Clupea harengus (Atlantic herring): 105896925
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Entry
105896925 CDS
T09045
Symbol
caprin2
Name
(RefSeq) caprin-2 isoform X1
KO
K18744
caprin-2
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105896925 (caprin2)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
105896925 (caprin2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C1q
Caprin-1_dimer
Caprin-1_C
Motif
Other DBs
NCBI-GeneID:
105896925
NCBI-ProteinID:
XP_012679194
UniProt:
A0A6P3VRJ4
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Position
16:complement(2856893..2865752)
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AA seq
992 aa
AA seq
DB search
MGVYKKVKESSNLASAKIQHHHYFEPGRVVEFGCWEFLLSHHNDHASNIESEREAQGCET
PSMVQLSASPDPDMSPSPSPCSGKIEDKHGSPLSPRTITSLQLALSTSTTAYPGYETYIE
DGLICLKHKMRNLEKKKLKLEDYMKRLKHGFKLNEDQLDAVKKYEEVVHNLAFAKELHKT
LGVLTQDLLKAQKKAVKREQMAKMESERKRLCTVLQMQYILQNLQHEHVRQDVLSSARRP
LLVSAKELEGLRDLGALLNRKRDGPKSLNDQMTRSAVVYWELLEGKEKPVVGSTYKHMRE
WLAKLMDCGYFDQVVLPKDKKEPESHVKPGGLAALMKFRTPDVPTRVFLNRHYAPDEGLS
KQNLDKNPPSHNWKEEFLALKEQEPPDSWDMELNEGPPSSKAGLPSKPSRAAAGFVLKDQ
KSIKKPNIEPKPKAQRKPKAGKEIKSASRTEARVEVFNSPSSLPKDPILRKQELDDLMVQ
ISGSFSFMQDSLLDGEASQTHVHPRICASPVPSTPPAQRESKDSPAEDSSKTMHSTPLPS
KLLAKEGNTSLTNGSQSLDNWDLDVTPVEVVQEKPQLPRREGFESPPLFRRKSSISPTLE
EKLPAETPVPQPERQSPSNVVTPPATDSAQAFSTPPNHRSHSMVPSAAYHPVFKVNVPTP
LCSGSYMKPDTTYSESTLVRYATASTQTPPELNPPEEEPLQPDDMAQSECVMVSGQMYTM
GRSGQPYHARGSFRGVGRAGRGLPHYIRSPGVHRGGFDGYRTSPRSAGSFVPPSHSASTP
IGARDTGYQSNYKHGGTGGQRSNTSGGWSDSSQVSSPDREGTYIVDLVDSGHGDSLSDMP
VTPQGAHTLMPVHVYPISQQIRVAFSAARTFNFAPGTLDQPIAFDLLHSNVGEMFDMPSG
RFTCPVPGTYVFIFHILKLAVNVPLYINLMRNDEVVVSGYANDGAPDHETASNHALLQLY
QGDQLWLRLHRGAIYGSSWKYSTFSGFLLYQD
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgtataaaaaggtgaaagagagctcgaatctggcctctgctaaaatccaacat
catcattactttgagccgggaagggttgttgagtttggatgttgggaatttttgctcagt
caccacaacgaccacgcttccaacatagagagcgaacgagaagcgcaaggttgtgagact
cccagcatggtacagttgagtgcctccccagacccggatatgtccccctctccatctcca
tgctcagggaagatcgaagacaagcatgggagcccattgtctccacgaaccatcacctcc
ctgcagcttgcactctcaacctccaccaccgcctatcctggctatgagacatacatagag
gatggccttatctgtctcaagcacaagatgcgcaaccttgagaaaaagaagctaaaactg
gaagactacatgaagcgcttaaaacatggtttcaaactcaatgaagaccaactggacgcg
gtgaagaagtatgaggaagttgtccataacctggcatttgcaaaagagctgcacaagaca
cttggtgtattgactcaggacttgttgaaggctcagaagaaggcagtgaagcgtgagcaa
atggctaagatggagtctgagcgcaagcgtctgtgcacagtgctccagatgcagtacatc
