Clupea harengus (Atlantic herring): 105896172
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Entry
105896172 CDS
T09045
Symbol
thbs3a
Name
(RefSeq) thrombospondin-3a
KO
K04659
thrombospondin 2/3/4/5
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04145
Phagocytosis
char04510
Focal adhesion
char04512
ECM-receptor interaction
char04518
Integrin signaling
char04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105896172 (thbs3a)
04518 Integrin signaling
105896172 (thbs3a)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
105896172 (thbs3a)
09144 Cellular community - eukaryotes
04510 Focal adhesion
105896172 (thbs3a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
105896172 (thbs3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105896172 (thbs3a)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
char04147
]
105896172 (thbs3a)
00536 Glycosaminoglycan binding proteins [BR:
char00536
]
105896172 (thbs3a)
Membrane trafficking [BR:
char04131
]
Endocytosis
Phagocytosis
Opsonins
105896172 (thbs3a)
Exosome [BR:
char04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
105896172 (thbs3a)
Exosomal proteins of colorectal cancer cells
105896172 (thbs3a)
Exosomal proteins of bladder cancer cells
105896172 (thbs3a)
Glycosaminoglycan binding proteins [BR:
char00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105896172 (thbs3a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TSP_C
TSP_3
COMP
EGF_CA
EGF_3
EGF_MSP1_1
cEGF
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
105896172
NCBI-ProteinID:
XP_042565039
Ensembl:
ENSCHAG00000018445
UniProt:
A0A8M1KTT8
LinkDB
All DBs
Position
11:complement(17629228..17642839)
Genome browser
AA seq
960 aa
AA seq
DB search
MGAKQYFAFWILFSVWQMNCMCEPLDKQDMQVIDLLALQDLKQTVAAVEKVSGAMKTLSD
IYIASTLRLPPKLGGVLLGFYNKQDNKKFLEIAVMAKINKVLVRYVRPDGKHHTVNLQNA
NLADGRTHSIILRVGGLRREHLHLELYVDCRLVDSGQRLPQLVSLPSNPEAVDIRNGHKA
YARLQGAVESLKVALGGSVATAGALTACPFQGDSSSYNTVNGEMGSILGDHTKALIGQLI
IFNQILGELREDIREQVKEMSLIRNTILECQVCGFHEPRSRCSPNPCFKGVSCMETMDYP
GYRCGPCPDGMRGNGTYCQDIDECYLAQPCYSNGACVNTAKGFTCEPCPPGLWGPPVMGV
GVEFAKTQRQECVDIDECVEISNACTPNSICTNTFGSYMCGGCKVGYMGNQTAGCHPRKS
CASLSFNPCDTNAHCVIERNGVVSCACNVGWAGNGNTCGKDTDIDGYPDRALPCMDNDKH
CKQDNCVFTPNSGQEDADNDGIGDQCDEDADGDGIKNVEDNCRLVANKDQQNSDTDSFGD
ACDNCPNVPNSDQKDTDGNGEGDACDNDIDGDGIPNVLDNCPKVPNPMQTDRDRDGVGDA
CDSCPEVSNPMQTDIDNDLVGDVCDTNQDSDGDGHQDSRDNCPDIPNSSQLDSDNDGLGD
DCDDDDDNDGIPDESHYGGDNCRLIPNPNQKDSDGNGVGDVCENDFDNDSVLDLVDVCPE
SAEVTLTDFRAYQTVILDPEGDAQIDPNWVVLNQGMEIVQTMNSDPGLAVGYTAFNGVDF
EGTFHVNTVTDDDYAGFIFGYQDSSSFYVVMWKQTEQTYWQSVPFRAKAEPGLQLKAVKS
HTGPGEYLRNALWHAGDTEGEVKLLWQDPRNVGWSDKTSYRWHLSHRPQVGYIRVRLYEG
TEMVADSNVVVDTTMRGGRLGVFCFSQENIIWSNLRYRCNDTIPEDFNRHRESTMVHIHV
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atgggggctaaacagtactttgcattttggatcttattctctgtgtggcaaatgaattgt
atgtgtgagccactggacaaacaggacatgcaagtgatcgacctgctggcacttcaggat
