Clupea harengus (Atlantic herring): 105897079
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Entry
105897079 CDS
T09045
Symbol
xrn2
Name
(RefSeq) 5'-3' exoribonuclease 2 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03008
Ribosome biogenesis in eukaryotes
char03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
105897079 (xrn2)
09123 Folding, sorting and degradation
03018 RNA degradation
105897079 (xrn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
char03021
]
105897079 (xrn2)
03019 Messenger RNA biogenesis [BR:
char03019
]
105897079 (xrn2)
03009 Ribosome biogenesis [BR:
char03009
]
105897079 (xrn2)
03016 Transfer RNA biogenesis [BR:
char03016
]
105897079 (xrn2)
Transcription machinery [BR:
char03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105897079 (xrn2)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
105897079 (xrn2)
Ribosome biogenesis [BR:
char03009
]
Eukaryotic type
Pre-60S particles
RNases
105897079 (xrn2)
Transfer RNA biogenesis [BR:
char03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
105897079 (xrn2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
105897079
NCBI-ProteinID:
XP_012679392
Ensembl:
ENSCHAG00000012251
UniProt:
A0A6P3VSR8
LinkDB
All DBs
Position
15:complement(1225168..1256987)
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AA seq
984 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIVVHCLEEKSKECNGVRIPVDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVSIFEYIDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGMELVEEKQRVREEVIGRGGYLPPEGIKERFDSNCITPGTEFMDNLAKCLRYYVAD
RLSNDPGWQNITVFLSDASVPGEGEHKIMDFIRRQRAQPHHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNQPRPCALCGQVGHEIKDCEGLPREKKGEHDEFAGSLPGSEQD
FIFIRLAVLREYLERELTMASLPFPFEFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVGIYKDVVHKTGGWVTDSGFVNLERVELIMQAVGVAEDNIFKKRKNDDDGFKRRMKE
KKKRMKLEKQRQQEPSLLGQYAPQALGGRDRPGAVHNPRHTAYDMRMQSMNQHNSDAAQS
LKAMMKNGNKAGGSDGVDGRGVKRKAEDSDEEPEPEDNVRLWEDGWKQRYYKTKFDVDVS
DEDFRKKVVKCYVEGLCWVLAYYYQGCASWKWYFPFHYAPFASDFKDVKELCSGFDKDTK
PFKPLEQLMSVFPAASGNFLPETWRALMSDPESSIIDFYPDDFAIDLNGKKYAWQGVALL
PFVDERRLRAALAEVYPNLSPEENKRNSLGSDIMFVAKSHPVCDFIHELYRAESHEGTQI
PAELCHGIQGTLNLDEEPILPDKPVESPVPCLRDLAQNSAIGIKFLDPQFEVDFVFKAVL
LPGAKLAVKVLKPGDWERSSNGPWRPQLGFNHNRQQVHLDQSAFRSLGHHVNRNQGGGQY
SQGPPSGGHHRSGQYSSAPPPSSYNQGNFRGHHRDQRQAFQPQHSRQQAFTQPPPSSNPP
LFPRPPYAGGQGWDRAMQSQGQAFQHNMQRGQGGQHGGRGGYQQHDNRRDDRRDEHGQQQ
QPQQGYNTGRNYALPPPARKYTWS
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggcattttttcgttggttgagtcggaaatatccttcgatagtagtgcat
tgccttgaggagaagtccaaggaatgcaatggagttcgtatacccgttgacaccagcaaa
cccaatcctaatgaagtggagtttgacaacttgtacctggacatgaatggaattatccac
ccgtgcacacatcctgaggacaagccagcacccaaaaatgaagatgaaatgatggtgtcc
atttttgaatacatcgatcgactcttcaacatcgtgagacctcgaagagtcctgtacatg
