Clupea harengus (Atlantic herring): 105897458 Help Entry 105897458         CDS       T09045                                  Symbol pcdh1b Name (RefSeq) protocadherin-1 isoform X1   KO K16498   protocadherin delta 1 Organism char  Clupea harengus (Atlantic herring) Pathway char03273   Virion - Lassa virus and SFTS virus Brite KEGG Orthology (KO) [BR:char00001]  09120 Genetic Information Processing   09125 Information processing in viruses    03273 Virion - Lassa virus and SFTS virus     105897458 (pcdh1b)  09180 Brite Hierarchies   09181 Protein families: metabolism    01009 Protein phosphatases and associated proteins [BR:char01009]     105897458 (pcdh1b)   09183 Protein families: signaling and cellular processes    04515 Cell adhesion molecules [BR:char04515]     105897458 (pcdh1b) Protein phosphatases and associated proteins [BR:char01009]  Protein serine/threonine phosphatases   Phosphoprotein phosphatases (PPPs)    Protein phosphatase-1     PP1-interacting proteins (PIPs)      105897458 (pcdh1b) Cell adhesion molecules [BR:char04515]  Cadherins   Protocadherins    105897458 (pcdh1b) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Cadherin Protocadherin Cadherin_CELSR2_9th Cadherin_2 Cadherin_4 PepSY Motif Other DBs NCBI-GeneID:  105897458 NCBI-ProteinID:  XP_012679843 Ensembl:  ENSCHAG00000008178 UniProt:  A0A6P8F890 LinkDB All DBs Position 6:complement(7168242..7367053) Genome browser AA seq 1220 aa AA seqDB search MMSQRRGATLAWLVLLLVSFGSSVGGIKYQLVEEKPPNMLIGSLAADQGLPDTGHLYKLE VGSPYLRVDGKTGDIYTTEVPIDRENLKECRYLFEGDPCYLEFEVSITDLIKGQSPRLIE GRIEIMDLNDNTPQFSSPILSLSIPENTHVGTLFPIPMATDKDSGTNGIADYSLTAPSDA DSLFSLQVAMDTEETLPQLIVIGNLDREARDSYDLSLKVVDGGTPPRYSSALLRVTVTDV NDNPPRFERSHYEAELLENSPTGHSVLQVKANDSDMGPNGEVTYSLHQASALVQRLLNID RNSGIIYVKGLVDREEVGVLKFYVLAKDNGPPVKSSKVQVTITVKDQNDNAPTITIRGIG LVTHDDGVANISEDTPVGTPVALVEVSDHDEGENAIVTCVVAGDVPFQLTRASDSANEKK RKYFLQTTTLLDYERIKEYRIEIVGVDSGNPALSSTNSLKVQVTDINDNAPIFSPSLYEV DFAEENQPGDRVLDVVATDADSGTNAELTYSIVMDQSIKGLFEINANTGEVRVLNQLDRE HQEQYQFHVAASDKGVPSQRGTATVVVRVLDRNDNDPKFMLSGYSFSVLENMPPLSPVGM VTVIDADKGENAQVSLSVEPDNGKFIIQNGTGTILSSISFDREKECTYTFRLKAVDGGDP PRSSYVGVTINVLDENDNAPYVTKPSNSSYKFLPPLTSPETHVERVEAEDIDTGPNAELQ YNIVGGNPHGLFRISPNDGEITLTKEFTRKHNGLHRLVVRVSDMGKPSRHTTALVHIFVN ETIGNVTLVESLVGHSLYTPLDTDIAGDPHEYLRIQQSNIVYGSLAGLAGVILVIVVVVV IRHRLQKEAKSGYQAGKKESKDLYAPKQGPKSGKSGKKGKKHKAPKPAKPIEEDEEASLQ KGMKFNLMNESVNESPKIHLQLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQAV QELPATNTFVGTGDNSSTGSDQYSDYRITANPPKYSNKQLPHRRVTFSTANQAQDLQDPS QHSYYDSGLEESETPSSKSSSGPRIGPLALPEDHYERTTPDGSIGEMEHPENDLRSLPDV AMTGNCTRECTEFGHSDACWMPGQPSPTHAMSTKGAPTLSTFVPYQERDGPMTNGSPKPV PEERVSGNGGGGSGGGGGGGGGGSTKVAGVRFKPPYTSAYTAGGEPGKDCSLEEIPLSQA ADYSSSTTPSSQGSKREIYL NT seq 3663 nt NT seq  +upstreamnt  +downstreamnt atgatgtctcagcgacggggcgccacgttggcatggctggtgctgctgctggtctcgttc ggctccagtgtgggaggcattaagtaccagttggtcgaggagaagccgcccaacatgctg atcggcagcttggcagcagaccaggggctgcccgatacgggtcacctctacaagctggag gtaggcagcccttacctgcgcgtggacggaaagaccggagacatctacaccaccgaggtc cccatcgacagggaaaacctgaaggagtgccgttatctgtttgagggtgatccctgttac ctggagttcgaggtgtccatcactgacctcatcaaaggccagtctccccgtctgatagag gggcgcatcgagatcatggacctgaatgacaacacgccgcagttttcctcacccatcctg tcgctgtccatcccagaaaatacgcacgtgggcacgctcttccccatccccatggcgacc