Clupea harengus (Atlantic herring): 105895714
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Entry
105895714 CDS
T09045
Symbol
shprh
Name
(RefSeq) E3 ubiquitin-protein ligase SHPRH isoform X1
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
105895714 (shprh)
Enzymes [BR:
char01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105895714 (shprh)
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
105895714 (shprh)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-1st
SHPRH_helical-2nd
Linker_histone
Helicase_C
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-C3HC4_3
zf-RING_5
PHD
TPR_10
Motif
Other DBs
NCBI-GeneID:
105895714
NCBI-ProteinID:
XP_012677845
Ensembl:
ENSCHAG00000008680
UniProt:
A0A6P3VQT7
LinkDB
All DBs
Position
14:complement(25097799..25116001)
Genome browser
AA seq
1688 aa
AA seq
DB search
MSNKRKKAPPVKVDDEAKKRLNWNMHEDRRNELESLPTQSSDVTADCIPVPSEEPSCSKT
FLSIVEEPELVLSKEGLVSLSYIPSASEETPDPCINYTPQIELGSEPSSSANSATSDSVV
LPLIAVSDLDETWRVLIGEFNLRAQFPLVVDNSQQWTLQRTGGRLCLCASGTQEVGDCNM
EVPSLECISPVGGSFGRVQLEELDWLQKRRIIELSVQLEENYVKLPVYLLEAGLGHPASL
SEGSGRMKKAHQLIQKLMEHFYDFIIPEVMDDQNEDSDIDLERQNVEELYDCVRHHHQHQ
HEAQGEGLDLQHEALVPVLRPYQSQAVNWMLRREKYNRSVSADVPSLHFLWREVVTLCGK
KLYYNIYTGCLILEFPQAGPDWPGGILADEMGLGKTVEVLALILFHTRQGLENTAPCLPE
GIKVNYFVPPPPLEKENGTPRKREPQPKERISYPAVRVMILTAIKEMKVGKGASINAIFA
YLRTMFGYDPIKNRSHIKKSLAKLIGEELVEQVKGRGLAGSFKFGKKYKATQKKTTPSKQ
AKPQIPSGDITPRRTSRRRSAQEKGAAVTSDLSEGMDTDAVPVGEVQDINQELEPTGEHA
NVPPAGSAEEHPSEEDKEEQVKTSAKLEGQADPQALAEEECRPPGEEVKDFPQPSSVPEP
DYHFECICGETGLLDYKARVQCLHCLLWQHADCVNYKQESLDTTPFYCPHCLVAMPPVPT
GATLIISPSSICHQWVEEINRHIRSSSLRVLVYQGVKRHGFIQPHVLAEQEVVITTYDVL
RTELNYVDLPHSNSEDGRRFRTHKRYMAVPSPLVAVEWWRVCLDEAQMVECTTAKAAEMA
LRLSSVNRWCVSGTPVQRGLEDLYGLVLFLGVDPYWVKHWWEQLLYRPYRRGNTEPLYRL
MGRLLWRSAKKDVIDQIQIPPQTEEIHWLRFSPVESHFYQRQHEVCSQDALHKLRKISDW
SLRLSSLDRRTVSTILCPLLRLRQACCHPQAVRGEFLPFQKSTMTMEELLKSLQKKCRVE
CEEAHRQLVCALNGLAGIHIIRDEFGEAVEMYRDVLRSSEEHKGRLKTDSLQRLHATHNL
MELLSAKHDGIPPTLRDDRLKEEAEQLRQHYMTKSNSEVSEAQQNLQPVLQNIKELKRKV
NLRSPWWMDVIAQAIKYSMDDELVQRIQNELTCSYKQEASKVSMADKFRDGRGLQYLLTT
QVDDLLKSQKVVQDAVKRLEGTPSQAIIEETTMCHLRPVRLPLNNCVFCKADELFTDYES
KLFSHTVKGQTAIFEEMIEDEEGLVDDRLPTTSRGLWAASETERALKAMLAFARARRLDA
QLLEDASTFMELFESWKKEYKVLHEYWMTLRDHVSAIDELGMATERLRVRLPDEPKQKVL
HIIEPHEVDQNRAKLLNDRAVAKSQLQKKLGQLLYLTNLEKTQDKSTGGLNPEPCPICAR
SLGQEWAVLTCGHCFCNECIAIIMEQYSVGSRRKAIKCAICRQTTSHTDISYVFTTQNDG
SGEDIPVKGSHSTKVEAVVRVLKKIQMADPGAKSLVFSTWQGVLDIIAKALFDNNMEFSQ
INGIHNFQKNLCAFKYEEKINILLLPLHTGSNGLNIIEATHVLLVEPILNPAHQLQAIGR
VHRIGQTKPTFVHRFLIRSTIEEKMQAMLKTAEKSHTATATMKHSEASVFTVADLAELFT
DDPQSLED
NT seq
5067 nt
NT seq
+upstream
nt +downstream
nt
