Clupea harengus (Atlantic herring): 105897789
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Entry
105897789 CDS
T09045
Symbol
six4b
Name
(RefSeq) homeobox protein SIX4b
KO
K15615
homeobox protein SIX4
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105897789 (six4b)
Transcription factors [BR:
char03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain SINE
105897789 (six4b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SIX1_SD
Homeodomain
Homeobox_KN
HTH_TSHZ3
Motif
Other DBs
NCBI-GeneID:
105897789
NCBI-ProteinID:
XP_012680216
Ensembl:
ENSCHAG00000002381
UniProt:
A0A6P3VTS3
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Position
15:complement(11417154..11428354)
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AA seq
651 aa
AA seq
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MCSPKPGGVTYRDALKMSSSSSEVICADEIKRESTRALENRGSVKLSVLDPAELSMENAT
SAAAGDAVRAELLECTPSSLAFSPEQVACVCEALLQGGNVDRLARFLWSLPQSDLLRGNE
SILKAQAIVAFHQARYQELYCILENHNFSPSNHSSLQDMWYKARYTEAEKARGRPLGAVD
KYRLRRKYPLPRTIWDGEETVYCFKERSRNALKDMYKRNRYPSPAEKRNLAKITGLSLTQ
VSNWFKNRRQRDRNPSEAQSKSESDGNHSTEDESSKGQEDLSPRPLSGSSTGSAALGNGQ
SVIFSDVGTTVIQQIGDVKMAGAMGFSSDLSGANSHYINGGGGYIHPHGNNVLLNGLGTG
GHFLTFDSQRATLAQERLQGGGGSYAQFSLGLSDATGGAGKLEGMQALVSHTEDGGASSV
VTFTPSSSSSSSSSSSTSGLAHLGSYSVVHVPGTEASMSLPPLLLPPSSSATSHGSAPLG
SVVSDTPQQSPPVLYTLTQAVKQEPLESGAGHPGGYSYQTDMSLDQTTHMGYTASLFLSS
SSTSSSSSIVPAATTTVTSALSSAEGLAGQHHSIRILHHAGDVVGSGTTSGLVPADYRDH
GGVLSLSESLEAATGPGAAGAVRAVCAELELEGKELAKLQTVQMDEDCNDL
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgtgcagcccaaaacctggaggagtgacttaccgggacgcgttaaaaatgtcttcttcc
tcaagcgaggtcatttgcgccgatgaaatcaagagggaaagcacaagggcactggagaat
cgggggagtgtcaagctgtcagtgctggaccctgcggagttgtctatggagaatgcaact
tcggccgcagctggcgatgcggtccgagccgaacttttggagtgcaccccttcatccctg
gccttctctcccgaacaggtagcgtgcgtctgcgaggctctgctgcaaggaggaaatgtg
gaccgccttgcccggtttctgtggtcactgccgcagagtgatctgctgcgcggcaacgaa
agcatcttgaaagcgcaggcgattgtggctttccaccaggctcgctaccaggagctttac
tgtattcttgagaaccacaacttcagtccgtccaaccactcgtcgctccaggacatgtgg
tacaaggctcggtataccgaggcggagaaggcgcgaggcagaccgctgggtgccgtggat
aagtaccgattgcgcaggaaatatcctctaccaaggactatctgggacggggaagaaact
gtatactgcttcaaagagaggtccaggaatgcgctcaaggatatgtacaagcggaaccgg
tacccgtctcctgccgagaagagaaacctagccaaaatcactgggctttctttgacacaa
gtcagcaactggttcaaaaacaggaggcagagagacaggaatccatctgaagcgcagtcg
aaaagtgagtctgatggcaatcacagcacggaggacgagtccagcaaaggtcaggaggat
ctgtctccacgtccgctgtcaggcagctccaccggttcggctgccctgggcaatggccag
tccgtaatcttctcggacgtgggcaccaccgtcatccagcagatcggcgatgtgaagatg
gcgggggcaatgggcttcagcagcgatctgtccggcgccaactcgcactacatcaacggc
ggcggtggctacatccacccgcacggcaacaatgtgctgctcaacggcctgggcacgggt
gggcacttcttaacctttgactcccagagggcaaccctggcgcaggagaggctgcagggt
ggcggaggctcctatgcgcagttttctctggggctgtctgatgccacgggaggagccggg
aagctggaagggatgcaggctctagtctcccacacggaggatgggggagcgtcgtcagtg
gtcaccttcacgccttcgtcttcctcttcgtcatcctcatcctcctctacctctggactc
gcacacctgggcagctacagtgtggttcacgtccctggcacggaggccagcatgagccta
ccaccacttctacttcctccctcctcctcagcaacctctcatggctcagcccccctgggt
agcgtggtcagcgataccccccagcagagtccccctgtcctctacacactcacccaggcc
gtgaagcaggagcccctggagtccggcgcgggacaccccggcggttactcctaccagacg
gacatgtctctggaccaaactactcacatgggctacaccgcctcgctcttcctctcctcg
tcatccacctcctcctcttcctccatcgtccccgccgccaccaccaccgtcacctccgcc
ctctcgagcgccgagggccttgccgggcaacaccactccattcgcatcctccaccacgcc
ggggacgtcgttggcagcgggacgacgtccggcctggtgcccgcggactacagggaccac
ggtggcgtgttatccctctccgagtccctggaggcggcaacggggcctggagcggctggt
gcggtgagggcggtgtgtgctgaactggagctggagggcaaagagctggcaaagttgcaa
actgtgcagatggacgaggactgcaatgacctttga
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