Clupea harengus (Atlantic herring): 105896029
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Entry
105896029 CDS
T09045
Symbol
lamb1a
Name
(RefSeq) LOW QUALITY PROTEIN: laminin subunit beta-1a
KO
K05636
laminin, beta 1
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04510
Focal adhesion
char04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105896029 (lamb1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
105896029 (lamb1a)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
Folliculin_C
BNR_6
Motif
Other DBs
NCBI-GeneID:
105896029
NCBI-ProteinID:
XP_031419989
Ensembl:
ENSCHAG00000015221
UniProt:
A0A6P8F4Z5
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All DBs
Position
3:1296543..1321912
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AA seq
1781 aa
AA seq
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MFHIAVLLLMSAQALGQLPELGDVCTHGSCYPATGDLLIGRAHQLSATSTCGVVKPEPFC
IVSHLQDVKKCFVCDSTESYSEKMRHTTSHRIENVVTTFAPNRLKTWWQSENGVEHVTIQ
LNLEAEFHFTHLIMTFRTFRPAGMAIERSSDFGKTWQVYRYFAYDCETTFPLVSNGPMKK
VDEVICDSRYSDIEPSTEGEVIFRVLDPVFRIDDPYSPRIQNMLKITNLRVNFIRLHTLG
DNLLDPRSEIKEKYYYSLYDMVVRGNCFCYGHASECAPVEGVEETEGMVHGHCVCNHNTK
GLNCERCQDFYHDLPWKPAEGRNTHACKKCKCNHHSDTCHFDMAVFMASGNVTGGVCNEC
QHNTMGNNCEQCKPFFYQHHERDIRDPNICEPCNCDPVGSLNGGICDALTEVSTGLIAGQ
CRCKPNVEGERCDQCKQGHYGLSDDPQGCKPCTCNALGTVPGGSPCETDTGSCYCKRLVR
GRNCDQCMPQHWGLSNDMDGCRPCDCDLGGALNNDCSAETGQCQCREHMFGRSCEQVESG
FYFIGLDHYTYEAEDAKFGPGVTVVQRPHPLDRNPTWTGVGFVNVPEGAYLEFNIDNLPH
SMEYDVLIRYEPQLPEQWEEVLMTVIRPGVITADSRCANTMPEDDNQRSSLHPGSRYVVL
PRPVCLEAGLNYTVRLSLPLYSALSDIQSPYTLIDSIVLMPHCKNLDMFSGSEGGDLVNN
NAWDTFQRYRCLENSQGVVKTPMTDICKDYIFSVSALLHSGAKACQCDPMGSLSTVCDPN
GGQCQCRPNVMGRNCEKCAPATFLFGPSGCRACECNPQGSLHSFCHEAIGQCECVPGAYG
RQCDRCLPGHWGFPNCRPCTCNGHADQCDAHTGECLGCREQTTGHNCERCLTGYYGDAVL
GSGDHCRPCMCPDGPGSNRQFAGGCYKSPDAYQVFCVCSPGYKGARCDECAPGYYGNPHE
VGGQCLPCQCNGNIDMMDPGSCDASSGVCLKCLHHTEGQDCSRCKLGYHGNALTQSCRKC
ICNHQGTAQQSCPSLGDCHCDLSSGQCQCLPNVVGQHCDLCAPDTWNMASGTGCEDCACS
PEHSYGTSCNEITGQCSCKAGFGGRTCHECRELFWGNPEMKCHACDCDRRGIAEPQCNKA
TGHCVCVEGVSGPRCDTCARGYSGEFPNCVRCHQCFAEWDVIVGELTNQTHRLVQKVNTI
KASGITGPYQKTIDSFQKSASSIRNLLAQNPATQPLTEIQHLMEQATDLVRDMTNRLNLT
EEALSRSSLDNNVTDTKLEALKEDAHKLELTAKELLEHVEFVKNSDVRGATDSITKYFQQ
SVSAEARANASSSDPNSTVEQSATLRQTVEQRMNETGDEFKNRQEEHATRLDDLAGQLET
LSLAELSEKTCGVPSGSEACADSPCGGLSCMDAEGKRRCGGEGCDGLVGLASSARQKAKD
FEKDIVSAMEEVEKLSKLVSEAKVKADRAKVSAQGVLLKTNETKQRVDRSNEELRNLIKQ
IRDFLTQDGADLESIEAVANQVLEMQMPTTPAQLQNLTNEIRERVGSLSDVEDILNQSAA
DIQRAEGLLEQARKASKEATDVRDTAVIVKEALEQAEKAQNAATEAIKQATSDIEGTQDL
IVSVESETADSEFRLNNATQRLHHLEKGVALLKEKAHNTTSTAEKTDQDMKHVNQVADQV
KKDLDSDVKDKYSTVEGLITQKASGISDAKRRAQMLQQEAKDLLLQASDKLKLLKDLEKS
YEDNQKTMEDKANQLVDLEKAVRELLQEISHKVTVYSTCLF
NT seq
5346 nt
NT seq
+upstream
nt +downstream
nt
