Clupea harengus (Atlantic herring): 105897453
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Entry
105897453 CDS
T09045
Name
(RefSeq) nuclear RNA export factor 1-like isoform X2
KO
K14284
nuclear RNA export factor
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03008
Ribosome biogenesis in eukaryotes
char03013
Nucleocytoplasmic transport
char03015
mRNA surveillance pathway
char05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105897453
03015 mRNA surveillance pathway
105897453
03008 Ribosome biogenesis in eukaryotes
105897453
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
105897453
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105897453
03009 Ribosome biogenesis [BR:
char03009
]
105897453
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
105897453
mRNA cycle factors
Stress granule specific factors
105897453
Ribosome biogenesis [BR:
char03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
105897453
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_8
UBA_8
LRR_4
LRR_9
Motif
Other DBs
NCBI-GeneID:
105897453
NCBI-ProteinID:
XP_012679838
Ensembl:
ENSCHAG00000010551
UniProt:
A0A6P3VS32
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Position
6:8064281..8080077
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AA seq
630 aa
AA seq
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MAAADDSRYYNEHDDRVGGPQFRNRKGRGPFRARMHSEHQGPRQRHRGGPGGFGPNPRTR
FEDDDGDVPMGDGVQDGSSQRRYNPYGRPGRRGDGRFDRDRKGSGGPGHRGGGASGGGGE
RGGGAAAGGKKGWFKIIIPYGKKYDKKWLLSALQNLCPVPFTPVKFSTEGHRAQFYIEDS
STANALQKISRKITDMEGYKVIVISNPCAPPLTDLKPEEMDSLKQCMSKRFDGSQQALDL
NSIRTDPDLVSQNTDIILNRKHCMHAVLKIIEENIPELVSLNLGSNKLYKLDDMAELASK
APNLKILNLSHNELRSERELDKVKGLKLVELWLDHNPLCDYFKDQPNYISAIRERFPRLL
KLDGHDLPPPIVFDVEAPTVIPPCKGSYFGSDDIKILILRFLQQYFSVYDSGDRQPLLDA
YHDGASFSLSMPFSAQNPARCSLGEYHKDSRNLKRLKDPTTRFRLLKHTRLNVVAFLNEL
PKTQHDTACFNVDVNTYTNTLLSFTVTGVFKEVDGKSRDSVRAFSRVFIAVPAGNTGLCI
VNDELFVRNATTEEIRRAFAAPAPTPSSSPVPTLTAPQQEMLNTFSLKSGMNLEWSQKCL
LDMEWDFDKAAHVFTQMKAQGKIPDVAFIK
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggccgacgactcccgctactacaacgagcatgatgaccgcgtcgggggccct
cagttccgtaaccgtaagggccgggggccgtttcgggcccgcatgcacagcgaacatcaa
gggccgaggcaacggcaccgaggtgggccagggggattcggacccaacccacgcacccgg
ttcgaggatgatgatggtgacgtccccatgggagatggggtgcaggacggttcgtcccag
cgcagatataacccctacggccggcctggtcgccgtggagacggacgtttcgaccgcgat
cgcaaaggaagtggaggacctgggcacagagggggaggagcttcaggaggtggaggagaa
agaggaggaggagcagctgctggagggaagaagggctggttcaaaatcataatcccctat
gggaagaagtatgataagaaatggctgctgagcgcactccaaaatctctgtcctgtcccc
ttcaccccagtcaaattcagcacagaaggccacagagcccagttctacattgaggattca
agcactgccaacgccctgcagaaaatctcccgcaagatcacagacatggaaggatacaag
gtcattgtgatctcaaatccatgtgctcctccactcactgatctgaaaccagaggagatg
gatagcctaaagcaatgtatgtccaagcgctttgatggttcccagcaggctctggatctc
aatagcatacgcacagacccagatttagtatcccagaacacagacataattctgaacaga
aaacactgcatgcacgctgtgctgaagatcatagaagagaatattccggagttggtgagc
ctgaatcttggcagtaacaagctctataagttggatgatatggcggaacttgccagcaaa
gcccccaacctgaaaatcctcaacctgtcccacaacgagttgcggtcggagcgggagctc
gataaggtgaagggcctgaagctagtcgagctgtggctggaccacaaccccttgtgtgac
tacttcaaggaccagcccaattacatcagtgccatcagggagcgctttcctcgattgctg
aagctggatggtcatgatcttcctcctcctattgtttttgatgttgaggcccccaccgtc
atccccccctgcaagggtagttattttggttcagatgacatcaagattctcatcctccgg
ttcttacaacagtacttcagtgtgtatgactcaggagacaggcagcctctgctggatgcg
taccatgatggcgcctccttctccctcagcatgccattcagtgcacagaaccctgccagg
tgtagtttgggggagtaccacaaagacagcaggaacctcaaaaggctcaaagatcccact
actcgttttcgccttctgaagcacactcgtctgaatgtggtggcgtttctgaacgagctg
cccaaaactcagcatgacacggcatgcttcaacgtggacgtcaatacatacacaaacaca
ctactatccttcactgtaactggagtcttcaaagaagtggatggtaaatccagagattca
gtgcgggcgttctctagagtcttcatcgctgttcctgcagggaatactgggttgtgtata
gtgaatgatgaattgtttgtgcgcaacgccaccacggaggagattcggcgggcgtttgct
gccccggcccccaccccctccagcagtcctgtgcccaccctcactgccccccagcaggaa
atgctgaacaccttctccctcaagtccggcatgaatcttgaatggtcgcagaaatgtcta
ctggatatggagtgggactttgacaaagctgcccatgtctttacacagatgaaggctcaa
ggaaagatcccagatgtcgcttttataaagtga
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