Clupea harengus (Atlantic herring): 105898087
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Entry
105898087 CDS
T09045
Symbol
mid1
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1 isoform X1
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
105898087 (mid1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
105898087 (mid1)
Enzymes [BR:
char01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105898087 (mid1)
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
105898087 (mid1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
zf-B_box
ANCHR-like_BBOX
fn3
zf-RING_UBOX
RING_XB3-XBAT31
zf-C3HC4_4
zf-C3HC4
Pur_ac_phosph_N
PRY
zf-RING_2
zf-C3HC4_3
FN3_DSCAM-DSCAML_C
TRIM_CC
zf-C3HC4_2
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
105898087
NCBI-ProteinID:
XP_031416337
Ensembl:
ENSCHAG00000027139
UniProt:
A0A6P8EWW9
LinkDB
All DBs
Position
2:complement(30417369..30445434)
Genome browser
AA seq
689 aa
AA seq
DB search
METLESELTCPICLELFEDPLLLPCAHSLCFNCAHRILVSHCTSNESVESISAFQCPTCR
YVITLSHRGLEGLKRNVTLQNIIDRYQKASLSGPNSPSETRRERATSSSDGTAMTSPSER
VQCQFCEQEPPQDAVKTCVTCEVSYCEECLKATHPNKKPFTGHRLIEPLPDSHLRGLMCL
EHEDEKVNMYCVTDEQLICSLCKLVGRHRDHQVAALNERYDKLKREACRSPSEEREQEEA
DQQALDSNLSSLIKRNNELESLMGKLIQTCQHVEVNAARQENKLLEECDLLIDIIQQRRQ
IIGSKIKEGKVIRLRKLAQQIANCKQCIDRSSSLITQADHTLKETDHTRFLQTAKSITER
VSMATASSQILIPEINLNDTFDTFTLDFTREKKMLESLDYLTAPNPPIIREELCTASHDT
ITVHWTSDDEFSVVSYELQYAIFTGQANVVSLCNSADSWMIVPNIKHNHYTVHGLQTGTR
YIFIVKAINQAGSRSSEPGKLKTNSQPFKLDPKSAHKKLKVSHDSLTVERDETSSKKSQS
QDRFSSQGSYGVTGNVYIDSGRHYWEALIGGSTWFAVGIAYKTAPKHEWIGKNTASWVLC
RCNNAWVVRHNSKEMPIEPSPHLRRLGVLLDYDAGYLSFYDAVGSHHLYTYDISFIQPVC
PVFNVWNKCVTVLTGLPIPDHLETTDSQD
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggaaacactggagtcggagctgacctgcccaatctgtctggagctctttgaggatccg
ctgctgctgccctgtgcccacagcctgtgcttcaactgtgcccaccgcatcctggtgtcc
cactgcacctccaacgagtccgtggagtccattagcgctttccagtgtcctacctgtcgt
tatgtcatcaccctcagccatagaggcctagagggactcaaacggaacgtcacccttcag
aacattatcgaccgctaccaaaaggcgtcgctgagcgggcccaactccccgagcgagacg
cggcgcgagcgcgccacctcctcctccgacggcaccgccatgacgtcgcccagcgagcgc
gtgcagtgccagttctgcgagcaggagccgccgcaggacgcggtgaagacgtgcgtcacc
tgcgaggtgtcctactgcgaggagtgcctgaaggccacgcaccccaacaagaagcccttc
accgggcaccggctcatcgagcccctccccgactcccacctgcggggcctgatgtgcctg
gagcacgaggacgagaaggtcaacatgtactgtgtcaccgacgagcagctcatctgctcc
ctctgcaagctggtggggcgacaccgcgaccaccaagtggcggcactcaacgagcgctac
gacaaactcaagagagaggcttgccgctctccaagtgaggagagagaacaggaggaagca
gaccagcaagctctggattctaacctcagcagcctgatcaagaggaacaatgagctggag
agcctcatgggaaagttgatccagacctgccaacatgtagaggtaaatgcggctcgacaa
gaaaacaagcttcttgaggaatgtgatctcctgattgacatcatacagcaaaggagacag
atcatcgggtctaaaattaaggaaggaaaggttattcgtttgaggaaacttgcacaacag
attgctaattgcaagcagtgtatagacagatcatcatcactcatcactcaagctgatcac
accctgaaggagacagaccacacccgcttcctgcagactgccaaaagcatcacagagaga
gtctcaatggctacagcatcatctcaaatcctgataccagaaataaacctgaatgatacg
tttgacacattcacattagacttcactcgggagaagaaaatgctggaaagtctggattat
cttacagcccccaatcctcctataatccgagaggaattatgcacggcgtctcatgacaca
atcactgtccactggacatcagatgatgagttcagtgtggtttcctatgaactgcagtat
gccatctttactggacaagccaatgttgtcagtctgtgtaattcagcagatagctggatg
atcgtgcccaacataaaacacaaccactacacagtgcacggcctgcagaccggcaccagg
tacatcttcattgtcaaagccatcaaccaggcagggagccggagcagcgagccaggcaaa
ctgaagaccaacagccagcccttcaaattggaccccaagtctgctcacaagaagctgaag
gtgtcccatgacagcctgacagttgagagggacgagacgtcctcaaagaagagccagagt
caagaccggtttagcagccagggaagttatggagtcacaggaaatgtctacattgacagc
ggccgccactactgggaggccctgataggagggagcacatggtttgctgtgggcattgca
tacaagactgcccccaagcatgagtggattggcaaaaacactgcctcgtgggtgctgtgt
cgctgcaacaacgcctgggtggtgcgccacaacagcaaagagatgcccatcgagccgtcc
ccacacctgcgccgccttggcgtgctgctggactatgacgccggctacctgtccttctac
gacgctgtgggctcccaccatctctacacctatgacatctccttcatccagccggtgtgt
cctgtcttcaacgtgtggaacaagtgtgtgactgtcctcacaggacttcccattccagac
caccttgagactacagattctcaggactaa
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