Clupea harengus (Atlantic herring): 105895588
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Entry
105895588 CDS
T09045
Symbol
sympk
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03015
mRNA surveillance pathway
char04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105895588 (sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
105895588 (sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
char03021
]
105895588 (sympk)
03019 Messenger RNA biogenesis [BR:
char03019
]
105895588 (sympk)
Transcription machinery [BR:
char03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105895588 (sympk)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
105895588 (sympk)
U7-dependent histone pre-mRNA processing factors
105895588 (sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Cnd1
Adaptin_N
CoV_NSP8
Motif
Other DBs
NCBI-GeneID:
105895588
NCBI-ProteinID:
XP_031420102
Ensembl:
ENSCHAG00000010990
UniProt:
A0A6P8FAA4
LinkDB
All DBs
Position
3:3427028..3436702
Genome browser
AA seq
1252 aa
AA seq
DB search
MASGSHRPELRSGTASRSVSGEEDIAIDMTTSEKVVDLLNQAALRTTENKLVDLKQVQEL
IINKDPSLLDNFLDEIIAFQTDKSMEVRKFVIGFIEEACKRDNELLLKLIANLNMLLKDE
SVNVQKKAILTLTQLYKVALQWLMRSKVVSEMQEACWDMVTQMKEDILAMLDSDNDGIRT
HAIKLTESVIIALSPRTPDSDVPKKQEGDISLDKIPRDHSYIRYDTLCEEGKAALDKLLK
FMVHPAISSINLTTALGTLATLARQRPMVMSEVVQAYETLHANLPPTLAKSQVSSVRKNL
KLHLVAVLRHPSSLEFLAQISTLLLDLGMNQNEINRCTPAPRDQRKRPHMEAFAEGKKKI
KMEPTLIEDDEDKEEPAPALAPKPVATPANQSAIDVTADFLFPLLSPENVANLVLISMVY
LPNVMPASFQATYTPVESAGTDAQIQHLARLMATQITAAGIGPGVEQLKAREEEQQQPGK
EAGPGEGPSEELASGKDLIIKRKVSLVSHGQAISVLGGYAGKIPAKAEDVPQAKTLPQPI
VLSALAKTASSSGRKKVFRLADVVQPLTELQMTKLTNLSVQRILKSEKAIARSGMAHVRV
KLLARLATQFEGAMKRDMLTFILDDIRSRSDLAFALLYQEYNIYLGQQAGASLDNYEYCL
FTLLSGLQEKPEQRDGLFTKLVLEAPLITESALDVIRRYCEDETRVYLGMTTLKELILKR
PSRQFQYLHVLLDLSSHEKETVRSNALSFIKRMYDKDQLRDYIERFALNYMQLLVHPNPP
SMFFGADKDIEVASPWTEETVMQCLYLYLALLPLNHKLVHELAAVYTEAIADIKRSVLRV
IEQPIRGMGMNSPELLLLVETCPKGAETLVTRCLNILTEKVSPSPELVERVRDLYHKRVA
DIRFLIPVINGLEKTEVIQALPKLIKLNPTVVKEVFNRLLCAQHSEGGSSVSPVTPSELL
IALHNIDSTKCDMKSIIKATNLCFAEKNVYTSEVLAVVMQQLMDQSPLPMLLMRTVLQSL
TMYPRLGGFVMNILSRLITKKVWKYPRVWEGFVRCCQRTKPQSFSVLLQLPAPQLSSMFE
RCPEMREPLLQHVHSLTPHQQAHIPASIMTVLEAGSKEPEPEPEPEPVEPMEDQDVHTQP
APIKVEQPEEAPVVVQMPEPVLPQYPPPNTEEAEPQMQTTTSAFSPQEEPAEPIPQQEEV
TEQEQCASPLPAEQEAEHPTEEALPEHSDEAEQPNESSEENVMETDTGAVDE
NT seq
3759 nt
NT seq
+upstream
nt +downstream
nt
atggcctcaggtagccacagacctgagctgaggtccggtacagcatcccgttctgtcagt
ggagaggaggacattgctatagatatgaccaccagtgaaaaggttgtggatcttctgaac
caagctgctctgagaactacagaaaataaactcgtagacctgaaacaggtccaggaactt
atcataaataaggatccctcactgcttgacaactttcttgatgagataatagcgtttcag
acagataaatctatggaagtacggaaatttgtcattggcttcatagaagaagcatgcaaa
agggacaatgagcttctgttgaagcttatagccaatctgaatatgctactgaaagatgaa
agtgtgaacgtacagaagaaagccattcttacacttactcaactttataaagtggctctt
cagtggctgatgcggtccaaggtggtgtcagaaatgcaggaggcctgttgggacatggtc
actcagatgaaggaagatattctagcgatgctggactccgacaacgatggaatacgaacc
catgccatcaaactcacagagtcagtgattatcgccctgtcaccacgaacaccagactct
gacgtccccaagaaacaagaaggagatatcagcctggacaaaatccctcgagaccattct
tacattcgctatgatactctttgcgaggaaggcaaggcagcgctggataagctgctgaag
ttcatggtccaccctgcgatctccagcatcaacctgaccactgctctgggcactctggcc