atgagtaacaaaagaaaaaaagcaccaccggtcaaggtggatgacgaggcaaagaaaagg
ttgaactggaatatgcacgaagaccggaggaacgagcttgaatcgcttccgacacaaagt
tctgatgtgacagcagattgtattcccgtccctagtgaggaaccgagttgttctaaaact
tttctctctattgtagaagagccagagttggttctctctaaggaaggtcttgtaagtttg
agttatatcccttctgcaagtgaagagacacctgacccctgcatcaactatacaccacaa
attgagcttggttccgagccgagcagctcggcaaatagtgccacaagtgattctgttgtc
ctacccctaattgccgtctccgatttggatgagacctggagggtactaatcggagagttc
aatctccgcgcccagttcccgctggtggtggacaatagccagcagtggacacttcagagg
accggtggtagactgtgcttgtgtgcgtctggtactcaggaggttggagactgtaatatg
gaggttccgagcctggagtgcataagcccagtgggaggatctttcggcagggtacagctg
gaggagttggactggcttcagaagaggaggatcatcgagctcagtgtccaacttgaagag
aactatgttaagttgccagtgtatttgctggaggctggactaggccaccccgcctccctc
agcgaaggaagcggccgcatgaagaaggcacatcagctgatccagaaactcatggaacac
ttttatgacttcatcattccagaggtgatggacgaccagaacgaggacagcgacattgac
ctggagcgacagaatgtggaagagctgtacgattgtgtgcggcatcatcaccagcaccag
catgaagcgcagggcgagggcttagacctgcagcatgaggccctggtgcccgtgctccga
ccctaccagagccaggctgtcaactggatgctgaggcgagagaagtacaacaggagtgtc
tctgcagacgtaccatcgttgcatttcctgtggcgtgaagttgtgactctgtgtggaaag
aagctgtactacaacatctacacaggctgtctgatcctggagtttcctcaggcggggcct
gattggccgggcggtatcctggcggatgagatgggtctggggaagacggtggaagtgctt
gctctcattctgttccacacaagacagggcctagagaacactgccccctgtctccctgag
ggaattaaagtaaactactttgtgcctcccccgccactggagaaggaaaacggcacacca
cgcaagcgtgagccccaacccaaggagagaatctcttatcctgctgttcgtgtcatgatt
ctcaccgccatcaaagagatgaaggtgggcaagggagcctccatcaacgccatcttcgcc
tacctgcgcaccatgttcgggtacgaccccataaagaaccgcagccacatcaagaagagc
ctcgccaagctcatcggtgaagagctcgtggagcaggttaaaggtcgaggcctggccgga
tccttcaagttcgggaagaagtacaaggcgacacagaagaagacgacaccaagcaaacaa
gcaaagcctcagatccccagtggggacatcactcctcggagaacatcacgcaggcgctct
gctcaggagaagggtgcggccgtgacctctgacctctcagaaggaatggacacagacgca
gtgcctgtgggtgaagttcaggacatcaaccaggagctggagcccaccggtgaacatgcc
aacgtccctccagcagggagcgctgaagagcacccctctgaggaggacaaggaagagcag
gtgaagacctcagccaagctggaaggtcaagctgacccccaggctctggcggaagaggag
tgtcgaccccccggtgaagaagtgaaggactttccacagccctcctctgtccctgagcca
gactaccacttcgagtgcatctgcggggagacgggtctgcttgactacaaggcgcgtgtc
cagtgcctgcactgcctgctgtggcagcacgccgactgtgtcaactacaagcaggagagc
ctggacaccacgccgttctactgcccacactgcctggtggccatgccgcccgtgcccacc
ggcgccaccctcatcatctcgcccagctccatctgccaccagtgggtggaggagatcaac
cgccacatccgctcctcctcgctgcgcgtgctggtgtatcagggtgtaaagcgtcacggc
ttcatccagccgcacgtgctggccgagcaggaagtggtcatcaccacgtacgacgtgctg
cgcaccgagctcaactatgtggacctgccccacagcaacagcgaggacggccgccgcttc
cgcacgcacaagcgctacatggccgtgcccagccccctggtggccgtggagtggtggcgc
gtctgcctggacgaggcgcagatggttgagtgcaccactgccaaagctgctgagatggcc
ttgcgtctgtcctctgtgaaccgctggtgcgtgagcgggacgcctgtgcagaggggatta