gacaaggactcggggacaaatggcatcgccgactactcgctgaccgcgccatcggacgcc gacagcctcttcagcttgcaggtggcgatggacacagaggagacgctgccgcagctcatc gtgattggcaacctggatcgcgaggcgcgcgactcctacgacctcagcctcaaggtggtg gacggaggcacgccgccccgctatagcagtgccctgctgcgcgtcactgtcaccgacgtc aacgacaacccgcccaggtttgagaggtcccactacgaggcagagctgctggagaacagc cccacaggtcactccgtgttacaggtgaaggccaatgactctgacatgggtcccaatgga gaagtgacctacagcctgcaccaggcctcggctctcgtgcagaggcttctcaacatcgac aggaacagtggcatcatttacgtcaagggcctggtggacagagaggaggtgggtgtcctg aagttctacgtcttggcgaaggacaatggcccaccggtcaagagttccaaggtccaggtg accatcaccgtgaaggaccagaacgacaacgcacccaccatcaccatccgtggtattggc ctggtgacccacgacgacggcgtggccaacatttcggaggacacgcccgttggcaccccg gtggcgctggtggaggtgtcggaccacgacgagggggagaacgccatcgtgacctgcgtg gtggcgggggacgtgcctttccagttgacacgagccagcgattcggccaatgagaaaaag agaaagtacttccttcagacaacaacgctgctggactacgagcgcatcaaggaatacagg attgagattgtgggtgtcgactcaggcaatccagctctgtcaagcacaaactcactgaaa gtccaagtcacagacatcaacgacaatgctccgatcttctccccttccctgtatgaagtc gatttcgcagaggagaaccaacctggtgatagagttctggatgtagttgcaactgatgca gatagtggcaccaatgccgaactcacttacagcatagtcatggaccagtccatcaaaggg ctatttgagatcaatgccaacactggtgaagtccgcgttctgaaccaacttgaccgcgag caccaagaacagtaccagttccacgttgctgcatcggacaaaggtgtcccaagccaacgg ggtacagccactgttgtggtccgagtactggaccgcaatgacaacgaccccaaattcatg ctgagtggatacagcttctctgtcctcgaaaacatgcccccgctcagtcctgtcggcatg gtgacagtcatcgatgcagacaagggggaaaatgctcaagtgagtttgtcggtggagccg gacaatgggaagtttatcatccaaaatggaacgggcaccatcttgtccagcatctccttt gaccgggagaaggagtgcacctacacgttccggctgaaggcggtagatggtggcgacccg ccacgctcctcctacgtcggcgtcaccattaacgttctggacgagaacgacaacgcccct tacgtcaccaaaccctccaactcctcgtacaagttccttcctcctctcaccagccctgag actcatgtcgaaagggtcgaggccgaggacatcgacacagggcccaacgcagagctccag tacaacatcgtcggtggcaatcctcacggcctgttccgtatctcccccaacgacggcgag atcacgctgaccaaagagttcacacgcaaacacaacggccttcaccgtcttgtggtgcgc gtcagcgacatgggcaagccttcacgccacaccaccgccctcgttcacatctttgtgaac gagaccatcgggaacgtcaccttagtggagtccctcgtgggccacagcctgtacacccca ctggacacagacattgccggcgacccccacgagtatctgcgcattcagcaaagcaacatt gtgtacggcagcctggcaggcctggccggggtcatcctggtcatcgtggtggtggtggtc atcaggcatcggctccagaaggaggccaaaagtggctaccaagcggggaagaaggagagc aaagacctctacgcccccaaacagggcccaaagagcggtaagagcggcaaaaaggggaag aagcacaaggcccccaagcccgccaagcccatagaagaggacgaggaggccagccttcag aagggtatgaaattcaacctcatgaatgaaagtgtcaatgaaagccctaagatccacctg cagctcaactaccccccgggcagcccagacctgggcaggcactaccgctccaactccccc ctgccctccatccagcttcagccgcagtccccttcggcctccaagaagcaccaggccgtg caggaactcccggccaccaacacctttgtgggaacgggagacaacagctctacaggctcg gaccagtattcggattacaggattacggccaacccaccgaaatacagcaacaaacagctg ccgcaccgtcgagtgaccttctccacagccaatcaggcgcaggacctgcaggacccttct cagcacagctactatgacagcggtctggaggagtcagagacgcccagcagcaagagctcg tctgggccccgcatcgggcccctggccctgcccgaggaccactacgagcggaccaccccc gacggcagcatcggagagatggagcaccccgagaacgacctcaggtctctccccgacgtg gccatgactgggaactgcacgcgggagtgcacggagttcggccactcggacgcctgctgg atgccaggccagccctcgcccacccacgccatgagcaccaagggcgcgcccacgctctcc accttcgtgccttaccaggagcgagacggccccatgaccaacggcagccccaagcccgtg cccgaggagcgtgtcagcggcaacggtggtggtggcagcggaggaggaggaggaggagga ggaggaggaagcaccaaagtggctggcgtgcgcttcaagcctccgtacaccagtgcctac acggctggaggggagcctggcaaagactgctccctggaggagatccctctgagccaggcg gccgactactcttcctccacaaccccctccagccagggctccaagagggagatctacctg tga

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