Clupea harengus (Atlantic herring): 105896643
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Entry
105896643 CDS
T09045
Symbol
dis3
Name
(RefSeq) exosome complex exonuclease RRP44
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105896643 (dis3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105896643 (dis3)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
105896643 (dis3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
Rrp44_S1
CSD2
DUF4611
Motif
Other DBs
NCBI-GeneID:
105896643
NCBI-ProteinID:
XP_012678882
Ensembl:
ENSCHAG00000004041
UniProt:
A0A6P3VS74
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All DBs
Position
21:7741018..7751544
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AA seq
949 aa
AA seq
DB search
MLKSKTFVKKTRSGGILKVVREHYLRDDIWCGSEVCVECKDESPVLEKDPCMESSMCTFP
HYLIPDTNVVLHQIDVLEDPLIRNVIILQTVLQEVRHRSAPAYKRIKDAIHNKEKHFYTF
TNEHHRETFIEREPGESANDRNDRAIRAAAHWYSKHIPDSAEIKVVMLTNDRLNKEKAEQ
TGLLVYRCDEYIKSLIANPELVDRLALTSDEKNEITSSKILFPEHLPLSQIQSGIKSGKY
IQGTFRANRDNFLEGTVFVHGEGDESTEILLQGLQKLNRAVHQDVVAVELLPQEDWVAPS
AVVLQDDGSKGEDEEEEEEEEEKKLQTKQVHRDSLKPTGRVVGIIKRNWRPYCGMLTLSH
IKESTRHLFTPADRRIPRIRIETRQAATLEGQRIMVAIDGWPKNSRYPRGHFMKNLGSAG
DKETETEVLLLEHDVPHLPFSQNVLSFLPSMPWAITEDDMNRREDLRHLCVCSVDPPGCT
DIDDALHCRELENGNLEVGVHIADVSHFIRPGNAMDQEAASRGTTVYLCGKRIDMVPELL
SSNLCSLRSNVERLAFSCIWEMNDNAEILNTRFTKSVINSKASLTYAEAQMKIDDRNMND
DITKNLRGLNKLAKILKAGRIEKGALTLSSPEVRFHIDSETHDPIDLQTKELQETNSMVE
EFMLLANISVAQKIYDEFSECALLRKHPSPPPSNYDILHKAIKTKNLVIHTDSAKELADS
LNQADIEGFPYFNTLLRILATRCMMQAVYFCSGLDSDFRHYGLATPIYTHFTSPIRRYSD
IIVHRLLAVAIGADSTYPALMDKHKQAALCNNLNYRHKMAQYAQRASVAFHTQLFFKSRG
ILNEEGFILFVRKNAIIVLIPKFGLEGTVFFENKDKPSPKMTFNEEVPTLTVEGHTFNLF
DRVRVTISLDASNIQHQKIRMSLLEPVIPGVSVPLPEAEPEAKKAKLDR
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagtccaaaacgttcgtgaagaagacccgctcgggcgggatattgaaggtagtt
cgtgagcattatctccgagatgacatttggtgcggaagtgaagtctgcgtggagtgcaaa
gatgaatctccggttctggaaaaggacccatgcatggagagcagcatgtgtacatttcct
cactatctcattcctgacacgaatgttgttctgcaccagatcgatgttttggaggacccg
ttgatcaggaacgtcatcatcttacagacggttcttcaagaggttcgacacaggagcgca
ccagcctacaagagaatcaaagacgcgatccacaacaaggagaaacatttctacacattc
acaaacgaacatcatcgggaaacgttcatcgagcgcgagccaggagagagtgcaaatgac
agaaatgaccgagccatccgcgcggctgcacattggtacagcaagcacataccagacagt
gcggagatcaaagttgtcatgctgacaaatgaccggttgaataaagagaaggcagaacag
actggcttgcttgtttatagatgtgatgagtacatcaagagtttaatcgccaatcctgag
cttgtggaccggcttgccttgacctcagatgagaagaatgaaattaccagctctaaaatc
ttgttcccagagcatcttccgctgtctcaaattcagtcaggtatcaagagtggcaaatac
attcagggaaccttccgggccaacagggataacttcctggaagggactgtctttgtgcat
ggggaaggagatgaaagcactgagattctgttacaaggtcttcagaagctgaatcgggct
gtgcaccaggacgtggtggcggtggagctgttgccgcaggaggactgggtcgcaccatcc
gctgtggtcctgcaagacgacgggtctaaaggcgaggatgaggaggaggaagaggaggaa
gaggagaaaaaactgcaaaccaaacaggtgcaccgtgactctctgaagcccacaggccga
gtggtgggcatcatcaagagaaactggaggccctactgtggaatgctgaccttgtcccac
atcaaagagtccacaaggcacttgttcacgccggcagaccgtcgcatccccaggatccgc
atcgagacccggcaggcagccaccctggaaggccaaaggattatggtggccattgacggc
tggcccaaaaactccagatatccaaggggccattttatgaagaacctgggcagtgccgga
gacaaggagaccgagacggaggtgctgttgctggaacacgatgtccctcatctgcccttc
tcccagaacgtgctcagcttcctacccagcatgccgtgggccatcactgaggacgacatg
aacaggagggaggaccttcgccatctgtgtgtgtgcagtgtggatccccccgggtgcaca
gatattgacgacgctctgcactgtcgagaacttgagaatggaaacctagaggttggtgtt
cacatagcagacgtcagccatttcattcgcccagggaatgctatggaccaagaggctgcc
agcagagggaccaccgtgtatctgtgtggaaagagaatcgacatggttccagagctgctg
agttccaacctgtgttcactgcgctccaatgttgaacgactggccttctcctgcatctgg
gagatgaatgacaatgcggaaatcctcaacacccgcttcaccaaaagcgtcatcaactca
aaggcttctctaacctatgctgaggctcagatgaaaattgatgataggaacatgaatgat
gacatcaccaagaacttacgaggtctgaacaagctagcgaagatcttgaaggcgggaaga
attgagaagggagcgctgacgctgtcctctcctgaagttcgcttccacattgacagtgag
acgcacgaccccatcgaccttcagaccaaggaactccaagagactaactctatggtggag
gagttcatgttgctggccaacatctccgtcgcccagaagatctacgacgagttctcggag
tgcgcactactcagaaaacatccgtctcctcctccctccaactatgacatcctccacaaa
gccatcaagacaaagaacctggtgatccacacagactccgccaaagagctggcggactct
ctgaaccaggcagacatcgagggcttcccttacttcaacactctgctgcgtatcctagca
acacgctgcatgatgcaggccgtctacttctgctcgggcctggactccgatttcagacat
tatggcctggccacgcccatctacacacacttcacctcgcccatcaggaggtactctgac
atcatcgtgcacagactgctggccgtggccatcggagcagatagcacctacccggccctg
atggacaagcacaagcaggccgccctctgcaacaacctcaactacagacacaagatggcg
caatacgcccagagagcttcagtcgccttccacactcagttgtttttcaaaagcagaggg
attctgaatgaagaaggcttcattctatttgtgaggaagaatgccatcattgtcctcatt
cccaagtttggtttggaaggaacggtgttctttgagaacaaagataagcccagtcctaag
atgactttcaacgaagaggttcccacactgactgtggaaggtcacacatttaacctgttt
gaccgtgtaagggtgaccatcagtctggatgcgtccaacattcagcaccagaagatcagg
atgtccctcctggagccagtgatccctggagtgagtgtacccctacccgaggcagagcca
gaggccaagaaagctaagctggatcgctga
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