Clupea harengus (Atlantic herring): 105897222
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Entry
105897222 CDS
T09045
Symbol
zeb1b
Name
(RefSeq) zinc finger E-box-binding homeobox 1b
KO
K09299
zinc finger homeobox protein 1
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105897222 (zeb1b)
Transcription factors [BR:
char03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain ZF
105897222 (zeb1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-Di19
zf-C2H2_jaz
Homeodomain
zf-C2H2_15
Zf-C2H2_ZNF451_C
zf-met
zf-C2H2_16
Zn_SUZ12
Motif
Other DBs
NCBI-GeneID:
105897222
NCBI-ProteinID:
XP_031439474
Ensembl:
ENSCHAG00000013673
UniProt:
A0A6P8GJW7
LinkDB
All DBs
Position
17:19253431..19305487
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AA seq
1185 aa
AA seq
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MADGPRCKRRKQANPRRTSVSNISAVVEGSSESDDEDKLHIAEEEGSLQDGDSVAHDDDP
NGTVDPEDRWDEVVKEECVSDGDDERSRDALVEEMLQSGDTTIIYPEAPEDEQRQGTPEN
NENGTPDAFSQLLTCPYCSRGYKRYASLKEHVKLRHEKNEDNYSCSLCSYTFSQRSQLEK
HMSAHKNGRDQRHVAQSGGNRKFKCTECGKAFKYKHHLKEHLRIHSGEKPYECSNCKKRF
SHSGSYSSHISSKKCIGLLSVNGRARPLAPPGPVSPSAPATPRAPPREKPNPAAKPQSKG
PLPITHIKAEPVESDLKPAVPTVPTAAVATTTAVNAPLQLLLPTVGLMSPVSISLAQLQS
LLKGDPAHGGNANGPLIQTISLPLLDQDGHAKILINYSLDPGHAAQTHAVQTQTQAQTQA
QTQAHAVLQLKKEPVAVATTTHNPAHTPLCKTERQAEDLTLKKRKKSLDEEEEGGTKETE
ASAEGEAVNGDEPAVGATPVAVATTPSEKSLQSVLKAYFALNAEPVTAEIARISTAVSLP
PSTVTRWFRKMQAKQSHTPTNTNTHTNPSGDASGASSDVDISPQPTPDPTPSCSRSPSPR
PADQSQPGSSPQSPGPLNLSADGPIPCRGGLVDGEGPLDLSLPKGAATAATPNQVSPVAM
QDEPLNLTCAKKDATPPTVANANSLVPTSANPISLVAHQLPTLVAISDHGGAKTILIPQL
AYTYAPPTSDMSPDEAAHTQVLHINGIKEEKLDAGVESVCVSEEQNDSDSGAPKRKMRRT
EGGQYACDLCDKIFQKSSSLLRHKYEHTGKRPHECGICSKAFKHKHHLIEHTRLHSGEKP
YQCDKCGKRFSHSGSYSQHMNHRYSYCRKDAPGGGRTADGSGGSTGSAPRSPAAEHRAPG
SSTGDASPPSPLHDSDERESEGDGEETGASGSVLDEDEIRVVRVGEEGEEYEEEEEEEEE
GEEGMEIGEQEGEREEEEEEVEEEGEEEEGEEEQRGEEEGDETQQEGEKEGEEMEKEKEG
EETEKEKEGEEMEKEGEETEKEKEGQEMEMEKGEETEREKEGEEMEKEGEEMEKEKEGEK
TEKEKEGEETEKDKKREEMKKEKEGENMEKEKEGEEKEKEKEGEETEKEGEETEKEGEEM
EKEKEGETDQAKGEEEMEEKSEGEEKEDVTTEGQQEGGKEETPGD
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atggcggatggccccaggtgtaagcgcagaaagcaggcgaatccgcggaggacaagcgtc
agtaacatcagcgctgtggtggagggcagttcagaatctgatgatgaggataagcttcac
attgccgaggaggaagggagcctccaggacggcgacagcgtcgcccacgacgacgacccc
aatgggaccgttgaccccgaagacaggtgggacgaagtggtgaaggaagagtgtgtgtcg
gatggtgatgatgagcgcagcagagatgctctggtggaggagatgcttcagtcaggtgac
acgaccatcatctaccccgaggctcccgaagacgagcagcgacagggaaccccagagaac
aatgagaatgggaccccagacgctttctctcagttgctgacctgcccgtactgttcccgc
ggttacaagcgctacgcctcgctgaaggagcacgtgaagctccgccacgagaagaacgaa
gacaactacagctgttccctgtgctcctacaccttcagccagagatcgcagctagagaaa
cacatgagcgcacacaagaacggccgagaccagcggcatgtggctcagtcagggggcaac
aggaagttcaagtgcactgaatgtggcaaagccttcaagtacaagcaccatctgaaggag
cacttgcgcatacatagtggagagaagccgtacgagtgctccaattgcaagaagcgcttc
tcccactccggctcctacagctctcacatcagcagcaagaaatgcatcggcctgctgtcc
