Clupea harengus (Atlantic herring): 105895758
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Entry
105895758 CDS
T09045
Symbol
stxbp5b
Name
(RefSeq) syntaxin-binding protein 5 isoform X3
KO
K08518
syntaxin-binding protein 5
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105895758 (stxbp5b)
Membrane trafficking [BR:
char04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
105895758 (stxbp5b)
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
105895758 (stxbp5b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LLGL
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
ANAPC4_WD40
Beta-prop_HPS5
WD40_Prp19
Beta-prop_RIG_2nd
WD40
WD40_WDHD1_1st
Beta-prop_IFT140_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR19_1st
Lgl_C
Beta-prop_NUP159_NUP214
EIF3I
Beta-prop_VPS8
Synaptobrevin
PEP5_VPS11_N
RAB3GAP2_N
WD40_like
Motif
Other DBs
NCBI-GeneID:
105895758
NCBI-ProteinID:
XP_012677896
Ensembl:
ENSCHAG00000010273
UniProt:
A0A6P3VPI7
LinkDB
All DBs
Position
14:25152483..25182293
Genome browser
AA seq
1149 aa
AA seq
DB search
MKKFNIRKVLDGLTAASSSSSSSHPGNRENDSIQENLQSEHFQLCKTVRHGFPYQPSAMA
FDPVQKILAIGTQSGALRLFGRAGVECYCQHESGSAIIQLQFLINEGALVSALADDSIHL
WNLRQKQPAVLHSLKFNRERITFLALPFQSKWLYVGTERGNIHTVNVESFTLSGYVIMWN
KAIELSSKSHPGPVVHISDNPMDEAKLLIGFECGIVVLWDLRTKKADYRYTYDEAIHSVA
WHHEGKQFICSHSDGTLTIWNIRAPAKPAQIITPHGKQPKDGKKPEPCKPILKVEYKTTR
VGDPFMVLFGGLSYDTVGRRACLTVMHGKSTAVLEMDYPIVDFLTLCETPYPNDVQEPYA
VVILLEKDLVLIDLAQIGYPIFENPYPLSLHESPVTCCEYFADCPAELIPALYSVGSRQK
RQGYSKKEWPISGGNWGQGTQSYPEIIITGHADGSIKFWDASAIMLQVLYKLKSAKVFEK
VRNKEDKPSTDIVDEDPFAIQILSWCPESRMLCVAGVSAHVIIYRFSKHEVTTEVVQLLE
VRMPYELNDVDSPEAAGEQTPSVSTPGASSSPQTALPPADTHPSTSSNSSDGPRDNVPCL
KVRCSPLKQSPGYQVDLVVQLLWVSGEPPQQITSLALNSAYGLVVFGNSNGLAVVDYFQK
TLLMNVGVQELYGSADPFQRQPRSPRKTRQPSGGPCDANDGSNASEDRCKSPTSGSTSPC
NSDEENKAQKFIDKMKSKSRRFSKTVSNDLAKMSRKLGTAPDQKQDSDAKDSSFSRSRSS
SVTSLEREAREVITAFHFCETMSRKGEAGPGPSLWVGTSQGSMLVLPLAVPASSELRMQQ
APAVSFGGTVTRLKGCVVTMATLDSTGAPLLPPYEVWYDPNLPDEREEKDRWKRRGPASP
PGGPEGAPETHYVVLCSEKQAEVLVLPSQHSAFKHNITEASFVLRADVVLMPAGSCIACF
CANGHIMTLSLPALRPLLDVNYLPLTDMRIARTFCFSNLGQALYLTSPTEIQRITYSQET
CDNLQEMLCELFTPVETPEAPNRGFFKGLFGGGAQSLDREDLFGEVAAGKASRSLAQHIP
GPGGMEGMKGAATGIMGDLARTRMALDERGQKLGELEERTAGMMHSADSFSKHAHDIMLK
CKDKKWYQL
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagtttaatatcagaaaggtgctagatggtttgacggccgcctcctcctcctca
tcatcatctcacccgggaaacagggaaaatgactcaattcaggagaacctgcagtcggag
catttccagctctgcaagaccgtgcgccatggcttcccttatcaaccctcagcaatggct
tttgaccctgtgcagaaaatccttgctatagggactcagagtggagctttgaggttgttt
gggcgagcaggtgtggagtgttactgccaacacgagagcggctcagccatcatccagctc
cagttcctcatcaatgagggggcactggtgagcgcgctggctgacgacagcatccactta
tggaacctgaggcagaagcaaccggcggtgctgcactcgctcaagttcaacagggaaagg
atcacgtttcttgccctgcccttccagagcaagtggctgtacgtcggcacggaacgaggg
aacatccacaccgtcaacgtggagtccttcaccctctcaggctacgtcatcatgtggaat
aaagccattgagctgtcctcaaagtcacaccccggccctgtagtacacatcagcgacaac
cccatggacgaggccaagctgctgattggctttgagtgtggcatcgttgtgttgtgggac