atgtttcatatagcggtgcttttattaatgagcgcccaagccctgggccaactgccggag
ctgggcgatgtctgcacacacgggagctgctaccctgccaccggcgatctccttatcgga
cgcgctcaccagctatcagccacctctacttgcggcgttgtcaaacccgaacctttctgt
atcgtcagtcacctgcaggatgtgaagaagtgttttgtctgtgattccaccgagtcctac
agcgagaagatgcggcacaccaccagtcacaggatcgagaatgtggtgacaacttttgcc
cccaaccgcctgaaaacctggtggcagtcagagaatggtgtggaacatgtaaccatccag
ctgaatctggaagccgagtttcactttacacatctcatcatgaccttcaggacgttccgt
cctgcaggtatggcgattgagcggtcttctgactttggaaagacctggcaagtataccgc
tactttgcctacgactgtgaaacaaccttcccattggtttccaacgggccaatgaagaaa
gtggatgaggtcatctgtgattcccgttactctgacatcgagccgtcaacagagggcgag
gtcatcttccgagttctggatcctgtattcaggattgatgatccatacagtccccgaatt
caaaatatgctgaagatcaccaacctcagagtcaacttcatccgacttcacacgctgggg
gacaacctgctggacccgcgcagcgagatcaaggagaagtactactactctctgtacgac
atggtggtcaggggaaactgtttctgctatggccatgcgtcggagtgcgcgcccgtagaa
ggggtggaggagacagagggcatggttcatggccactgtgtgtgcaaccacaacaccaag
gggttgaactgtgagcgatgccaagacttctatcatgacctgccctggaagcccgctgaa
ggacgcaacacccatgcttgcaaaaagtgtaagtgcaaccaccactccgacacgtgccac
tttgacatggcggtgttcatggcgtccggcaatgtgaccggaggtgtatgcaacgagtgc
cagcacaacaccatggggaacaactgtgagcagtgcaagcctttcttctaccagcaccac
gagcgagacatacgagaccccaacatctgcgagccttgtaactgtgacccagtgggatct
ctgaatggagggatctgcgatgctctaacggaagtctcgactggcttgatcgctggccag
tgtcgctgtaagcccaatgtggagggagagcgctgtgaccagtgcaaacaagggcactac
ggcctcagcgatgaccctcagggatgcaagccttgtacctgcaatgctcttgggacggtt
cctggaggaagcccttgtgagaccgacaccggaagctgctactgcaagcgtctggtccgt
gggagaaactgtgaccagtgtatgccccaacactggggcctgagcaatgacatggatggc
tgtcgcccgtgtgactgtgacctcgggggagctctcaacaatgattgttctgcagagaca
ggccagtgtcagtgtcgggagcacatgtttggccggagctgtgaacaggtggagtcggga
ttctacttcatcggcctggaccattacacttacgaagcagaggatgccaagtttgggcct
ggcgtgacggtggtgcagaggccccaccctctagaccggaaccctacctggaccggcgtt
gggtttgtgaacgttcctgagggggcctacctggagttcaacatcgacaacctcccacac
tccatggagtatgacgtcctcatccgctatgaaccgcagttgccggagcagtgggaagag
gtgttgatgactgtcatcaggcccggcgtgatcacagcagacagcagatgtgcaaacaca
atgccagaggacgacaaccagcgatcgtctctccatcctgggtccaggtatgtggtgctt
cccaggccagtgtgcctagaagctgggctgaactacaccgtccgcctcagtctgcctctc
tactccgccctcagtgacatccagtccccctacaccctcatagattcaattgtgctgatg
cctcactgtaagaacctggacatgttctccggctcggagggaggggacctggtgaacaat
aacgcctgggacaccttccagcgctacaggtgtctggagaacagccagggtgtggtgaag
acccccatgactgatatctgcaaggactacatcttcagtgtgtctgcactcttacactca
ggagctaaagcctgtcagtgtgatcccatgggctcgctcagcaccgtgtgtgaccccaac
gggggacagtgtcagtgccgtcccaacgtgatggggaggaactgtgagaaatgtgcccca
gccaccttcctcttcggaccatctggctgcagagcgtgtgagtgtaaccctcaaggctca
ctccactccttctgccacgaggccattggtcagtgcgagtgcgtccccggagcttacggc
cgacagtgtgaccgctgcctgcctggtcactggggcttccccaattgtcggccctgcacg
tgtaacggccacgctgaccagtgcgacgcccacacgggagagtgcctgggctgccgggaa
caaaccacggggcacaactgcgagaggtgtctcactggttactatggtgatgccgttctt
