Clupea harengus (Atlantic herring): 105897766
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Entry
105897766 CDS
T09045
Symbol
hif1ab
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha b isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04137
Mitophagy - animal
char04140
Autophagy - animal
char04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
105897766 (hif1ab)
04137 Mitophagy - animal
105897766 (hif1ab)
04148 Efferocytosis
105897766 (hif1ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105897766 (hif1ab)
Transcription factors [BR:
char03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
105897766 (hif1ab)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
PAS
HIF-1
PAS_9
PAS_4
HLH
DUF5986
Motif
Other DBs
NCBI-GeneID:
105897766
NCBI-ProteinID:
XP_012680178
Ensembl:
ENSCHAG00000003747
UniProt:
A0A6P3VSF2
LinkDB
All DBs
Position
15:11504963..11521532
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AA seq
798 aa
AA seq
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MDAGVTTEKKRVSSERRKEKSRDAARSRRGKESEVFYELANQLPLPHNVTSHLDKASIMR
LAISYLRMRKLLNTDVEEEEESELDSQLNGFYLKALEGFLMVLSEDGDMVYLSENVSKCM
GLSQFDLTGSSIFDFAHPCDHEEMREMLVHRTSTKKGKEQNTDRSFFLRMKCTLTSRGRT
VNIKSSTWKVLHCMGHVRVQEGDEAPVDGGFKEPPLSYLVVICEPIPHPSNIEVPLDSKT
FLSRHTLDMKFSYCDERITELMGYDPDDLLNKSVYEYYHALDSDHLTKTHHNLFAKGQVT
TGQYRMLAKKGGFVWVETQATVIYNPKNSQPQCIVCVNYVLSGIVEGDLLLSLRQTVTDP
KIEVVEEEDRAEEVVLEEEEVVEEEEEEEEKKKSPELNITKLFISHSEEVSSDSLYEKLK
ASGSDLSLLAPAAGDTIISLDFTGPDSDQVLKEVHLYNDVMLPSTSKKLPLPLSPMESSP
SLASSLTPDPATTTSSSSPETSSTEPSSPMDYCFQVDSDIGAEFGIDMVEKLFAIGTEAK
NPFSTQELCDLDLEMRAPYIPMDDDFQLRIPSPLEPLPSGHLPMTAMSSIFQPLPTDSSS
SSSPSSSSASSPSGSVGQQEALSRGPSPLHMLMESGSSPNSPLHTPHLRDSSDIPRSLSD
LLDVSRRASRRSALDQSFSPKMLALQNSQRKRKLEETTTLSQAVGLGALLQSMDSTLEPG
KRAKVLEVKGSSMLGGNKTILILPSDMASRLLCSSLETSVASGLPQLTRDDCEVNAPIQE
RHHLLQGEELLRALDQVI
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atggatgctggtgttaccactgaaaagaaaagggtgagctccgagcgcaggaaggagaag
tcccgcgatgccgctcgcagccgccgaggcaaggagtcggaggtgttctacgagctggcc
aaccagctgcccctgccccacaatgtgacctcccacctggacaaggcctccatcatgagg
ctcgccatcagctacctgcgcatgaggaagctgctcaacacggatgtggaggaggaggag
gagtcggagttggacagccagctcaatggtttctacctgaaggcgctagagggctttctg
atggtcctctctgaggatggagacatggtctacctctcggagaacgtcagcaagtgcatg
ggactctctcagtttgatctgactggaagcagcatctttgacttcgcacacccctgtgac
catgaggagatgagggagatgttggtccacagaacaagcaccaagaagggcaaggagcag
aacacggatcgcagcttctttctgcgcatgaagtgcacgctcaccagcagaggccgcacc
gtcaacatcaagtcctccacatggaaggtgctccactgtatgggtcacgtgcgtgtccag
gagggcgatgaggcgcctgtcgacggcggcttcaaggagccccccctctcctacctggtg
gtgatctgcgagccaataccccacccgtctaacatcgaagtgccgctggacagcaagacc
ttcctcagccgacacaccctcgatatgaagttctcctactgtgatgagaggatcacagag
ctcatgggctacgatccagatgacctgctgaacaagtcagtgtacgagtactaccacgcc
ctggactccgaccacctcaccaagacacaccacaacctgtttgctaagggccaggtcacc
actggccagtaccgcatgctggccaagaagggcggctttgtgtgggtggagacccaggcc
acagtcatctacaaccccaaaaactcccagccccagtgcattgtctgcgtcaactatgtg
ctgagtggcatcgtggagggcgacctgctcctctccctgcggcagacagtcaccgacccc
aagatagaggtggtggaggaagaggatcgggctgaggaggtggtgctggaggaggaagag
gtggtggaggaggaagaggaggaggaggagaagaaaaagagcccagagctgaacatcacc
aagctcttcatcagccacagcgaggaggtcagctcggacagcctgtacgagaagctgaag
gcgtcgggctcggacctcagcctcctggcccctgctgccggagacaccatcatctcgctt
gacttcaccggacccgactctgaccaggttctgaaggaggtgcacttgtacaatgacgtg
atgcttccctccaccagtaagaagctgcccttgcccctctcccccatggagtcctctcca
tccctggccagctcgctgacccctgaccccgccactaccacgtccagctccagcccagag
accagctccacggagcccagtagccccatggattactgtttccaagtggactcggacatt
ggggccgaattcggtatagatatggtggagaagctctttgctattggcactgaagcaaaa
aacccattcagcacccaggaattgtgtgacctggacctggagatgcgggctccctacatc
cccatggacgatgacttccagcttcgcatcccgtcccccctggagccacttccgtccggc
catctccccatgactgccatgagctccattttccagcccctgcccactgactcctcctct
tcatcctctccgtcctcctcctccgcctcttcacccagtggcagtgtggggcagcaggaa
gccctctctcgcggcccctcgcccctgcacatgcttatggagagcggaagctctcccaac
tccccgttacacacgccgcacctccgggactcctcagacataccgcgcagcctctcggac
ctgctcgacgtcagccgtcgcgcctccaggaggtcagctttggaccagtcgttttctccc
aagatgctggccctgcagaacagccagcgcaagaggaagctggaggagaccaccacactg
tcccaggcagtcggactgggtgctttgctgcagagtatggacagcaccttagagcctggc
aagagggccaaagtgttggaggtgaagggctccagtatgcttggtgggaacaagaccatc
ctgattctgccttcagacatggcgagtcgtttgctgtgcagctcgctggaaacgagcgtg
gcgagcggcctgccccagctcacgcgcgacgactgcgaggtcaacgcgcccattcaggag
cgccaccacctgctccagggagaggagttgcttcgggcgctagaccaagtcatctga
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