Clupea harengus (Atlantic herring): 105896615
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Entry
105896615 CDS
T09045
Symbol
pabpc4
Name
(RefSeq) polyadenylate-binding protein 4
KO
K13126
polyadenylate-binding protein
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03015
mRNA surveillance pathway
char03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105896615 (pabpc4)
09123 Folding, sorting and degradation
03018 RNA degradation
105896615 (pabpc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105896615 (pabpc4)
03041 Spliceosome [BR:
char03041
]
105896615 (pabpc4)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
105896615 (pabpc4)
mRNA cycle factors
Stress granule specific factors
105896615 (pabpc4)
Spliceosome [BR:
char03041
]
Complex C
Other components
Complex C specific factors
105896615 (pabpc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RRM_5
RRM_10
RRM_occluded
RBD_RDR6
RRM_3
DUF6262
POP1_C
Motif
Other DBs
NCBI-GeneID:
105896615
NCBI-ProteinID:
XP_012678846
Ensembl:
ENSCHAG00000021463
UniProt:
A0A6P3VQV8
LinkDB
All DBs
Position
14:22204258..22216999
Genome browser
AA seq
637 aa
AA seq
DB search
MNTATPGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNF
QSPPDAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTF
SAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKER
EAELGAKAKEFTNVYIKNFGEDMDDERLKELFDKYGPTLSVKVMTDSTGKSRGFGFVSYE
KHEDANKAVEEMNGTELNGKAVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIK
NLDDTIDDEKLRKEFTPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVG
SKPLYVALAQRKEERKAHLTNQYMQRIAGMRAMPANAIINQFQPASGYFMPAVPQAQNRT
TYYAPNQLAQMRPNPRWQQQGGRGQGSFQGMPNSLRQPGPRASLRHLAPNAGPQGPRGIP
AGGQRVGNPGQPMGPRPSMGMTAPRAMPPYKYATTVRNTQPQVVQPIALQQTQPAVHVQG
QEPLTASMLAAAPPQEQKQMLGERLFPLIQGMHPSLAGKITGMLLEIDNSELLHMLESHE
SLRSKVEEAVAVLQAHQAKKDITQKVGVNPTPAAASS
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgaacacagcgaccccagggagttatccgatggcttctctctatgtcggcgacctgcac
cctgatatcacggaggctatgctgtatgagaaattcagccctgccggaccagtcctgtca
attcgggtttgtcgtgacatgattacccggcgctcactgggctatgcctatgtgaacttc
cagtcaccgcctgacgctgagagagcattggacaccatgaactttgacgtggtcaaaggg
aagcccatcagaatcatgtggtcacagagagacccttcactcaggaaatctggagtcgga
aatgttttcatcaaaaacctggacaagtccattgacaacaaggccctgtatgacactttc
tctgcctttggaaacatcttgtcctgcaaggtggtgtgtgatgaaaatggatccaaagga
tacgcgtttgtgcactttgagacacaagatgccgccgatcgtgccatcgagaagatgaac
ggcatgcttctgaacgaccgcaaggtgtttgtgggacgcttcaagtctcggaaagagaga
gaagcagagctcggtgccaaagcgaaggaattcacaaatgtctacatcaagaactttgga
gaagatatggatgacgaaaggctgaaagaactttttgataaatatggtccgactctgagt
gtgaaggtcatgactgactcaacaggaaaatcaagaggttttgggtttgtcagctatgag
aaacatgaagacgctaataaggcagtggaggagatgaacgggacagaactgaatgggaag
gctgtatttgtgggacgggcccaaaagaaaatggagagacaggcggagctgaagaggaag
tttgagcaactgaagcaggagaggataagcagataccagggagtaaacctttacatcaag
aatttggatgacaccattgatgatgagaaattgcggaaagagttcacaccatttggttcc
atcaccagtgcgaaggtgatgctcgaggagggacgctccaagggcttcggcttcgtctgc
ttctcctccccagaggaggccaccaaggccgtgacggagatgaacggccgcatcgtgggc
tccaagcccctctacgtggctctggcccagcgcaaggaggagcgcaaggcccacctcacc
aatcagtacatgcagcgcatcgctggcatgagggccatgcctgccaatgccatcatcaac
cagttccagcctgccagtggctacttcatgccagccgtgccccaggctcagaacaggacc
acctactacgcacccaatcagcttgcccagatgcggccaaacccacgctggcaacagcaa
ggtggcagaggacaaggcagtttccagggtatgcccaactccctgcgccaacccggtcct
cgcgccagcctgagacacttagcgcccaatgccggtccccagggcccgcgcggcatccct
gctggaggccagagagtcgggaaccctgggcaaccaatgggtcctcgcccctccatgggc
atgaccgcccctcgtgccatgccaccatataaatatgccaccacagttcgcaacacacag
ccacaggtggtgcaacccattgccttacaacagactcagccagcagtccatgttcagggt
caggagcccctcaccgcctccatgcttgccgctgcgcctccccaggagcagaaacagatg
ctgggtgaacgcttgttcccactgatccaaggcatgcatcccagcctggcagggaagatt
actgggatgctgctggagatcgacaactctgagctactgcacatgttagagtcccacgag
tctctgcgcagcaaggtggaagaggctgttgctgtgctccaagcacaccaggctaaaaaa
gacatcactcagaaagttggagtcaatcctacaccagcagctgcctcctcatga
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