Clupea harengus (Atlantic herring): 105896232
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Entry
105896232 CDS
T09045
Name
(RefSeq) transcription factor SOX-30
KO
K09271
transcription factor SOX15/30
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105896232
Transcription factors [BR:
char03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
105896232
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
Arabino_trans_N
Motif
Other DBs
NCBI-GeneID:
105896232
NCBI-ProteinID:
XP_042564328
Ensembl:
ENSCHAG00000014257
UniProt:
A0A8M1KPK8
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Position
8:complement(13188577..13194621)
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AA seq
624 aa
AA seq
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MDRHPKRRAQMSFRKNEQGKNEESEQKPSKRLCSEGVRRPGRPPKVSYVDKSEEKTFGEE
KQLPKNFSCNVKCSGDSKKRNVPVIFKAGSSKDSIVPVSASPQETEDLVNSTLPTESEAI
SQNTLFMTPVFTNASVQVQSVQVKEESIANANNDDLKVNVSPKMTEVFSVPTQFVGQDQL
QVSGDRSTQTLQSNDFQLQYTFEGAEPITLSRVPFPPFPMSLPNETSVKVDTSGVNLTQS
PSTADDPDIPMCKDRSGYIKRPMNAFMVWARIHRQALSKANPMANNADISVQLGFEWSRL
TEEQKMPYYEEAHKLKVKHRQEFPGWVYQPRPGKRKGCGAGDEAPSTSTQAPLTTTSPPP
IAHSSATYTMARQPSSRGRSSAGQYLYRNVGRPRLPPVHMIRGPVQMPGGQPLFLQQPPP
RPLVHLACGDVVHRPCFRKPSVQHEHSHPIEPLREVTPTNMMHFPKGFQLQTSNLGHHQV
YPPAPVQHPTNAIPTQRFPFPSPVYVPGTQFYPPCTYPNAHGAYTYPNFNPSVSDVRGFY
EDQCQKHEAMFASLSREFLLREAGEGGSQSHTQLPPISSLMMVSSPSMTVPTSEMVYSQP
AQEDPSRLQTVSEDGEEVRVMRIL
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggacagacatcctaaaagaagggcgcagatgtcattcaggaaaaacgaacagggaaaa
aatgaagaaagtgaacaaaaacctagcaagagactttgtagcgaaggtgtgaggagacca
ggtaggccaccgaaagtgtcttacgttgataagtcagaagaaaagaccttcggtgaagag
aaacagctaccgaaaaactttagctgtaacgttaaatgcagtggggactctaaaaaacgc
aatgttccagtgatttttaaagcaggttccagtaaggacagcattgttccagtatctgct
tcgcctcaagaaactgaagacttggtcaactcaactttaccaacggaaagtgaagctata
agccaaaacactctatttatgacccctgtttttacaaacgcatctgttcaagtgcagtct
gtccaggttaaagaggaaagcattgctaatgctaacaatgacgaccttaaggtaaatgtt
tcaccaaaaatgacagaggtgttctctgtcccaactcaatttgtggggcaggatcaacta
caagtgtcgggagatcggtcaacacaaacacttcaaagtaatgatttccagctacaatac
acttttgaaggggctgagccgatcaccctcagccgggttcctttccccccttttcctatg
agtttgccaaatgagacctccgtgaaagtcgataccagcggagtaaacctcacacaatct
ccatcaacagcagatgatccagatatacccatgtgtaaagaccgcagtggctacatcaag
agaccaatgaacgccttcatggtgtgggccagaatccaccgtcaagctctctccaaggct
aatcccatggccaacaatgcagacattagtgtacagctgggatttgagtggagcaggcta
actgaagaacagaaaatgccctattatgaggaggcacacaaacttaaagttaaacatcgt
caggagtttccaggttgggtctatcagccaagaccagggaaaagaaaaggttgtggcgct
ggggacgaggctccttcaacatcaacacaagcacccctgaccaccacctcaccacctcca
attgcccacagttctgcgacctacaccatggcaaggcaaccctcttcacgtggtagaagc
tcagctggacaatatttgtatagaaatgtaggcagacccagacttcctcctgtgcacatg
atcagaggtcctgtccagatgcctggtgggcaacctctattccttcagcaacctcctcct
cgacctttagtacatcttgcatgtggggatgtggtccacaggccctgcttcagaaaaccc
agtgtccagcatgagcatagccaccctattgagccactacgagaggtgactcccaccaat
atgatgcacttcccgaagggctttcaactgcaaacatcaaatcttggacaccatcaagtg
tacccaccagcacccgtgcagcaccctacaaacgccatccctactcaacgtttccctttt
ccctctcccgtttatgttccggggacccagttctatccaccttgcacataccctaatgcc
catggtgcctacacctatccaaacttcaacccctccgtgtcagatgtcagaggcttctac
gaggatcagtgccagaagcatgaggccatgtttgccagcctgtcccgcgagttcctgctt
cgtgaggcaggggagggagggagtcagagccatacccagctcccccccatcagctcactg
atgatggtctcgagtccgtccatgactgtgcccacgtcggagatggtctacagccagcct
gcccaagaggatccctctcgtctgcagacggtcagtgaggatggggaagaagtccgtgtc
atgaggatcctgtag
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