gctatagacggagtggcccctcgtgccaaaatgaatcagcaacggtcgaggagattccgg
gcctctaaagaagggatggaactggtggaggagaaacagagagtgcgggaagaggtcatc
gggagaggagggtaccttcccccagaggggatcaaggagaggtttgacagcaactgcatc
actccaggaacagagttcatggacaacctggccaaatgcctccgatattacgtagccgac
agactgagcaatgatccaggatggcaaaacattacagttttcttgtcggacgccagcgtc
cctggcgagggtgaacataaaattatggatttcatcagaagacaaagagctcagccacat
cacgacccaaacacgcaccactgtctctgcggtgctgacgctgacctgatcatgttgggg
ctggcaacacacgagcccaacttcaccatcatccgtgaggagttcaagcccaaccagccc
agaccctgtgcactgtgcgggcaggtcggccatgagatcaaggactgtgagggactgccc
agagagaagaagggagagcacgatgaatttgcaggctctctaccaggttctgagcaggac
ttcatcttcattcgactggcagtcttgcgtgagtacttggagagggaactgaccatggct
agcctgccgttcccctttgagttcgagcggagtgtggacgactgggtcttcatgtgcttc
tttgttggaaacgatttcctgcctcatttgccgtccctagagatcagagaaggcgctatt
gatcgactggttggaatctataaagatgttgtacacaagacagggggttgggtcactgat
agtggatttgtcaacctggagcgcgttgagctcatcatgcaggctgtgggagtggctgaa
gacaacatcttcaagaagcgcaaaaatgatgatgatggattcaaaaggagaatgaaggag
aagaaaaagagaatgaagctggagaagcagcggcaacaggagcccagcttgcttgggcag
tacgcccctcaggctctgggtggcagggaccggccaggggccgtgcacaacccccgtcac
acggcctacgacatgaggatgcagtccatgaaccagcacaattcggatgctgcccagtcc
ttgaaagccatgatgaaaaatgggaacaaggcagggggcagtgatggagtggacggccgt
ggagttaagcggaaagctgaggacagcgatgaggagcctgaacctgaggacaatgtcagg
ttgtgggaggatggctggaaacaacgttactacaaaaccaaatttgacgtggacgtgtct
gacgaagacttccgcaagaaagttgtgaagtgctacgtggaaggcctgtgctgggtgctg
gcgtactactaccaggggtgcgcctcctggaagtggtacttcccgttccactacgctccc
tttgcatctgacttcaaagacgtcaaagaattgtgcagcggcttcgacaaggacaccaaa
ccgttcaagcctctggagcagctgatgagtgtgttccccgcagccagtggaaacttcctg
ccagaaacctggagggccttgatgtccgacccagaatcctccatcattgacttctaccca
gatgactttgctattgatctcaacggaaagaaatatgcttggcagggtgtggccctgctt
cccttcgtggatgagcgcaggctgcgggcggccctggcggaggtctaccccaacctctca
ccagaggagaataaaaggaacagcttgggaagtgacatcatgtttgttgcgaagtcccac
cccgtttgtgacttcatccatgaactgtaccgcgcagaatctcacgagggcactcagatc
cctgcggagttatgccatggaatccaaggaactttaaatcttgatgaagagcctattcta
ccagataaacctgtggagtctccagttccctgtctgagagacctggcacagaacagtgct
atcggaatcaaatttttggacccacagtttgaagtggactttgtgttcaaggcagtctta
ctccctggagccaaacttgccgttaaggtcctgaaacctggagactgggagaggtctagc
aatggaccatggagaccccagcttggtttcaaccacaatcgccagcaggtccacctggac
cagtctgcattcagatccttggggcaccatgtgaacaggaaccaaggaggcggccagtac
agtcaaggccctccctctggaggacaccacaggagtggtcaatacagcagtgccccgccc
ccaagcagttataaccagggcaacttccgcggccaccatagagatcaacggcaggccttc
cagcctcagcattccaggcaacaggcgttcacacagccccccccatcatccaacccaccg
ctcttcccaaggccgccatatgctggaggccaaggctgggaccgggcgatgcagtcgcag
ggccaagccttccagcacaacatgcagcgaggccaagggggccaacatggcggccgcggg
gggtaccaacaacatgacaaccgcagagacgaccggcgggacgagcacggacaacaacaa
cagccgcagcaggggtacaacaccggacggaactatgccctgccaccgcctgcaagaaaa
tatacctggagttga
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