Clupea harengus (Atlantic herring): 105897029
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Entry
105897029 CDS
T09045
Symbol
taf1b
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit B
KO
K15213
TATA box-binding protein-associated factor RNA polymerase I subunit B
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
char03021
]
105897029 (taf1b)
Transcription machinery [BR:
char03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
105897029 (taf1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rrn7_cyclin_C
Rrn7_cyclin_N
Zn_ribbon_RRN7
DUF5816
Motif
Other DBs
NCBI-GeneID:
105897029
NCBI-ProteinID:
XP_012679326
Ensembl:
ENSCHAG00000010599
UniProt:
A0A6P3VRG9
LinkDB
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Position
15:805457..814243
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AA seq
574 aa
AA seq
DB search
MDAELTRGYSVPCERCSAVDWGVSDSGQFYCRSCHNIIERVREFEETEVLSTSSRVTTLS
RSSLKKNEKVLGKEWMVIEGFQFILTHQADALLSLGVCSQFKDDVLWNFWRRYLQKTQQA
FTQNPINLGRVSADVDSDSALESVALTDVSMQSGPSPGPESELDLGASAGHSSDGGASSV
WSGSMDTSGYLNPRFKRRHHLMTMPKTLALCYLALLWVREGITLADLLRFVFERHIPYLH
IHDVFPEEITLFGRDAHIFRVESIPSYRRVQEEAMKLARVMELPTFPPISEECLLHPALL
SLRYLTEANLPDELHHWVCKVMAQSGLAEESVLTFDHASKAQRNSPIGYDLQACALIIVS
MKLLFRLNDHEEWIFSEQAEDHNFADMESPGLFSLTWWYEAMLRALDKAKKREEQHTASQ
IWKSSKALVFRKKDRTVSLKRRRVVEHLQNTFRKLSGPSPDPPRSKPSSFIFRWGEGEDS
DGPSFHQTKLDHVMKTKCDAHVTANEKYWHPVLRQCSKRVCKDHYAEVEATLPRMYVWLL
GLFSFLLRVKPSAMHEEVLKVERRFVKCWRRNRQ
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgaattaacacgtggctacagcgtgccttgtgaacggtgctccgcggtggac
tggggtgtgtccgattctgggcagttctactgcaggtcttgccacaatataattgagaga
gtgagagaatttgaggagactgaggtgttgtccactagcagtcgcgtgactaccctctcg
cgaagttctttaaaaaagaatgaaaaagtgcttgggaaagaatggatggtcattgagggc
tttcagttcatcctcacacaccaagctgatgctttgctgtctttaggagtctgttcacag
tttaaggatgatgttttgtggaatttttggcggaggtacctccagaaaacccaacaagca
tttacacaaaacccaattaaccttgggagagtatctgcagacgtggactcggactctgct
ctggagtcagtggctctgactgatgtgtccatgcagagtgggcccagcccgggcccggag
agtgagctggaccttggagcgagcgctggccactctagtgacggcggggcctcgagcgtg
tggagtggttcaatggataccagtggctacctcaaccctcgcttcaagaggcgccaccac
ctgatgaccatgcccaagaccctcgccctgtgttacctggcactgctgtgggttcgagag
ggcattacactggccgatctgctgagatttgtatttgaaaggcatattccataccttcac
atccacgatgtgtttcctgaagagattacgctgtttggcagagatgctcacatcttcaga
gtggagtccatcccctcgtaccggcgagtgcaggaggaggcgatgaagctggccagagtg
atggagctccctaccttcccccccattagtgaggagtgcctgctgcacccggccctgctc
agcctgcgctatctcaccgaggccaacctccctgatgagctgcaccactgggtgtgtaag
gtgatggcgcaatcaggcctggctgaggagagtgtgttgacatttgaccatgctagcaag
gcccagaggaattcgccgatcggctacgacctgcaggcctgcgctctcatcattgtctcc
atgaagctgctcttcaggctcaacgatcacgaggaatggatattttctgaacaagccgaa
gaccataattttgctgacatggagagtccagggttgtttagcctgacgtggtggtacgag
gcaatgctgagggccctggacaaagctaagaagagagaagagcagcacacagcaagtcag
atttggaagtcttccaaagccttggttttccgcaagaaagacagaactgtgtctctgaag
agaagacgggtggtagaacatctgcagaacaccttccggaagctttcaggaccctcccca
gacccgccaaggtccaaaccctccagtttcatcttccgctggggggaaggggaggattca
gatggccccagcttccatcagaccaaactggaccatgtcatgaaaacaaaatgtgatgcc
catgtcactgccaatgagaaatactggcatccagttctgcggcagtgcagtaaaagggtt
tgcaaggaccactacgccgaggtggaggccaccctgcccaggatgtacgtgtggctgctg
ggcctcttctccttcctgctcagggtgaagccgtccgccatgcatgaggaggtgctcaag
gtggagcgcagatttgtaaagtgctggcggaggaatcgacagtag
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