gtcaacggtcgggcccgccctctggccccgccggggcccgtgtccccctctgcccccgcc
acgccccgcgccccccctcgtgagaaacctaacccggccgccaaaccccaatccaagggg
ccgctgcccatcacccacatcaaggcggagccggtggagagcgacctgaagcccgctgtg
ccaacggtgcccaccgccgccgttgccaccaccaccgccgtgaacgcccccctccagctg
ctactgcccaccgtgggcctgatgtcgcccgtcagcattagcctggcacagctgcagagc
ctgctcaagggcgatccggcgcacgggggcaatgccaacgggccgctcatacagaccata
agcttgcctctgttggatcaggacgggcacgctaagattctgatcaattatagtttggac
cccgggcacgcggcgcagacgcacgcagtgcagacgcagacgcaggcgcagacgcaggcg
cagacgcaggcacacgctgtgctgcagctcaagaaggagccagtcgccgtggcgacgacc
acgcacaaccccgcacacacgccgctgtgcaagacggagcggcaggcggaggatctgacg
ctgaagaagaggaagaagagcctggacgaggaggaagagggggggacaaaggaaacggag
gcttcggccgaaggagaggcggtcaacggcgacgagccggccgtgggcgcgaccccggtt
gccgtggcaacgaccccgagcgagaagagcctgcagtcggtgctgaaggcgtactttgcg
ctgaacgccgagccggtgacggcggagatcgcgcgcatctccaccgccgtcagcctgccc
ccgagcaccgtgacgcgctggttccgcaagatgcaggccaagcagtcgcacacacccacc
aacacaaacacacacacgaacccctcgggcgacgcttccggggcgagctctgatgtggac
atctcaccgcagcccacgcccgacccaacgccctcttgctcgcgttcgccgtcaccgcgg
ccagccgaccaatcgcagcccggctcctccccccaaagcccaggacctctcaacctgtca
gctgacggtcccatcccttgccgaggcggcctggtcgacggggaggggccccttgacctc
tcgctgcccaagggcgccgccacggcagcgacccctaaccaggtcagcccggtagccatg
caggacgagccattgaacctgacctgtgccaagaaagatgccacgcctcccaccgttgcc
aatgccaattcccttgtgcccacctctgccaatcccatcagcctagtggcccaccaactg
cccacactggttgccatttccgaccacggcggggctaagactatcctcattcctcagctg
gcatacacctatgcgccgcccactagtgacatgtcccccgacgaggctgctcacacacaa
gtgctgcacatcaacggcatcaaggaggagaagctggacgctggtgtggagagtgtgtgt
gtgtcggaggagcagaacgactcggactccggcgcgccgaagaggaagatgaggagaaca
gaggggggtcagtacgcctgtgacctgtgtgacaagatcttccagaagagtagctcctta
ctccgccacaaatatgagcacacaggcaagcggccccacgagtgtggcatctgcagcaag
gccttcaaacacaagcaccacctgatcgagcacacgcgcctgcactcgggagagaagccc
taccagtgcgacaagtgcggcaagcgcttctcccactcgggctcctactcccagcacatg
aaccaccgctactcctactgccgcaaggacgccccgggcgggggacgcacggccgacggc
agcggcggcagcaccggctcggccccgcgcagccccgccgccgagcaccgggccccgggc
agcagcaccggcgacgcctcgcccccttcccccctccacgactcggacgagagggagagc
gagggggacggggaggagacgggcgcgtccgggagcgtgctggacgaggacgagatccgc
gtggtgcgtgtcggggaggagggggaggagtacgaggaggaggaggaggaggaggaagag
ggggaggaggggatggagattggggaacaggagggagagagggaggaggaggaggaggag
gtggaagaggagggagaggaagaggagggagaggaggagcagaggggagaggaagaaggg
gatgagacacagcaggagggagagaaagaaggagaggagatggagaaagagaaagaaggc
gaggagacagagaaagagaaagaaggagaggagatggagaaagaaggagaggagacagag
aaagagaaagaaggacaggagatggagatggagaaaggagaggagacagagagagagaaa
gaaggagaggagatggagaaagaaggagaggagatggagaaagagaaagaaggagagaag
acagagaaagagaaagaaggagaggagacggagaaagataaaaaacgagaggagatgaag
aaagagaaagaaggagagaatatggagaaagagaaagaaggagaggagaaggagaaagag
aaagaaggagaggagacggagaaagaaggagaggagacagagaaagaaggagaggagatg
gagaaagagaaagaaggagaaacagaccaggcaaaaggagaggaggagatggaggaaaag
agtgaaggagaagaaaaggaggatgtcactacagagggtcagcaggagggaggaaaggag
gagacgccgggtgattaa
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