Clupea harengus (Atlantic herring): 105896100
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Entry
105896100 CDS
T09045
Symbol
ppp2r2aa
Name
(RefSeq) LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform
KO
K04354
serine/threonine-protein phosphatase 2A regulatory subunit B
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03015
mRNA surveillance pathway
char04261
Adrenergic signaling in cardiomyocytes
char04382
Cornified envelope formation
char04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105896100 (ppp2r2aa)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
105896100 (ppp2r2aa)
09150 Organismal Systems
09153 Circulatory system
04261 Adrenergic signaling in cardiomyocytes
105896100 (ppp2r2aa)
09158 Development and regeneration
04382 Cornified envelope formation
105896100 (ppp2r2aa)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
char01009
]
105896100 (ppp2r2aa)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105896100 (ppp2r2aa)
03036 Chromosome and associated proteins [BR:
char03036
]
105896100 (ppp2r2aa)
Protein phosphatases and associated proteins [BR:
char01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
105896100 (ppp2r2aa)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
105896100 (ppp2r2aa)
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
105896100 (ppp2r2aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
TFIIIC_delta
Motif
Other DBs
NCBI-GeneID:
105896100
NCBI-ProteinID:
XP_042564252
Ensembl:
ENSCHAG00000018377
UniProt:
A0A8M1KK56
LinkDB
All DBs
Position
7:complement(25056096..25066124)
Genome browser
AA seq
450 aa
AA seq
DB search
MAGAGDGDNEVQWCFSQVKGAFDDDIAEADIISTVEFSHSGELLATGDKGGRVVIFQQDP
ESKSQPLCRGQYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNASQFLLSTNDKTI
KLWKISERDKRPEGYNLKEEDGRYRDPSTVTALRVPIFQPMDLMVEASPRRIFANAHTYH
INSISVNSDNETXPGLTDGPAPVNLLEPGDHRPPAFNIVDIKPANMEELTEVITAAEFHP
HACNTFVYSSSKGTIRLCDMRASALCDQHSKLFEEQEDPSRRSFFSEIISSISDVKFSHS
GRYMMTRDYLSVKIWDLNMESRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWSGDDSV
VMTGSYNNFFRMFERGGRQDVTLEASREVSQPLMALKPRRVCAGGKRRKDEVGVDSLDFS
RKILHTTWHPHDNIIAVATTNNLYIFQDKR
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggcaggtgctggtgacggggacaatgaggtccagtggtgcttctctcaggtcaagggg
gcgtttgatgatgacatcgctgaagctgacatcatctccacagtggagttcagccactca
ggggagctgctggccactggagacaaaggaggcagggtggtcatcttccagcaggaccca
gagagcaagagccagcctctgtgtcgagggcagtataacgtgtacagcaccttccagagc
cacgagcctgagtttgactacctgaagagtctggagatcgaggagaagatcaacaagatc
cgctggctaccccagaagaacgcgtcccagttcctgctgtccacaaacgataaaaccatt
aagctgtggaagatcagtgagagagataagagacctgaaggctacaacttgaaggaggaa
gatggacgttacagagatcccagcacagtcactgctctacgggtacccatattccaaccc
atggacctgatggtggaggccagtccacggcgaatctttgccaacgcacacacctaccac
atcaactccatctccgtcaacagcgacaacgagacctaacctggtctgaccgacggaccg
gcgccggtcaacctgctggaacctggagatcaccgaccgccagcattcaacattgtagac
ataaagccggccaacatggaggagctgacggaggtgatcactgcggccgagttccacccc
cacgcgtgcaacaccttcgtctacagcagcagcaagggcaccatccgcctgtgtgacatg
cgcgcgtcagcgctctgcgaccagcactccaaactgtttgaggagcaggaggaccccagc
cgccggtcgttcttctcggagatcatctcctccatctcagacgtcaagttcagccacagc
gggcgctacatgatgacccgagactacctgtccgtcaagatctgggacctcaacatggag
agccggccggtggagacctaccaggtgcatgagtacctgaggagtaagctgtgctcgctg
tatgagaacgactgcatcttcgacaagtttgagtgctgctggagtggagatgacagtgtg
gtgatgacgggctcctataataacttcttccggatgtttgagcggggcgggcgccaggac
gtgactctggaagcatcgcgggaggtcagccagccgctcatggccctgaagccacgccgc
gtgtgtgcaggcggaaaacgccggaaggacgaagtgggcgtcgacagtctggacttcagc
agaaagatcctgcacaccacctggcatccccatgacaacatcatcgccgtggctaccact
aacaacctgtatattttccaagacaagcgttaa
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