ggatctggggaccactgccgcccatgcatgtgccccgatgggcctgggagtaatcgccag
tttgctggggggtgctacaagagccctgatgcctaccaggtgttctgcgtctgcagtcct
ggatataaaggtgccaggtgtgatgagtgtgcccctggttactatggcaatcctcacgag
gtgggtgggcagtgtctcccatgccagtgcaacggcaacatcgacatgatggaccccggc
tcctgcgacgccagctccggtgtctgtctcaaatgcctgcatcacacagagggccaagac
tgcagtcgctgtaagctgggttaccatggcaacgccctcacccagagctgtagaaaatgc
atctgcaaccaccaaggcactgcccagcagtcgtgcccctcgctgggagactgccactgt
gacctctcgagtgggcagtgccagtgtctacccaacgtggtggggcagcactgcgacctg
tgtgcgcccgacacctggaacatggccagcgggacaggctgtgaggactgtgcctgcagc
ccagagcactcgtacggcacctcctgtaatgagatcacaggccagtgttcctgcaaggct
ggctttggtggaagaacatgccacgagtgcagggagttattttggggaaatccggagatg
aagtgtcacgcttgtgactgcgaccgcaggggcattgcggagccccaatgcaacaaggcc
acgggtcactgtgtgtgtgtggagggtgtgtcaggccccaggtgtgatacctgcgctcgg
ggatactctggagagttccccaactgcgtgcgctgccaccagtgctttgctgagtgggat
gtgattgtcggggagctcaccaaccagacccaccggctggtgcagaaggtcaacaccatc
aaggccagcggcatcaccggcccgtaccagaagactatagacagcttccagaagagtgcc
agctccatccgaaacctcctggcgcagaacccggccacccagcccctgacggaaatccag
caccttatggagcaagccacggatctggtgagagacatgaccaaccggttgaacctgact
gaagaggctctgtccaggagttcccttgataacaatgtgacggacactaaactggaggca
ctcaaagaggacgcccacaaactggagctaactgccaaggagcttctggaacacgttgag
tttgtcaagaactctgatgtccgtggagccacagatagcatcaccaaatatttccagcaa
tctgtgtcggcggaggctcgggccaacgcctctagcagcgatccaaacagcaccgtggag
cagtcggccaccctgcgtcagacagtggagcagaggatgaacgagacgggagatgaattt
aaaaacaggcaagaggaacacgccaccaggctggatgatctggccgggcagctagagact
ctcagtctagcagagctgagcgaaaagacgtgcggtgtcccttccggctccgaggcctgt
gcagactcaccgtgcggaggtctcagctgcatggacgctgaggggaagaggaggtgtggt
ggggagggctgcgacggcttggtgggactggcctccagtgccaggcagaaggccaaggac
tttgagaaagacatcgtcagtgcgatggaggaggtggaaaagctctcaaagctggtttcc
gaggcgaaggtcaaggcagacagagccaaagtgagcgctcagggcgtcctcctgaagacc
aacgagaccaagcagcgcgtggaccggagcaacgaggagctccgcaacctcatcaagcag
atccgcgacttccttactcaggacggagctgacctggagagcattgaggccgtggccaat
caggttctggagatgcagatgcccaccaccccggcccagctgcagaatctgactaatgag
atccgtgagcgtgtgggcagtctgtctgatgtggaggacatcctcaaccagagcgccgcc
gacatccagcgcgcagagggcctgctggaacaggcccgcaaggccagcaaagaagccacg
gatgtccgggacacagcagtgatcgtgaaagaggcgctggagcaggctgagaaggcccag
aacgcagcgactgaggccatcaagcaggccaccagtgacatcgaaggcacccaggatctc
atcgtctctgtggaatctgaaacagctgattctgagttcaggctgaataacgccacgcag
agactgcaccacctggagaaaggtgtggccctgctgaaggagaaggcccacaacaccacc
agcactgctgagaagacggaccaggatatgaagcacgtcaaccaagtggccgaccaggtc
aaaaaggacctggactctgacgttaaggacaagtacagcacagtggagggactgataacg
cagaaagcaagtgggatctctgatgccaagaggagggcccagatgctgcagcaggaggcc
aaagacctgctcttacaagccagcgacaagctgaagctcctcaaagacttggaaaagtct
tatgaggacaaccagaagacaatggaggacaaggccaatcagttggtggacttagagaag
gccgtgcgagaactgctccaggagatcagccataaagtcacagtttacagcacctgtctg
ttttaa
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