Clupea harengus (Atlantic herring): 105896391
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Entry
105896391 CDS
T09045
Symbol
dcaf13
Name
(RefSeq) DDB1- and CUL4-associated factor 13
KO
K11806
DDB1- and CUL4-associated factor 13
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
char03009
]
105896391 (dcaf13)
04121 Ubiquitin system [BR:
char04121
]
105896391 (dcaf13)
Ribosome biogenesis [BR:
char03009
]
Eukaryotic type
90S particles
Other 90S particles
105896391 (dcaf13)
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
105896391 (dcaf13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Sof1
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
eIF2A
KNTC1_N
NBCH_WD40
Beta-prop_DCAF12
Beta-prop_WDR19_1st
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
105896391
NCBI-ProteinID:
XP_031432474
Ensembl:
ENSCHAG00000014543
UniProt:
A0A6P8G043
LinkDB
All DBs
Position
11:complement(4226585..4237767)
Genome browser
AA seq
445 aa
AA seq
DB search
MKVKVLSRNPDDYVRETTRDIHRVPRNYDPTLHPFEVPREYTRALNATKLERVFAKPFVG
SLDGHRDGINCMAKHSKSLSILLSGACDGEVKLWNLSKRECVRTVQAHEGFVRGIATRFC
GTSFFTVGDDRTIKQWKMEPPGYGEQEEPLNTILGKAVFTGIDHHQQGETFATCGQTVDI
WDEQRTTPIRSFSWGVDSFSCVRYNPVETELLASCASDRSIVLYDMREATPLKKVIMKLR
SNTLCWNPMEAYYFTCSNEDYNLYTYDMRHLDTPVTVHMDHVSAVLDVDYSPTGTEFVSA
SFDKSIRIFPKDGGHSREVYHTKRMQHVICVRWSADNKYILSGSDEMNIRLWKADASEKL
GVLTGREKVTRDYNQKLRDKFQHHPHIRRIARHRHLPHDLYKQRREIKEMKDARRRKEVN
VRKHSKPGSVPVETEKEKHVVAVVE
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtaaaagtgctttcccgaaatccggacgattatgttcgtgaaacgacaagggac
atacatcgtgttcccaggaactacgacccaacccttcacccgtttgaggtgcccagagaa
tacactagggccctgaatgccaccaagctggagcgtgtgttcgccaaacccttcgtggga
tctttggacggacatagagatggcatcaactgcatggccaaacactccaagagcctgtct
attctactatcaggggcctgtgatggagaggtgaaactgtggaacctatcaaagcgtgag
tgcgtacgcactgtgcaagctcacgaaggcttcgtcagaggaatagcaacccgattctgt
ggcacgtccttcttcacggttggtgatgacaggacaatcaaacagtggaagatggaacct
cccggctatggagaacaggaggaacctcttaacacaatccttggcaaggctgtgttcact
ggcattgatcatcaccagcagggggagacgtttgccacctgcggccagacggtggacatc
tgggacgagcagaggaccacccctatccgcagcttctcctggggagtggacagctttagc
tgtgtgcgctacaacccagtagagactgagctgctggctagctgtgcctcagacagaagc
atagtgctgtatgacatgagggaggccactcctctcaagaaggtgatcatgaagctgagg
agcaacaccctgtgctggaaccccatggaggcctactacttcacctgctccaatgaagac
tacaacctgtacacctatgacatgaggcacttggacacccctgtgacggttcacatggac
cacgtctctgcggtgctggatgtggactactcccccacggggacggagttcgtgtccgcc
agctttgacaagagtatccgcatcttccccaaggatggcggccacagcagggaggtgtac
cacaccaagcgcatgcagcacgtcatctgcgtccgctggtcggccgacaacaagtacatc
ctgagcggctcggacgagatgaacatccgcctgtggaaggccgacgcctcggagaagctg
ggagtgctcacgggccgagagaaggtaactcgcgactacaaccagaagctgagggacaag
ttccagcaccacccgcacatccgccgcatcgcccgccaccgccacctgccccacgacctc
tacaagcagcggcgcgagatcaaggagatgaaggacgctcgtcgcaggaaggaagtgaac
gtgaggaagcacagcaagccgggttccgtccccgtggagaccgagaaggagaagcacgtg
gtggctgtggtggagtag
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