accctggcgcggcagcggcccatggtcatgtccgaggtggtgcaggcgtacgagactctg
cacgctaacttgcccccaactctggccaagtcccaggtgagtagtgtccgtaagaacctg
aagctccacctggtggccgtgctccgtcacccctccagcctggagttcctggcccagatc
agcacgctgctgctggacctgggaatgaaccagaacgaaatcaaccgctgcacgcccgcc
cctcgagaccagcgcaagagaccccatatggaagccttcgccgagggcaagaagaagatc
aagatggagcccacgctgatcgaggatgatgaggataaagaggagcctgccccagccctc
gctcccaagcctgttgccacgccggcaaaccagtctgccatcgatgtcaccgcagacttc
ctgtttcccctgctctctccagaaaatgttgccaatctggtgctgatcagcatggtgtac
ctgcccaacgtcatgccagcctccttccaggccacatacactcccgtcgagtccgcaggc
acagatgctcagatccaacatctggccagactgatggccacgcagattacagccgcagga
atcggaccaggcgtggagcagctcaaggctcgggaggaggagcagcagcagcctggaaag
gaggctgggccgggtgaggggccgtcagaggagctggccagtgggaaagacctcatcatc
aagcgcaaagtgtccctcgtgtcccacggtcaggccatctcagtgctcgggggctacgca
gggaagatccccgccaaggctgaggatgttccccaggccaagacactaccacagcccatt
gtgctctctgccctggccaagacagccagctccagtgggcgtaagaaagtgttccgattg
gctgacgtggttcagcccttgactgagctccagatgacaaagttgaccaacttgtcggtc
cagcgcattctcaagtcggagaaagccatcgcacgcagtggaatggcccatgtgcgagtg
aagttgctagcccgtttggcgacccagtttgaaggggcgatgaagcgggacatgctcacg
ttcatcctggatgacatccggagcaggagcgacctggcctttgctctcctgtatcaggag
tacaacatctacctgggccagcaggcgggcgcctctctggacaactacgagtactgcctg
ttcaccctgctgtcaggactgcaggagaaaccagagcagagagatggactgttcactaag
ctggtactggaagcgcccctcatcacggaatctgcgctggacgtgattcggcggtactgt
gaggatgagactcgggtgtacctgggtatgaccaccctgaaggaactcatcttgaagcgc
ccctccaggcagttccagtacctgcacgtgttactggacctcagctcgcatgagaaggaa
acggtgcggtccaatgccctgtcctttatcaagcgcatgtatgacaaggaccagctgagg
gattacattgagaggtttgcactgaactacatgcagctactggttcaccccaacccaccc
tccatgttcttcggagcagacaaggacatagaggtggcgtccccctggacagaggagacg
gtcatgcagtgtctctacctgtatctggccctgctgcccctcaaccacaagctggtgcac
gagctggctgccgtctacaccgaggcaatagcagacatcaagcggagcgttttgcgagtg
atagagcagcctattcgaggaatgggaatgaactctcctgaactgctgctgttggtggaa
acctgtccaaagggggcggagactctggtcacccgctgcctaaacatactcactgaaaaa
gtgtcaccgtctccagagctggtggagagagtgagggacctctatcacaaacgagtggca
gacatccgcttcttgatacccgtcatcaatggacttgaaaagacggaggttattcaggcc
ctgcctaaactcatcaaactcaaccccactgtggtgaaggaggtcttcaaccgtctcctt
tgtgcacagcacagtgaaggtggatcctcagtgtctccagtcacgcctagtgagctcctc
attgccctgcacaacatcgattcaactaagtgtgacatgaagtccatcatcaaagccaca
aacctgtgctttgcggagaagaacgtgtacacgtcggaggtgctggctgtggtcatgcag
cagctgatggaccagagccctctgcccatgctgctcatgcgcaccgtcctgcagtccctc
accatgtacccacggctgggcggcttcgtcatgaacatcctgtcccgcctcatcaccaag
aaggtgtggaagtacccgcgggtgtgggagggctttgtgcggtgttgccagcgtaccaaa
ccgcagtcgttcagcgtgctcctgcagctgcccgcgccccagctcagcagcatgttcgag
cgctgccctgagatgagggagcctctgctgcagcacgtgcactccttaacgccacaccag
caagctcacataccagcttcaataatgactgttctagaagccggcagcaaagaaccggaa
cccgaacccgaaccggaacctgtagaacctatggaggaccaagatgtacatacacaacct
gcccccatcaaagtggaacaaccagaagaagcccccgtggtggtgcagatgccagagcct
gtccttcctcagtacccccctccaaacacagaggaggcagagccacagatgcagaccacc
acctcagccttttctccccaggaagaacccgcagagcccatcccacagcaggaggaggtc
acggagcaggaacagtgcgcctccccattacctgcagaacaggaagcagaacatccaact
gaggaagcacttccagagcattcagatgaggccgagcaaccaaacgaatcatctgaggaa
aacgtcatggaaacagatactggcgctgtcgatgaatga
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integrated database retrieval system