ctgaggaccaagaaagcagactaccgctatacctacgacgaggccatccactctgtcgcc
tggcatcacgagggcaagcagttcatctgcagccactcagacggcaccctgaccatctgg
aacatccgcgcgcctgccaaacctgcccagatcatcacacctcatggtaagcagcccaag
gatggcaagaagccagagccatgcaagcccatcctgaaggtggagtacaagaccacccga
gtaggggaccccttcatggtgctgttcgggggcctgtcctatgacacggtgggccgacgg
gcctgcctgacggtgatgcacgggaagagcacagccgtgctggagatggactaccccatc
gtggacttcctcacgctgtgtgaaacgccctacccaaacgatgtccaggagccctatgct
gtggtcatcctgctggagaaggacttggtgttgatcgacctggcgcaaatcgggtacccc
atctttgagaacccgtaccccctgtccctgcacgagtctccggtcacatgctgcgagtac
tttgccgactgcccggcagagctgatcccggccctgtactccgtgggctcccgacagaag
agacagggctacagtaaaaaggaatggcccataagtggtggtaactggggccaaggaact
cagagctatccagagatcataatcacaggacatgctgatgggtccatcaagttctgggac
gcctcagcaattatgctgcaggtactgtacaagctgaagtcggctaaagtgttcgagaag
gtgcgcaacaaggaggacaagccgagcacggacatcgtggacgaggacccgtttgccatc
cagatcctgtcgtggtgcccggagagtcgcatgctgtgtgtggcaggagtgtccgctcac
gtcatcatctaccgcttcagcaagcacgaggtcaccaccgaagtggtgcagctcctggag
gtgcgcatgccatacgagctgaacgatgtggactctccagaggcggcgggggagcagacc
ccttctgtgtccactccaggggcctcctctagcccccagacggcactgccccctgcggac
acacacccctccaccagcagcaactcctccgacggaccccgagataacgtgccctgcctc
aaggtgcgctgttcccctctcaagcagtctccaggctaccaggtggacctggtggtgcag
ctgctgtgggtcagcggggagcccccgcaacagatcaccagcctcgccctcaattctgca
tacggcctggtcgtctttggtaactccaacgggctggccgtggtggactacttccagaag
accctcctgatgaatgtgggcgtgcaggagctatacggctcagccgaccctttccagagg
cagccgcgctccccacgcaagacccggcagccgtctggaggcccctgcgatgctaacgac
ggctccaatgcctcagaggaccgctgcaaatctcccacctcaggctccacctctccctgc
aattctgacgaggagaacaaagcccaaaagttcatagataagatgaagtccaaaagcaga
cgcttttccaagacggtttccaatgacttagcgaagatgtcacggaaactaggcacggcc
cccgatcagaagcaggactctgatgcgaaggacagctcgttcagccgctcgcgcagctcc
agcgtgaccagcctggagcgggaggcgcgcgaggtcatcaccgccttccacttctgcgag
accatgagcaggaagggcgaggcggggcccgggcccagcctctgggtgggcacctcgcag
ggcagcatgctggtgctgccgctcgccgtgcccgccagcagcgagctccgcatgcagcag
gcacccgccgtgtccttcggcggcacagtgacgcgcctgaaaggctgtgtcgtcaccatg
gccaccctggactccaccggcgcccctctgctgcccccgtacgaggtgtggtacgacccc
aatctgccagacgagcgcgaggagaaggaccgctggaagcggcgtgggcccgcctctccc
cccggcggcccagagggggcgccagagacgcactacgtggtgctgtgctcagagaagcag
gccgaggtgctggtactgccgtcgcagcacagcgccttcaaacacaacatcaccgaggcc
tcgttcgtgctgcgcgctgacgtggtgctgatgcccgccggcagctgcatcgcctgcttt
tgcgccaatgggcacatcatgacactcagtctgcccgccttgcggcctctgttggatgtg
aactacctgcctttgacggacatgcgcatcgccagaaccttctgcttctccaacctgggc
caggctctgtacctcacctctcccacagagatacagcgcatcacctacagccaggaaacg
tgcgataacctgcaggagatgctgtgtgagctcttcaccccagtggagactccggaggcc
cctaacagaggcttcttcaagggtctgtttggaggaggggcccagtctctggacagagaa
gacctcttcggggaggtggcagcgggtaaggcctcacgcagcctggctcagcacatccct
gggcccgggggcatggagggcatgaagggcgcagcgacgggcataatgggggatctggcg
cgcacccggatggcgctggatgagagagggcagaaactgggcgagctggaggagcggacg
gccggcatgatgcacagtgcagattccttctccaaacacgcccacgatatcatgttgaag
tgcaaagataagaagtggtaccagctctga
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integrated database retrieval system
