Clupea harengus (Atlantic herring): 105898180
Help
Entry
105898180 CDS
T09045
Symbol
scarf1
Name
(RefSeq) scavenger receptor class F member 1
KO
K24318
scavenger receptor class F member 1
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
105898180 (scarf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105898180 (scarf1)
Membrane trafficking [BR:
char04131
]
Endocytosis
Phagocytosis
Scavenger receptors
105898180 (scarf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_Teneurin
EGF_2
EGF_PEAR1L
EGF_C8A_B_C6
Motif
Other DBs
NCBI-GeneID:
105898180
NCBI-ProteinID:
XP_031429041
UniProt:
A0A6P8G025
LinkDB
All DBs
Position
9:6619285..6636549
Genome browser
AA seq
981 aa
AA seq
DB search
MDELGAHSTLRAHKTPYARSVNTERGAKRILSPPPGVLWRPGLERGVKAPSEVEAMGFPL
FGLGFLVFVCFGSAQKLSPTGRNVCLDHRDPSSLVCCDGWRPQGEECSIPLCEGERACQQ
DEVCVYPGICRCRPGYFGPQCQTPCPPEFWASDCRELCLCHPHGRCHPATGECTCHPKRW
GPLCQHECKCAHHGHCDPLHGNCTCDEGWWTGTCAKMCQCFSQGTSTCDPVTGQCVCKRD
YWGLKCSLRCNCYLSPCDQNTGHCQCLKGWWGPGCDRRCNCDLDHGECDIVSGECVCEPG
YKSPVCHETCSPGHYGRGCLARCGHCVRGQACSTVHGSCDACDPGWNGTRCDQRCPLGSY
GDHCRKVCPSCKNQEACNPVTGECSHCNPGWLGPRCDKSCPDGTFGDDCRFQCNLCLHGR
CDPMTGNCICQPGFRGESCNSTCPDHLYGVNCSSVCDCGQVACHGDTGVCLYGTRVGLIV
GLLILMLLILLALVCCCCCCCVQAPTDGKERVATGDRGPALRMKHHVYSVLATVGSSIPC
ISLWSSGLPRVTVSHHDPELTFNHSFIEPPSSGWMTDNSFESDDGEEGEALYCVPPREDI
STIAGGEFQELSSKCNMFPDPSAFCSEDMSLAFGIPRTSSIAKSKRPSVSFAEGTKFSPK
ERRGSAQELPVVSRKPKSPWGVLMLSALQVGRGEGETERIEQEPERGESPVHEQGTTEDP
ADPEAGRYTATPSRNTLAVPGSNRRRTLSNTAKRIAQAQVPTGSHQSEGGSDKVTTVYVT
VGKASRGSKTEVTSEGPVQAMLRRLGSIQRQRDEASKPKARGEAITKPPRRKLGARAAAW
EQAVEAGGGSPPAAVPMRKPSRRKHTSLSSPCPMSSSDSPLEGATSKRPLSSILKSVPEW
VSPVLQGREGPRAEPGACSPDPPREDGYLTVGPAHSVANLGEVIANEVIVACEDDGPKYE
NVMHYESNDSSPNYETIHDIW
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atggacgagcttggagcacacagtacactgcgggcccacaagacaccatacgctcggagt
gtgaacacagagagaggggcaaagaggattctgtcccccccgcccggtgtcctttggaga
ccaggcctggagagaggagtgaaggccccttctgaagtggaggccatgggcttccctctg
tttggtctcgggtttctggtctttgtgtgcttcggatccgctcagaaactctccccaaca
ggacggaacgtctgcctggaccacagggacccgtcctctctggtgtgctgtgatggctgg
cgtccacagggagaggagtgtagtatccctctgtgtgagggagagagggcctgccagcag
gatgaggtgtgtgtctacccgggcatctgtcgctgcaggcctggctactttgggcctcag
tgccaaacgccctgccctcctgagttctgggcctcagactgccgtgagctctgcctgtgc
catccccacgggcgctgccacccggccacaggcgagtgcacctgccaccccaaacgctgg
ggcccgctgtgccagcacgagtgcaagtgcgcccaccacggccactgcgacccactgcac
ggcaactgcacctgtgacgagggctggtggacgggcacctgcgccaagatgtgccagtgc