ctgcagaacctccagcatgagcacgtcagacaggacgtcctgagcagcgccaggcgcccg
ctcctcgtctcggctaaagagctggagggcctgagggacctaggtgccctgctcaaccgg
aagagggatggtcccaagagtttgaacgatcaaatgacgcggtcagctgttgtctactgg
gagctgttggaggggaaggagaaaccagtcgtcggctccacatataagcacatgagagaa
tggctggccaagctgatggattgtgggtactttgaccaagttgtgcttcctaaagacaag
aaggaacctgagagccatgtgaagcctggaggacttgcagcccttatgaagttcagaaca
cctgacgtgcctaccagagtgtttcttaacagacactatgcacctgatgaaggcctcagt
aagcagaatctggacaaaaacccaccttcacacaactggaaggaggagttcttggcccta
aaagagcaggagcctccagactcatgggatatggagttaaatgaggggccaccctcctcc
aaggcaggactaccaagcaaaccaagcagagcagcagctggtttcgtccttaaagatcag
aagtcgatcaagaaacccaatatagagcctaaaccgaaagctcagagaaaacctaaagct
ggaaaggagatcaaatcagcatctcgaactgaggcccgtgtggaggtgttcaactctcca
tcctctctgcccaaagatcccatcttgcgaaaacaggagctggatgacttgatggttcag
atttcaggatccttcagctttatgcaggattcattgttggatggtgaagcatctcaaaca
catgtgcatcccaggatttgtgcatctcctgtgccctccactccccctgcccagagggaa
tccaaggatagtccagctgaggactcctccaaaactatgcattctaccccactgccttct
aaacttcttgccaaagagggtaacaccagtctgaccaatgggagtcagagtctggacaac
tgggacctggatgtcactccagtggaagtagtgcaggagaaaccgcagttgcccagacga
gagggttttgagtcgcctcctctttttcgccgcaagtccagtatctcaccgaccctggag
gagaagttgcctgccgagactcccgtgccacagccagagaggcagtctcccagtaacgtg
gtgactcctccagccactgactcagctcaagccttctccaccccaccaaaccaccgatct
cacagcatggtcccatctgctgcctaccatcccgtgttcaaagtcaatgtgcctacgcca
ctatgtagtgggtcttacatgaagccagatacgacttactctgaatccactcttgtgaga
tatgccactgccagcacccagaccccacctgagctcaacccaccggaggaagaaccactg
cagccagatgacatggctcagtcagagtgtgtgatggttagtggacagatgtacacaatg
ggacgctcagggcagccttaccatgcgcggggctctttcagaggtgtgggacgcgcaggc
aggggactgccacactacatccgctcgcctggtgtccacagaggagggtttgatgggtac
agaaccagccccagatctgctggaagttttgttcctccgtctcactccgcatctactccc
attggtgcacgggacaccgggtaccagtccaactacaagcatggcggcacaggggggcag
aggagcaacactagtggtggatggagtgactcgtcccaggtgagcagccctgaccgggag
gggacgtacatagttgacctcgttgactccggtcatggcgactcgctctctgacatgccg
gtcacacctcagggtgcacacaccctcatgcccgtgcacgtgtaccccatctcccagcaa
atccgggtggccttctcggccgctcgcaccttcaacttcgccccgggcacactcgaccag
cctatcgcatttgacctgctgcacagcaatgttggagagatgttcgacatgccgtcgggt
cgcttcacttgcccggtgcctggtacctacgtctttatcttccacatcctcaagctggct
gtcaacgtgccactttacatcaacctgatgcgcaacgacgaggtggtggtgtctggctac
gccaacgacggagcgcccgaccatgagaccgctagcaatcatgccctgctgcagctgtac
cagggtgaccagctgtggctgcgactgcaccgcggcgccatctatggcagcagctggaag
tacagcaccttctcaggctttctgctgtatcaggactga
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