ctcaagcagacagtggctgcggtggagaaggtgtctggagctatgaaaaccctcagtgac
atctacatcgcctccaccctccgcctgccacccaaattgggtggcgtgctgctgggcttc
tacaacaaacaggataacaagaagttcttggagattgccgtcatggccaagatcaacaaa
gtcctggtgcgctatgtaaggccggatggtaagcatcacactgtcaacctccagaatgct
aacctggcagatggaaggacacactccattatcttaagggttgggggccttcggcgagaa
cacctgcacttggaactctatgtggactgtcgattggttgactcaggccaacgtcttccc
cagctagtgtctctgccttctaatccagaagcagtggatattcgtaatggccacaaggcc
tatgcaagactacagggtgcagtggagtctctgaaagtggcactagggggcagtgtggca
acagcgggagctctcacagcctgccccttccaaggggattcctcatcctacaacacagta
aacggagagatgggctccatacttggggaccacacaaaagctctgattgggcagctgatc
atttttaatcagatcctgggagagctcagagaagacatcagggaacaggtgaaagaaatg
tctctgatcagaaacactattttggagtgccaagtatgtggcttccatgaaccccgctcg
cgatgctccccaaacccctgcttcaaaggggtgtcctgcatggagaccatggactaccca
gggtaccgctgcgggccctgcccggacggcatgagaggaaatggaacctactgccaagac
attgatgagtgttacctggctcagccctgttactctaatggtgcgtgtgtgaacacagca
aaaggcttcacttgtgaaccctgtcccccaggactgtgggggccaccagttatgggagtc
ggcgtggagtttgccaagactcaaagacaggaatgtgtggatattgatgagtgtgttgaa
atcagcaacgcctgcacccccaactctatttgcacaaatacctttggctcatacatgtgt
ggaggctgtaaagttggatacatgggtaaccagacagcaggctgccacccacggaagtcc
tgtgcctccctcagtttcaacccttgtgacaccaatgcccactgtgtcatcgagaggaat
ggagtggtgtcctgcgcgtgtaatgtgggctgggctggtaatggtaatacctgtggaaag
gacactgacattgatgggtaccctgaccgcgctctgccctgcatggacaatgacaagcac
tgtaagcaggacaactgtgtattcaccccgaactcaggccaggaggacgcagacaatgac
gggattggggatcaatgtgatgaggatgcggatggagacggaatcaagaatgtggaggat
aactgtcggctggtggccaacaaagaccaacaaaactcagacacagattctttcggtgat
gcttgtgacaactgtcccaacgtccccaacagtgatcagaaggacaccgatggcaatgga
gaaggggatgcatgtgacaatgacattgatggagatggcatccctaatgtactcgacaac
tgtccaaaagtgcccaatcccatgcagacagatcgagatagggatggtgttggagatgct
tgtgatagctgtcctgaagtcagtaatcccatgcagactgacattgacaatgacctggtg
ggagatgtatgtgacaccaatcaggacagcgatggagatggccaccaggactcccgggac
aactgcccagacatcccaaacagctctcagttagactctgacaatgacggtcttggagat
gactgtgatgatgatgacgataacgatggcattcctgatgagagtcattatggcggagat
aactgtcgtctgatacctaaccccaaccagaaagattctgatggaaatggtgttggtgat
gtatgtgaaaatgactttgacaatgactctgtgttggatctggtggacgtttgcccagaa
agtgctgaggtcaccctgacagacttcagagcttatcagacagtcattttagacccagag
ggtgatgctcaaattgaccccaactgggttgtgcttaaccagggtatggagattgtccag
acaatgaatagtgacccaggattggctgtggggtacacggctttcaacggggtggatttt
gaaggcacattccatgtcaacacagtgactgatgatgactacgcaggcttcatctttgga
tatcaggattcatctagcttctatgtggtgatgtggaaacagacggaacagacttactgg
cagtcagttccgttcagggccaaggcggagcctggactgcagctgaaagcggtgaagtct
cacaccggtcctggtgagtacctgagaaatgctttgtggcacgcaggtgacactgaaggg
gaagtgaagctgttgtggcaggacccacgcaacgtggggtggagtgacaagacctcctac
cgctggcacctcagtcacagaccccaggtgggctacatcagagtgagactctatgagggg
actgagatggtggccgattcaaatgtggtggttgatactactatgcggggtggtagactg
ggtgtcttctgcttctcccaagagaacataatttggtcgaacctacgttatcgctgtaat
gacactattccagaagacttcaaccgccaccgtgaaagcactatggtgcacatacatgtg
tga
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