ttctcccagggcacgtccacgtgtgacccggtgacggggcagtgcgtgtgcaagcgggac
tactggggactgaagtgtagtctgcgctgtaactgctacctctccccctgtgaccagaac
acgggccactgccagtgcctgaagggctggtgggggccgggctgtgaccgccgctgcaac
tgcgacctcgaccacggggagtgcgacatcgtcagtggggagtgtgtgtgcgagcccggg
tacaaaagcccggtgtgccacgagacctgtagccccggccactatggcagaggatgcctg
gcgaggtgtggtcactgtgtgagaggccaagcgtgctctacagtgcacggctcctgtgac
gcctgcgatccagggtggaacggcacacgctgtgaccagcgttgtccactgggttcctat
ggagaccactgtcgtaaggtgtgtccttcctgcaagaaccaagaagcctgcaatcccgtg
acaggggagtgttctcactgtaaccctggctggcttggtcctaggtgtgacaagtcatgt
cctgacgggacgtttggagatgactgccgctttcagtgcaacctctgccttcatgggcgc
tgtgaccccatgacaggaaactgcatctgtcagcctggcttcaggggcgagagctgcaac
agcacttgtccagatcatctctacggtgtgaactgctcctctgtatgtgactgtggtcaa
gtggcctgtcatggagacacaggagtgtgcctctacggtactcgtgtgggtctcatcgtg
ggccttctcatcctcatgctgctcatcctgcttgctttggtctgctgctgttgctgctgc
tgtgtacaggctcccactgatgggaaagagagggttgccacaggcgacaggggtcctgcc
ctgcgaatgaagcaccacgtatacagtgtgttggctaccgtaggctcatccattccttgc
atcagcctgtggtcttcagggttacctcgagtcacagtgtcacaccacgatcctgagctg
acgttcaaccacagcttcattgagccgccctcgtctggttggatgaccgacaactcgttt
gagagtgacgatggagaagagggagaggccttatactgtgttccacccagggaagatatc
tccaccatagcgggaggggagttccaggagctgagctccaagtgtaacatgttccctgac
ccatcagccttctgctctgaggacatgtctctagcctttgggatcccgcgcacctccagc
atcgccaagtccaagcgcccgtcagtctccttcgcagaaggcaccaagttcagccccaag
gagcgccgcggctcggcccaggagctcccggtcgtcagccgcaagcccaaatccccctgg
ggggtcctcatgctctcagccctccaggtgggccggggggagggcgagacggagaggatt
gaacaggagccagagaggggggagagccccgtgcacgagcagggtaccactgaagatccg
gcagacccagaggccgggaggtataccgccacaccctcccgtaacaccctcgccgtacca
ggaagcaaccggcggcgcaccctgtccaacacagccaagaggattgcccaagctcaggtc
ccgactggcagccaccagtcagagggtgggtcggataaggtgaccactgtgtacgtgact
gtaggaaaagcctcacgagggtccaagaccgaggtcacctcagaggggcctgtgcaggcc
atgctgcgtcggctgggcagtatccaaaggcagagagatgaagccagcaagccaaaggcc
cgcggagaggccatcactaagcccccgcggaggaagctgggagcgcgggcggcagcgtgg
gagcaggcggtggaagctggaggggggagtccgcccgctgcggtgcccatgaggaagccc
agccgtcggaaacacacatccctcagctccccctgtcccatgagctccagcgacagccca
ctggagggcgccacctccaagaggccgctgtcctccatcctcaagagtgtcccggagtgg
gtgtctcctgtcttgcaggggagggaggggccacgggctgagccaggagcctgcagccca
gatcctccaagagaggatgggtacctgactgtgggaccggcacacagtgtggccaacctg
ggggaagtcatcgccaatgaagtcattgtggcctgtgaagatgatggaccaaagtatgaa
aatgtcatgcattatgaaagcaatgatagtagtcccaattatgaaactatccatgatatc
tggtaa
DBGET
integrated database retrieval system
