KEGG   Clupea harengus (Atlantic herring): 105895947
Entry
105895947         CDS       T09045                                 
Symbol
wdr82
Name
(RefSeq) WD repeat-containing protein 82
  KO
K14962  COMPASS component SWD2
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:char00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    105895947 (wdr82)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:char03019]
    105895947 (wdr82)
   03036 Chromosome and associated proteins [BR:char03036]
    105895947 (wdr82)
Messenger RNA biogenesis [BR:char03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     105895947 (wdr82)
Chromosome and associated proteins [BR:char03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     105895947 (wdr82)
    COMPASS/SET1 complex (yeast)
     105895947 (wdr82)
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 ANAPC4_WD40 WDR55 EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_EML WD40_MABP1-WDR62_1st Beta-prop_SPT8 Beta-prop_WDR19_1st WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_WDR75_1st WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_NUP159_NUP214 Beta-prop_NWD2_C WD_LRWD1 Beta-prop_WDR35_TULP_N KNTC1_N Beta-prop_HPS5 VPS8_N MinC_C RMC1_N Beta-prop_LRRK2
Other DBs
NCBI-GeneID: 105895947
NCBI-ProteinID: XP_031424159
Ensembl: ENSCHAG00000022046
UniProt: A0A6P8FEW2
LinkDB
Position
5:complement(26111388..26115546)
AA seq 313 aa
MKLTDNVLRSFRVAKVFRENSDKINCFDFSSNGETVISSSDDDSIVLYDCQEGKPKRTLY
SKKYGVDLIRYTHAANTVVYSSNKIDDTIRYLSLHDNKYIRYFPGHNKRVVALSMSPVDD
TFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFD
KGPFATFKLPYERTCEWTGLKFSNDGKLILVSTNGGTLRLMDAFKGAVLHSFGGYNNSKA
VILEASFTPDSQFIMIGSEDGKIHVWNAESGMKVALLDGKHTGPVTCLQFNPKFMTFASA
CSNMAFWLPTIDD
NT seq 942 nt   +upstreamnt  +downstreamnt
atgaagctcacggacaatgtgttgcggagcttcagggtagctaaggtgtttcgagagaat
tcggacaaaatcaactgttttgacttcagttcgaatggggagacggtgatttcgagcagc
gatgatgactctatagtcttatatgactgccaggagggaaaaccaaagcgaacgttgtac
agcaagaagtatggagtggacctcatcagatacacacacgcagccaacaccgtcgtctac
agctccaacaaaattgatgacactattcggtatctgtcgctacatgacaacaagtacatt
cggtacttccctggacacaacaagagggtggtggcgctctccatgtcacctgtggatgac
accttcatctccggctcgctggataaaaccattcgactctgggacctccgctccccaaac
tgccagggcttgatgcacctacagggaaagccggtgtgctcgttcgatccagagggtttg
atcttcgcagcgggggtcaactctgagatggttaagctttatgacctgcgctcatttgac
aagggtccatttgccacgtttaagttgccctatgagcgcacgtgtgagtggaccggcctg
aagttcagtaatgacgggaagctgatcctggtctcgaccaatgggggaaccctgcgcctc
atggatgccttcaagggggctgttcttcattcttttgggggctacaacaacagcaaagcg
gtgattctggaggcttcgtttactcccgactctcagtttataatgatcggctctgaggat
gggaagatccacgtttggaatgcagagagtgggatgaaggtggcgttgctagacggcaaa
cacacgggacccgtcacgtgtctacagttcaaccccaagttcatgaccttcgctagtgcc
tgctccaacatggctttctggttacccaccatcgatgattga

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