Clupea harengus (Atlantic herring): 105897518
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Entry
105897518 CDS
T09045
Symbol
sox5
Name
(RefSeq) transcription factor SOX-5 isoform X5
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105897518 (sox5)
Transcription factors [BR:
char03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
105897518 (sox5)
BRITE hierarchy
SSDB
Ortholog
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GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
105897518
NCBI-ProteinID:
XP_012679902
Ensembl:
ENSCHAG00000024830
UniProt:
A0A6P3VS54
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Position
16:9771023..9898086
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AA seq
773 aa
AA seq
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MLTEPELPQEFNRMSSKRPASPYGGTDGEVAMATSRQRMDDGETDGHPVIHLPLNSYCSK
VSPRSPRAPDSPPTLHSSMEHESSKGLDLSPYPAHSSSSPGKPAQEEGGRLGSESGGGGG
GGSGSASVGTPERRKGSLADVVDSLKQRKMEELIKNEPDEAPSIERLLSKDWKDKLLAMG
SGNFGEIKGTPDSLAEKERQLMGMIHQLTSLREQLLAAHEEQKKLAASQIEKQRQQMELA
KQQQDQIARQQQQLLQQQHKINLLQQQIQQVQGQLPPLMIPVFPPDQRTLAAAAAQQGFL
LPPGFNYKPGCNDPYPMQLIPTTMAAAAAASPGLGALQLQQLYAAQLAAMQVSPGAKHSG
LSQANLGGTHSPTGGHDKSRSSTPPPKHKEEGAAQPLNLSAKPKTAESKSPTSPASPQVP
SLKMGSGLLKHSNAPSSAGGPTSRLSSIDLLSSISSGAYLNDHEAVTKAFQEARQMKEQL
KREQQVLDAKVAAVNSLGLNNGRADKEKAALESLSHQLKQTEESKFSHAMMDFGMSGDSD
GSPSVSDSRMFREARGRDRTEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGS
RWKSMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRNR
RQEMRQYFTVGQQAQLPLASAGVVYSGALSMAGLPSPQMPSEHSSMSSSPEPVAPPTSQA
SAYLSSPIIKGEEPRIKQELRLDDSNGDAYEDFEYDDDEGDYVSDSENHITAQ
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgctcacagaacctgagctgcctcaggagtttaacaggatgtcttccaagcgaccagcc
tctccatatgggggaacagatggagaggtagccatggcgaccagcagacagcgaatggat
gatggggagactgacgggcaccctgtcattcacttacccctcaactcctactgcagcaag
gtgtcccctcgctccccacgagcgcccgacagccccccgactctgcacagctccatggag
cacgaaagcagtaaggggctggacctgagcccgtacccagcccacagctcctcgtccccg
ggcaagccggcacaggaggagggcggtcggctgggcagtgagtcgggtggtggtggcggc
ggcggcagcggcagcgcgtccgtgggaacgccagagagacgcaaaggcagcctggccgac
gtggtggactcactgaagcagcgcaagatggaggagctgatcaagaacgagcccgacgag
gcccccagcatcgagaggctcttatccaaggactggaaggacaagctgctggccatgggc
tctggtaactttggagagatcaaaggaaccccagacagcctagcggagaaggagcgtcag
ctgatgggcatgatccaccagctgaccagcctgagggagcagctcctggcagcccacgag
gagcagaaaaagctggccgcctcgcagatcgagaagcagcgccagcagatggagctggcc
aagcagcagcaggaccagattgcccggcaacaacagcagcttctccagcagcagcacaaa
atcaacctcctgcagcaacagatccagcaggtccagggtcagctcccccccctcatgatt
cctgtgttcccgccggaccagaggaccctggcagcggcggccgcccagcagggattcttg
ctcccgcctggattcaactacaaacctggctgcaatgacccttacccgatgcagctgatc
cccaccaccatggcagcggctgccgcggcgtcgcccggccttggcgccctccagctgcag
cagctctatgcggcgcagttggcagccatgcaggtgtctccgggggccaagcacagcggc
ctctctcaagccaacctgggcggcacacactcccccaccggcggccatgacaagagccgc
agctccacaccaccgcccaagcacaaggaagagggcgctgctcagcccctgaacctgtcc
gccaagcctaagacagccgagagcaagtcacctacctcccccgcttccccacaggtcccc
tcgctgaagatgggctccgggctcctcaagcacagcaacgccccctccagcgccggaggc
cccaccagccgactcagctccatagacttgctgtcctccatcagttcgggggcctacctg
aatgaccatgaggccgtgaccaaggccttccaggaggctcggcagatgaaggagcagctc
aagagggagcagcaggtgctggacgccaaggtggccgccgtcaacagcctgggcctcaac
aacggccgcgcagacaaggagaaagccgctctggagagtctgagccatcagctaaaacag
acagaggagagcaagttcagtcatgccatgatggacttcggcatgagcggagactctgat
ggcagccctagtgtatcagactcgcggatgttccgtgaggcccgcggtcgggaccggaca
gagcctcacatcaagcggcccatgaacgcctttatggtgtgggccaaggacgagcgcagg
aagatcctgcaggccttccccgacatgcacaactccaacatcagcaagatcctgggctcc
cgctggaagtccatgaccaacctggagaagcagccgtactacgaggagcaggcgcgcctg
agcaagcagcacctggagaagtaccccgactacaagtacaagccgcggcccaagcgcacc
tgcctggtggacggcaagaagctgcgcatcggcgagtacaaggccattatgaggaaccgg
cgtcaggagatgcgccagtacttcaccgtggggcaacaagcccagcttccgttggcctca
gcaggcgtggtgtactcaggcgccctctccatggctggcctgccttccccccagatgccc
tccgaacattccagcatgtccagcagccccgagcccgtggcccctcccaccagtcaggcc
tccgcctacctcagcagccccatcatcaagggggaggagccccgtatcaagcaggagctg
cgtctggatgacagcaacggcgacgcctacgaggactttgaatacgacgacgacgaagga
gactacgtcagcgacagtgagaaccacatcaccgcccagtga
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