaccctgccaaccgctaccagtttgacaaagttgggatt
cttactttctcagattatgtgggggatttgggtcacccttacctttgggtgcagagtcta
ggtggacttcagtttcccagcgacaaccctgagaatgttgtgatggggagcaaactgagc
gccagtcacatggagcgcaccgtgaagctgctgagaagccgcctgcagtctcgcctggcc
ctccacaagcagttcatctcactggagcacagtgtggtgcctgtgtctgctgagtgccag
gacctcttccctgccaaagtcatctcccgtctcgctcgctggaatgccatcacctacccg
gagtttgaggagatgccgatggtgcagcatgtgctgaaggcaggcctggctcatgagacg
gatctcttcttcatggcggtggtggaaagaggaacagcccgcctgcaggcaaccgtggtg
ctgaacccccgctaccccgacgtcacgccgctcttctccatctctctgctgtggaaggga
gagcgctctggactcacagacgacaacctgcgggccattgagagtgaggtcaatgtcttc
agggcggagcttcaggggccccgccctggccaccagctgctgaccaatcagctccagcgt
ctgtgcctgtgcctggatgtgtacctggagacagagagtcaggtgtgcgatgggtcggaa
ggacccagagagttccccagagagaagatgtgcttacggacggccaggggtccaaatcgt
ctgaaacccttcaagtacaaccatcctcagggcttctttagccatcgttga
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