gaagacctgtacggcctggtgctgtttctgggtgtggacccgtattgggtgaaacactgg
tgggagcagctgctgtaccgcccgtatcgccgtggaaacacggagcccctgtacagactc
atgggccgcttgctgtggcgctcggccaagaaggacgtgattgaccagatccagatcccc
cctcagacggaggagatccactggctgcgcttctcgcccgtggagagccacttctaccag
cggcagcacgaggtctgctcccaggatgcactgcacaagctgcgcaagatctctgactgg
tcgttgcgcctgagcagcctggaccgccgcaccgtcagcaccatcctgtgcccactgctc
cgtctgcgccaggcctgctgccacccgcaggccgtccgcggagagttcctgcccttccag
aagagcaccatgacgatggaggagctgctgaagtccctgcagaagaagtgccgtgtggag
tgtgaggaggcccacaggcagctggtgtgtgccctcaacggcctggctgggatccacatc
atcagagatgagtttggggaggccgtggagatgtacagagacgtgctgcggtcatcagag
gagcataaagggcgactgaaaacagactccttacagagactccacgccacgcacaacctg
atggagctgctcagtgcaaagcatgatgggatacccccaactcttcgggatgaccgacta
aaagaggaggcagagcaactgaggcaacactacatgacgaaatccaactcagaggtgtct
gaagcacagcagaacctgcagcccgtgcttcagaacatcaaagagctcaaacgcaaagtg
aacctgcgctccccctggtggatggatgtcatagcgcaggccatcaagtactccatggac
gacgagctggtccagcgcatccagaatgagctcacctgcagctacaaacaggaagccagc
aaagtttccatggcagacaagttccgagatggtcgtggcctgcagtatctgctcaccacg
caggtcgatgacctcctgaagtcccagaaggtggtgcaggatgctgtcaagaggctggaa
ggcacgccctcgcaggccatcattgaggaaaccaccatgtgtcacctgaggcccgtccgt
ctgccactcaacaactgtgtgttctgcaaggctgacgagctcttcactgactacgagtcc
aagctgttttcgcacacggtcaaaggtcagacggccatctttgaggagatgatcgaggac
gaggagggcctggtagacgaccgcctgcccaccaccagccggggcctgtgggcggccagc
gagacggagcgagccctgaaggccatgctggcgttcgcccgcgcccgccgcctggacgcc
cagctgctggaggatgccagcaccttcatggagctctttgagtcctggaagaaggagtac
aaggtgttgcatgagtactggatgaccctgagggaccacgtgtcggccattgacgagctg
ggcatggccacggagaggctgcgcgtgcggctgcccgacgagcccaaacagaaggtcctg
cacatcatagagccacacgaggtggaccagaacagggccaagctgctgaatgaccgggca
gtggccaaatcccagctgcagaagaagcttggccagttactctacctcaccaacctagag
aagactcaggataaatccacaggggggctgaacccagaaccatgtcctatctgtgcccgt
tccctcggtcaagagtgggccgtgctgacctgtggccattgcttctgtaacgagtgcatc
gccatcatcatggagcagtacagcgtgggctcgcgccgcaaggccataaagtgtgccatc
tgcagacagaccacctcccacaccgacatctcctacgtgttcaccacccagaacgacggc
agcggagaggacatccccgtcaagggcagccactccaccaaggtggaggccgtggtcagg
gtcctgaagaagattcagatggcggacccaggagccaagtctttggtgttctccacgtgg
cagggggtgctggacatcatagccaaagcactgttcgacaacaatatggagttctcccag
atcaacggcatccacaattttcagaaaaacctgtgtgctttcaaatatgaggagaagatc
aacatcctgctgctgccactgcacacgggctccaatgggctcaacatcattgaggcaact
cacgtgctattggtagagcccatcctaaatcccgcccaccagctgcaggctattggccgt
gtccaccgcataggccagacaaaacctacctttgtgcacaggttcctcatcaggtccacc
atagaggagaagatgcaggccatgctcaagacggccgagaagagccacactgccaccgcc
accatgaagcactcggaagcgtccgtcttcactgtagctgacctggccgagctcttcacg
gatgatccacagagcctggaggactga
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integrated database retrieval system
